Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012573

Physical Location & Seq

Genomic Coordinates Forward (+)

44617875 .. 44618854

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0294100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCGAAGCGAGGGAGGGGAGGATCGGCCGGGAACAAGTTCCGGATGTCGCTGGGTCTGCCGGTGGCGGCGACGATCAACTGCGCCGACAACACCGGAGCCAAGAACCTCTACATCATATCCGTGAAGGGGATCAAGGGGCGCCTCAACCGTCTGCCGTCGGCCTGCGTCGGCGACATGGTGATGGCCACCGTGAAGAAGGGAAAGCCGGATCTGAGGAAGAAGGTGCTGCCGGCCGTGGTGGTCCGTCAGCGCAAGCCCTGGCGCCGAAAGGACGGAGTGTTCATGTACTTTGAGGACAACGCCGGCGTGATTGTGAACCCCAAGGGAGAGATGAAGGGATCGGCGATTACTGGGCCGATTGGGAAGGAGTGCGCGGATCTCTGGCCCAGAATTGCGAGCGCTGCCAATGCTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.0

Weight (kDa)

10.48

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14	PF00238	21 - 140	1.2e-41	Ribosomal protein L14p/L23e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012573)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03470 FvH4_2g40520 FvH4_2g40520
malus_domestica	MD00G1038300.v1.1 MD08G1038900.v1.1 MD16G1038500.v1.1
prunus_persica	Prupe.1G386400_v2.0.a1
pyrus_communis	pycom08g03060
rosa_chinensis	RchiOBHm_Chr6g0300211
rosa_laevigata	RLG00000011357
rosa_multiflora	Rmu_sc0001670.1_g000034
rosa_roxburghii	Rroxscaffold_7G00168010
rosa_rugosa	Rorug05G0186800 Rorug06G0294100
rosa_samantha	Rh6AG406300 Rh6BG414200 Rh6CG421400 Rh6DG407000
rosa_wichuraiana	Rw6G035550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 264
AccII	CGCG	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	2 cut(s)	68, 377
AclWI	GGATC	5 cut(s)	31, 140, 219, 349, 387
AcoI	YGGCCR	3 cut(s)	27, 186, 234
AcyI	GRCGYC	2 cut(s)	142, 265
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	260
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AlwI	GGATC	5 cut(s)	31, 140, 219, 349, 387
Aor13HI	TCCGGA	1 cut(s)	42
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	6 cut(s)	27, 162, 186, 234, 356, 386
ApeKI	GCWGC	2 cut(s)	229, 404
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	6 cut(s)	86, 144, 255, 267, 377, 404
AspS9I	GGNCC	3 cut(s)	244, 356, 387
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	141, 264
BbvI	GCAGC	2 cut(s)	216, 391
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	142, 221
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	31
BfoI	RGCGCY	3 cut(s)	145, 268, 405
BisI	GCNGC	3 cut(s)	69, 230, 405
BlsI	GCNGC	3 cut(s)	70, 231, 406
Bme1390I	CCNGG	2 cut(s)	31, 262
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	244, 356, 387
BmiI	GGNNCC	3 cut(s)	100, 143, 266
BmrFI	CCNGG	2 cut(s)	31, 262
BmrI	ACTGGG	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	142, 265
BsaJI	CCNNGG	3 cut(s)	237, 260, 324
BsaWI	WCCGGW	2 cut(s)	42, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	3 cut(s)	61, 232, 305
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	237, 260, 324
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	358
BseX3I	CGGCCG	2 cut(s)	27, 234
BseXI	GCAGC	2 cut(s)	216, 391
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	2 cut(s)	30, 237
BshFI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BshNI	GGYRCC	2 cut(s)	141, 264
BsiEI	CGRYCG	2 cut(s)	30, 237
BsiSI	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
Bsp13I	TCCGGA	1 cut(s)	42
Bsp143I	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
BspACI	CCGC	2 cut(s)	68, 377
BspANI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BspCNI	CTCAG	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	3 cut(s)	100, 143, 266
BspPI	GGATC	5 cut(s)	31, 140, 219, 349, 387
BspT107I	GGYRCC	2 cut(s)	141, 264
BsrFI	RCCGGY	3 cut(s)	61, 232, 305
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	3 cut(s)	61, 232, 305
BssECI	CCNNGG	3 cut(s)	237, 260, 324
BssMI	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
BssNI	GRCGYC	2 cut(s)	142, 265
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	152, 193
BstACI	GRCGYC	2 cut(s)	142, 265
BstC8I	GCNNGC	5 cut(s)	166, 234, 257, 307, 400
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	3 cut(s)	145, 268, 405
BstHHI	GCGC	6 cut(s)	86, 144, 255, 267, 377, 404
BstKTI	GATC	6 cut(s)	26, 78, 135, 214, 344, 382
BstMBI	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
BstMCI	CGRYCG	2 cut(s)	30, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	29, 260
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	216, 391
BstX2I	RGATCY	2 cut(s)	211, 379
BstYI	RGATCY	2 cut(s)	211, 379
BstZI	CGGCCG	2 cut(s)	27, 234
BsuRI	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	5 cut(s)	166, 234, 257, 307, 400
CfoI	GCGC	6 cut(s)	86, 144, 255, 267, 377, 404
Cfr10I	RCCGGY	3 cut(s)	61, 232, 305
Cfr13I	GGNCC	3 cut(s)	244, 356, 387
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	178, 286
CviJI	RGCY	9 cut(s)	29, 101, 164, 188, 208, 236, 259, 358, 388
CviKI_1	RGCY	9 cut(s)	29, 101, 164, 188, 208, 236, 259, 358, 388
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	2 cut(s)	143, 266
DpnI	GATC	6 cut(s)	25, 77, 134, 213, 343, 381
DpnII	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
EaeI	YGGCCR	3 cut(s)	27, 186, 234
EagI	CGGCCG	2 cut(s)	27, 234
EclXI	CGGCCG	2 cut(s)	27, 234
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	244
Eco47III	AGCGCT	1 cut(s)	403
Eco52I	CGGCCG	2 cut(s)	27, 234
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	324
EgeI	GGCGCC	2 cut(s)	143, 266
EheI	GGCGCC	2 cut(s)	143, 266
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	181, 289
FaiI	YATR	3 cut(s)	119, 179, 287
FatI	CATG	2 cut(s)	177, 285
Fnu4HI	GCNGC	3 cut(s)	69, 230, 405
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	69, 230, 405
GlaI	GCGC	6 cut(s)	85, 143, 254, 266, 376, 403
GluI	GCNGC	3 cut(s)	69, 230, 405
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	3 cut(s)	145, 268, 405
HaeIII	GGCC	6 cut(s)	29, 164, 188, 236, 358, 388
HapII	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	6 cut(s)	86, 144, 255, 267, 377, 404
Hin1I	GRCGYC	2 cut(s)	142, 265
Hin1II	CATG	2 cut(s)	181, 289
Hin6I	GCGC	6 cut(s)	84, 142, 253, 265, 375, 402
HinP1I	GCGC	6 cut(s)	84, 142, 253, 265, 375, 402
HpaII	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	216, 422
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	3 cut(s)	76, 163, 173
HpyAV	CCTTC	5 cut(s)	121, 193, 217, 331, 361
HpyCH4III	ACNGT	2 cut(s)	152, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
HpyF3I	CTNAG	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	142, 265
Hsp92II	CATG	2 cut(s)	181, 289
HspAI	GCGC	6 cut(s)	84, 142, 253, 265, 375, 402
KasI	GGCGCC	2 cut(s)	141, 264
Kpn2I	TCCGGA	1 cut(s)	42
KroI	GCCGGC	2 cut(s)	232, 305
KroNI	GCCGGC	2 cut(s)	234, 307
Kzo9I	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	216, 391
MalI	GATC	6 cut(s)	25, 77, 134, 213, 343, 381
MboI	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
MboII	GAAGA	2 cut(s)	208, 232
MflI	RGATCY	2 cut(s)	211, 379
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	2 cut(s)	142, 265
MnlI	CCTC	7 cut(s)	5, 9, 14, 119, 155, 210, 289
Mox20I	TGGCCA	1 cut(s)	188
MreI	CGCCGGCG	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	42
MroNI	GCCGGC	2 cut(s)	232, 305
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	2 cut(s)	122, 182
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	7 cut(s)	30, 43, 62, 96, 209, 233, 306
MspR9I	CCNGG	2 cut(s)	31, 262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	58, 404, 410
NaeI	GCCGGC	2 cut(s)	234, 307
NarI	GGCGCC	2 cut(s)	142, 265
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
NgoMIV	GCCGGC	2 cut(s)	232, 305
NlaIII	CATG	2 cut(s)	181, 289
NlaIV	GGNNCC	3 cut(s)	100, 143, 266
PdiI	GCCGGC	2 cut(s)	234, 307
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	70, 231, 406
PluTI	GGCGCC	2 cut(s)	145, 268
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	100, 143, 266
PspPI	GGNCC	3 cut(s)	244, 356, 387
PsuI	RGATCY	2 cut(s)	211, 379
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	122, 182
SatI	GCNGC	3 cut(s)	69, 230, 405
Sau3AI	GATC	6 cut(s)	23, 75, 132, 211, 341, 379
Sau96I	GGNCC	3 cut(s)	244, 356, 387
ScrFI	CCNGG	2 cut(s)	31, 262
SetI	ASST	2 cut(s)	111, 228
SfoI	GGCGCC	2 cut(s)	143, 266
SgrAI	CRCCGGYG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	122, 182
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	2 cut(s)	68, 377
SspDI	GGCGCC	2 cut(s)	141, 264
StyD4I	CCNGG	2 cut(s)	29, 260
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	152, 193
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	229, 404
TspDTI	ATGAA	2 cut(s)	274, 350
TspGWI	ACGGA	3 cut(s)	112, 236, 291
VpaK11BI	GGWCC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.