MD16G1081600.v1.1

beta-1,3-galactosyltransferase 19

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
5715753 .. 5718561
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1081600.v1.1.491

Sequence Viewer

Length: 1347 bp
ATGGTTATTCCCTGCGGGATGACTCTTGGGTCTCACATAACGGTGGTGGGCACGCCTAGGTGGGCCCACTCGGAGTACGACCCGAAGATTGCGATACTGAAGGAGGGGGACGAGGCGGTGATGGTCTCTCAGTTTATGATGGAGTTGCAGGGTTTGAAGAACGTGGAGGGGGAGGACCCGCCTAGGATACTGCATTTCAATCCGAGGTTGAAGGGGGATTGGAGTGGGAAGCCGTTGATCGAGCAGAACACTTGTTACCGGATGCAATTGGGGTCGGCCCTCCGCTGCGAGGGGTGGAAGTCCCTGGCTGATGAAGATACCTGTAGGTGGCTTCAATGTGTTCTAATTGCTTTGCTTAATGAATTGAGAGTTGATGGACAGGTGAAATATGAGAAATGGATTCGTGACGATGACAATAAGTCGGAAGAATCGAAGGTCACATGGTGGTTGAACAGGCTGATAGGACGAACAAAGAAGGTGACCATAGACTGGCCATACCCTTTTGCAGAGGGAAAGCTGTTTATTCTTACTGTAAGTGCTGGTTTGGAAGGTTTCCATATCAATGTTGATGGTAGGCATGTCACTTCTTTCCCTTATCGCACGGGATTTGTTCTTGAGGATGCTACCGGACTATCTGTAAATGGAGACATTGATGTGCACTCTGTGCTTGCAGCCTCCTTGTCCACATCACATCCTAGTTTTTTGCCTCAGATGCACCTTGAAATGGTTACTAAGTGGAAAGCTCCGTTTCTTCCCTTTGGGCATGTAGAGTTGTTCATTGGCATTCTGTCTGCTGGCAGCCATTTTGCGGAGCGTATGGCTGTGAGAAAGTCTTGGATGCAGCATAAATTAATCAAATCTTCACGTGTTGTGGCTCGTTTTTTTGTAGCACTGCATGGAAGAAAGGACGTAAATGTAGAGCTTATGAAAGAAGTAGATTATTTTGGGGACATTGTTATAGTTCCTTATATGGATAACTATGATCTGGTAGTATTGAAGACTGTTGCAATTTGTGAATATGGGGTTCGCACTGTGCCTGCAAGGTATATCATGAAGTGCGATGATGACACCTTTGTCAGGGTGGATGCTGTGCTCAAGGAAGCACGGAAAATTCATGGGTATAGAAGCTTCTATATTGGAAATATGAACTACCACCACAACCCTCTTCGCCATGGTAAATGGGCAGTGACATATGAGGAATGGCTTGAAGAAGATTATCCACCCTATGCAAATGGTCCAGGATACATAATCTCCTCTGACATAGCAAAATCCATCGTATCCGAGTTTGAAAGGCATAAGTTGCGATTGTTCAAGATGGAAGATGTGAGCATGGGAATGTGGGTGTAG

Protein Analysis

449

Amino Acids

51.4

Weight (kDa)

6.5

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gal-bind_lectin PF00337 2 - 223 8.8e-26 Galactoside-binding lectin
Galactosyl_T PF01762 271 - 448 7.7e-32 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010823)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 28, 1073
AccB7I CCANNNNNTGG 1 cut(s) 489
AciI CCGC 5 cut(s) 15, 116, 179, 283, 809
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 1110
AcuI CTGAAG 1 cut(s) 119
AcvI CACGTG 1 cut(s) 866
AdeI CACNNNGTG 2 cut(s) 444, 664
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 6 cut(s) 289, 327, 489, 724, 808, 1077
AflIII ACRYGT 1 cut(s) 865
AhdI GACNNNNNGTC 1 cut(s) 418
AjnI CCWGG 2 cut(s) 303, 1237
AluBI AGCT 4 cut(s) 517, 743, 922, 1128
AluI AGCT 4 cut(s) 517, 743, 922, 1128
Alw21I GWGCWC 2 cut(s) 660, 1095
Alw26I GTCTC 3 cut(s) 36, 130, 639
Alw44I GTGCAC 1 cut(s) 656
AoxI GGCC 3 cut(s) 63, 276, 491
ApaI GGGCCC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 4 cut(s) 285, 671, 798, 841
ApoI RAATTY 1 cut(s) 1110
AseI ATTAAT 1 cut(s) 851
AspA2I CCTAGG 2 cut(s) 56, 182
AspS9I GGNCC 5 cut(s) 63, 64, 175, 277, 1235
AsuHPI GGTGA 3 cut(s) 130, 394, 490
AvaII GGWCC 2 cut(s) 175, 1235
AvrII CCTAGG 2 cut(s) 56, 182
BaeGI GKGCMC 3 cut(s) 53, 67, 660
BalI TGGCCA 1 cut(s) 493
BanII GRGCYC 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 1112, 1144
BbrPI CACGTG 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 1004
Bbv12I GWGCWC 2 cut(s) 660, 1095
BbvI GCAGC 4 cut(s) 272, 683, 810, 853
BccI CCATC 6 cut(s) 115, 133, 368, 563, 1280, 1309
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 305, 1239
BciVI GTATCC 3 cut(s) 180, 1235, 1288
BcoDI GTCTC 3 cut(s) 36, 130, 639
BfaI CTAG 3 cut(s) 57, 183, 696
BfmI CTRYAG 1 cut(s) 322
BfuI GTATCC 3 cut(s) 180, 1235, 1288
BisI GCNGC 4 cut(s) 286, 672, 799, 842
BlnI CCTAGG 2 cut(s) 56, 182
BlsI GCNGC 4 cut(s) 287, 673, 800, 843
Bme1390I CCNGG 2 cut(s) 305, 1239
Bme18I GGWCC 2 cut(s) 175, 1235
BmeRI GACNNNNNGTC 1 cut(s) 418
BmgT120I GGNCC 5 cut(s) 63, 64, 175, 277, 1235
BmiI GGNNCC 2 cut(s) 65, 177
BmrFI CCNGG 2 cut(s) 305, 1239
BmsI GCATC 5 cut(s) 252, 610, 702, 828, 1075
BpiI GAAGAC 1 cut(s) 1004
BpuEI CTTGAG 2 cut(s) 635, 1079
BsaAI YACGTR 1 cut(s) 866
BsaI GGTCTC 2 cut(s) 36, 130
BsaJI CCNNGG 5 cut(s) 56, 182, 203, 303, 1171
BsaWI WCCGGW 2 cut(s) 258, 626
BsaXI ACNNNNNCTCC 2 cut(s) 1235, 1265
Bsc4I CCNNNNNNNGG 6 cut(s) 289, 327, 489, 724, 808, 1077
Bse1I ACTGG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 305, 1239
BseDI CCNNGG 5 cut(s) 56, 182, 203, 303, 1171
BseGI GGATG 6 cut(s) 24, 267, 625, 691, 843, 1090
BseLI CCNNNNNNNGG 6 cut(s) 289, 327, 489, 724, 808, 1077
BseMII CTCAG 2 cut(s) 143, 722
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 1243
BseSI GKGCMC 3 cut(s) 53, 67, 660
BseXI GCAGC 4 cut(s) 272, 683, 810, 853
BshFI GGCC 3 cut(s) 65, 278, 493
BsiHKAI GWGCWC 2 cut(s) 660, 1095
BsiSI CCGG 2 cut(s) 259, 627
BslFI GGGAC 3 cut(s) 122, 286, 962
BslI CCNNNNNNNGG 6 cut(s) 289, 327, 489, 724, 808, 1077
BsmAI GTCTC 3 cut(s) 36, 130, 639
BsmFI GGGAC 3 cut(s) 122, 286, 962
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 3 cut(s) 65, 278, 493
Bso31I GGTCTC 2 cut(s) 36, 130
Bsp120I GGGCCC 1 cut(s) 63
Bsp1286I GDGCHC 4 cut(s) 53, 67, 660, 1095
Bsp143I GATC 2 cut(s) 237, 982
Bsp19I CCATGG 1 cut(s) 1171
BspACI CCGC 5 cut(s) 15, 116, 179, 283, 809
BspANI GGCC 3 cut(s) 65, 278, 493
BspCNI CTCAG 2 cut(s) 142, 721
BspHI TCATGA 1 cut(s) 1050
BspLI GGNNCC 2 cut(s) 65, 177
BspTNI GGTCTC 2 cut(s) 36, 130
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 5 cut(s) 56, 182, 203, 303, 1171
BssMI GATC 2 cut(s) 237, 982
BssT1I CCWWGG 3 cut(s) 56, 182, 1171
Bst2UI CCWGG 2 cut(s) 305, 1239
Bst4CI ACNGT 4 cut(s) 43, 532, 1003, 1033
Bst6I CTCTTC 1 cut(s) 1170
BstAPI GCANNNNNTGC 2 cut(s) 664, 1300
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 4 cut(s) 53, 669, 796, 1038
BstDEI CTNAG 3 cut(s) 129, 708, 732
BstDSI CCRYGG 1 cut(s) 1171
BstEII GGTNACC 1 cut(s) 478
BstENI CCTNNNNNAGG 1 cut(s) 1075
BstF5I GGATG 6 cut(s) 24, 267, 625, 691, 843, 1090
BstKTI GATC 2 cut(s) 240, 985
BstMAI GTCTC 3 cut(s) 36, 130, 639
BstMBI GATC 2 cut(s) 237, 982
BstMWI GCNNNNNNNGC 3 cut(s) 664, 712, 1300
BstNI CCWGG 2 cut(s) 305, 1239
BstNSI RCATGY 2 cut(s) 581, 767
BstPI GGTNACC 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 303, 1237
BstSFI CTRYAG 1 cut(s) 322
BstSLI GKGCMC 3 cut(s) 53, 67, 660
BstV1I GCAGC 4 cut(s) 272, 683, 810, 853
BstV2I GAAGAC 1 cut(s) 1004
BsuI GTATCC 3 cut(s) 180, 1235, 1288
BsuRI GGCC 3 cut(s) 65, 278, 493
BtgI CCRYGG 1 cut(s) 1171
BtgZI GCGATG 1 cut(s) 1074
BtsCI GGATG 6 cut(s) 24, 267, 625, 691, 843, 1090
BtsI GCAGTG 2 cut(s) 890, 1191
BtsIMutI CAGTG 3 cut(s) 890, 1029, 1191
Cac8I GCNNGC 4 cut(s) 53, 669, 796, 1038
CciI TCATGA 1 cut(s) 1050
Cfr13I GGNCC 5 cut(s) 63, 64, 175, 277, 1235
Csp6I GTAC 1 cut(s) 76
CviAII CATG 8 cut(s) 441, 578, 764, 896, 1051, 1115, 1172, 1330
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 3 cut(s) 129, 708, 732
DpnI GATC 2 cut(s) 239, 984
DpnII GATC 2 cut(s) 237, 982
DraIII CACNNNGTG 2 cut(s) 444, 664
DrdI GACNNNNNNGTC 2 cut(s) 28, 1073
DriI GACNNNNNGTC 1 cut(s) 418
DseDI GACNNNNNNGTC 2 cut(s) 28, 1073
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 1 cut(s) 1170
Eam1105I GACNNNNNGTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 1170
Eco130I CCWWGG 3 cut(s) 56, 182, 1171
Eco24I GRGCYC 1 cut(s) 67
Eco31I GGTCTC 2 cut(s) 36, 130
Eco47I GGWCC 2 cut(s) 175, 1235
Eco57I CTGAAG 1 cut(s) 119
Eco72I CACGTG 1 cut(s) 866
Eco91I GGTNACC 1 cut(s) 478
EcoNI CCTNNNNNAGG 1 cut(s) 1075
EcoO109I RGGNCCY 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 478
EcoRII CCWGG 2 cut(s) 303, 1237
EcoT14I CCWWGG 3 cut(s) 56, 182, 1171
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 3 cut(s) 56, 182, 1171
FaeI CATG 8 cut(s) 444, 581, 767, 899, 1054, 1118, 1175, 1333
FaqI GGGAC 3 cut(s) 122, 286, 962
FatI CATG 8 cut(s) 440, 577, 763, 895, 1050, 1114, 1171, 1329
FauI CCCGC 2 cut(s) 8, 186
FauNDI CATATG 1 cut(s) 1192
Fnu4HI GCNGC 4 cut(s) 286, 672, 799, 842
FokI GGATG 6 cut(s) 31, 274, 632, 678, 850, 1097
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 4 cut(s) 286, 672, 799, 842
FspBI CTAG 3 cut(s) 57, 183, 696
GluI GCNGC 4 cut(s) 286, 672, 799, 842
HaeIII GGCC 3 cut(s) 65, 278, 493
HapII CCGG 2 cut(s) 259, 627
Hin1II CATG 8 cut(s) 444, 581, 767, 899, 1054, 1118, 1175, 1333
HindIII AAGCTT 1 cut(s) 1126
HinfI GANTC 3 cut(s) 22, 400, 428
HpaII CCGG 2 cut(s) 259, 627
HphI GGTGA 3 cut(s) 130, 394, 490
Hpy166II GTNNAC 2 cut(s) 658, 684
Hpy188I TCNGA 6 cut(s) 73, 204, 424, 711, 1258, 1282
Hpy188III TCNNGA 4 cut(s) 404, 614, 1051, 1312
Hpy8I GTNNAC 2 cut(s) 658, 684
HpyAV CCTTC 5 cut(s) 94, 205, 427, 469, 542
HpyCH4III ACNGT 4 cut(s) 43, 532, 1003, 1033
HpyCH4IV ACGT 3 cut(s) 162, 865, 909
HpyF10VI GCNNNNNNNGC 3 cut(s) 664, 712, 1300
HpyF3I CTNAG 3 cut(s) 129, 708, 732
HpySE526I ACGT 3 cut(s) 162, 865, 909
Hsp92II CATG 8 cut(s) 444, 581, 767, 899, 1054, 1118, 1175, 1333
Kzo9I GATC 2 cut(s) 237, 982
LmnI GCTCC 2 cut(s) 748, 811
Lsp1109I GCAGC 4 cut(s) 272, 683, 810, 853
LweI GCATC 5 cut(s) 252, 610, 702, 828, 1075
MaeI CTAG 3 cut(s) 57, 183, 696
MaeII ACGT 3 cut(s) 162, 865, 909
MaeIII GTNAC 7 cut(s) 254, 404, 436, 478, 580, 727, 1186
MalI GATC 2 cut(s) 239, 984
MboI GATC 2 cut(s) 237, 982
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 4 cut(s) 53, 67, 660, 1095
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 6 cut(s) 266, 345, 362, 848, 1008, 1110
MluNI TGGCCA 1 cut(s) 493
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 402
Mox20I TGGCCA 1 cut(s) 493
MscI TGGCCA 1 cut(s) 493
MseI TTAA 2 cut(s) 357, 851
MslI CAYNNNNRTG 4 cut(s) 41, 561, 653, 1334
Msp20I TGGCCA 1 cut(s) 493
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 2 cut(s) 259, 627
MspR9I CCNGG 2 cut(s) 305, 1239
MunI CAATTG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 2 cut(s) 305, 1239
MwoI GCNNNNNNNGC 3 cut(s) 664, 712, 1300
NcoI CCATGG 1 cut(s) 1171
NdeI CATATG 1 cut(s) 1192
NdeII GATC 2 cut(s) 237, 982
NlaIII CATG 8 cut(s) 444, 581, 767, 899, 1054, 1118, 1175, 1333
NlaIV GGNNCC 2 cut(s) 65, 177
NmuCI GTSAC 5 cut(s) 404, 436, 478, 580, 1186
NspI RCATGY 2 cut(s) 581, 767
PagI TCATGA 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PctI GAATGC 1 cut(s) 783
PfeI GAWTC 2 cut(s) 400, 428
PflMI CCANNNNNTGG 1 cut(s) 489
PfoI TCCNGGA 1 cut(s) 1237
PkrI GCNGC 4 cut(s) 287, 673, 800, 843
PleI GAGTC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 866
PmlI CACGTG 1 cut(s) 866
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 866
PpuMI RGGWCCY 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 851
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 303, 1237
PspCI CACGTG 1 cut(s) 866
PspEI GGTNACC 1 cut(s) 478
PspGI CCWGG 2 cut(s) 303, 1237
PspN4I GGNNCC 2 cut(s) 65, 177
PspOMI GGGCCC 1 cut(s) 63
PspPI GGNCC 5 cut(s) 63, 64, 175, 277, 1235
PspPPI RGGWCCY 1 cut(s) 175
PsrI GAACNNNNNNTAC 2 cut(s) 239, 271
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 4 cut(s) 41, 561, 653, 1334
SaqAI TTAA 2 cut(s) 357, 851
SatI GCNGC 4 cut(s) 286, 672, 799, 842
Sau3AI GATC 2 cut(s) 237, 982
Sau96I GGNCC 5 cut(s) 63, 64, 175, 277, 1235
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 305, 1239
SduI GDGCHC 4 cut(s) 53, 67, 660, 1095
SfaNI GCATC 5 cut(s) 252, 610, 702, 828, 1075
SfcI CTRYAG 1 cut(s) 322
SinI GGWCC 2 cut(s) 175, 1235
SmiMI CAYNNNNRTG 4 cut(s) 41, 561, 653, 1334
SmlI CTYRAG 2 cut(s) 614, 1094
SmoI CTYRAG 2 cut(s) 614, 1094
Sse9I AATT 6 cut(s) 266, 345, 362, 848, 1008, 1110
SsiI CCGC 5 cut(s) 15, 116, 179, 283, 809
SspMI CTAG 3 cut(s) 57, 183, 696
StyD4I CCNGG 2 cut(s) 303, 1237
StyI CCWWGG 3 cut(s) 56, 182, 1171
TaaI ACNGT 4 cut(s) 43, 532, 1003, 1033
TaiI ACGT 3 cut(s) 165, 868, 912
TaqI TCGA 2 cut(s) 240, 431
TasI AATT 6 cut(s) 266, 345, 362, 848, 1008, 1110
TfiI GAWTC 2 cut(s) 400, 428
Tru1I TTAA 2 cut(s) 357, 851
Tru9I TTAA 2 cut(s) 357, 851
TscAI CASTG 3 cut(s) 897, 1036, 1191
TseFI GTSAC 5 cut(s) 404, 436, 478, 580, 1186
TseI GCWGC 4 cut(s) 285, 671, 798, 841
Tsp45I GTSAC 5 cut(s) 404, 436, 478, 580, 1186
TspDTI ATGAA 7 cut(s) 327, 375, 766, 941, 1067, 1103, 1160
TspGWI ACGGA 2 cut(s) 735, 1120
TspRI CASTG 3 cut(s) 897, 1036, 1191
Van91I CCANNNNNTGG 1 cut(s) 489
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 175, 1235
VspI ATTAAT 1 cut(s) 851
XagI CCTNNNNNAGG 1 cut(s) 1075
XapI RAATTY 1 cut(s) 1110
XceI RCATGY 2 cut(s) 581, 767
XmaJI CCTAGG 2 cut(s) 56, 182
XspI CTAG 3 cut(s) 57, 183, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.