Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012573

Physical Location & Seq

Genomic Coordinates Forward (+)

18055490 .. 18055890

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTTCAGCATGTTGATGATACTGAATGTTTTGTTTTGCTGTGCAGACCCCAGGTAACAATTGCAACAGCCATGCTGTCATCCATTCTACATTTGCCTATACCATGCGACAGAAGGATAATGCTGTTAGTTGATTGCAGGGTTCCAATGGAAACAATTGAGTTCATTGAATCTAAATTGGATTTGCCGAATGACTTCAAGAAGTCACTGATTCAAAAGTACCCTGACTTTTTTGCAGTTAAAGATGTCAATGGAAGAGCTTATCTTCATTTGGAGAATTGGGACTCTTCACTAGCGGTCGCAGCTTGTGGAACGATTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

107

Amino Acids

12.1

Weight (kDa)

5.18

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	40 - 102	1.2e-15	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03470 FvH4_2g40520 FvH4_2g40520
malus_domestica	MD00G1038300.v1.1 MD08G1038900.v1.1 MD16G1038500.v1.1
prunus_persica	Prupe.1G386400_v2.0.a1
pyrus_communis	pycom08g03060
rosa_chinensis	RchiOBHm_Chr6g0300211
rosa_laevigata	RLG00000011357
rosa_multiflora	Rmu_sc0001670.1_g000034
rosa_roxburghii	Rroxscaffold_7G00168010
rosa_rugosa	Rorug05G0186800 Rorug06G0294100
rosa_samantha	Rh6AG406300 Rh6BG414200 Rh6CG421400 Rh6DG407000
rosa_wichuraiana	Rw6G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	296
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	170, 199, 215
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	260, 305
AluI	AGCT	2 cut(s)	260, 305
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	296
BspACI	CCGC	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	53
Bst6I	CTCTTC	2 cut(s)	250, 292
BstF5I	GGATG	1 cut(s)	80
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	3 cut(s)	11, 73, 105
CviJI	RGCY	4 cut(s)	71, 260, 305, 321
CviKI_1	RGCY	4 cut(s)	71, 260, 305, 321
CviQI	GTAC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	250, 292
EarI	CTCTTC	2 cut(s)	250, 292
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	14, 76, 108
FaiI	YATR	4 cut(s)	12, 74, 101, 106
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	10, 72, 104
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	14, 76, 108
HinfI	GANTC	3 cut(s)	170, 211, 284
Hpy188III	TCNNGA	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	45, 65, 138, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	14, 76, 108
LguI	GCTCTTC	1 cut(s)	250
LpnPI	CCDG	4 cut(s)	38, 65, 124, 237
Lsp1109I	GCAGC	1 cut(s)	314
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	55, 204
MboII	GAAGA	3 cut(s)	257, 267, 279
MfeI	CAATTG	2 cut(s)	60, 156
MluCI	AATT	4 cut(s)	60, 156, 176, 277
MlyI	GAGTC	1 cut(s)	278
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	60, 156
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	14, 76, 108
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	170, 211
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	3 cut(s)	57, 262, 307
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	4 cut(s)	60, 156, 176, 277
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	51
TasI	AATT	4 cut(s)	60, 156, 176, 277
TfiI	GAWTC	2 cut(s)	170, 211
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	154, 257
TspRI	CASTG	1 cut(s)	213
XceI	RCATGY	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.