pycom16g07040

Galactoside-binding lectin

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
4564680 .. 4565840
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07040.2

Sequence Viewer

Length: 951 bp
ATGAAGCGACGCAAGTTCGATTCCTTGCTGCCGCCGAGTCGACTCAGAATGTTTCAGGTTTTATTTGGGGCAGTGTTCGTCTACTTGCTCCTGATCAGCTTCAAAATACCCCATGTTTTGAAATCCGGGTTCGGGTCGTCGGGTTTGGACGACGGGCTGCTCGAGACACTGGAGGACGCATTTCCCATGACGTTTTGGCTCGAGAGCGAGGAGGAAATGGGCGAGAGGGACGCCCCGAGCAGGCCGGCGGGGGACACGTTTCGGGTCTCCGGCGGCTCACCGTACCGGACTCCCCAGCGGCAAATGCGGGAGGTCAAGAAAGTTTCCGGCTTGGTGTTCGAGGACACTCTGTTCGGCGGCAATGTCAGTAAGGACCAAGTCTCCGAGCTTCACAGAACTACCAAGAGCGCTTGGGCAGCTGGGAAGGAGCTGTGGGCGGAGCTTGAGGCCAGAAAGCTTGAGTCTGACCTGGAGACCAAGCCCGAGAACCGCTCCGATCCGTGCCCGGGCTCGTTTTTTCTGTCCGGGTCCCAATTCGAGTCCCTGAAACGGGTAATGGTTATTCCCTGCGGGATGACTCTCGGGTCTCACATAACGGTGGTGGGCACGCCGAGGTGGGCCCACTCGGAGTACGACCCGAAGATTGCGATACTGAAGGAGGGGGACGAGGCGGTGATGGTCTCTCAGTTTATGATGGAGTTGCAGGGTTTGAAGAACGTGGAGGGGGAGGACCCGCCGAGGATACTGCATTTCAATCCGAGGTTGAAGGGGGATTGGAGTGGGAAGCCGGTGATCGAGCAGAACACTTGTTACCGGATGCAATGGGGGTCGGCCCTCCGCTGCGAGGGGTGGAAGTCCCTGGCTGATGAAGATACCTTTGATGGACAGGTGAAATGTGAGAAATGGATTCGTGACGATGACAATAAGTCGGAAGAATTGAAGGTCACATGA

Protein Analysis

317

Amino Acids

35.76

Weight (kDa)

5.48

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010823)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 492
AccI GTMKAC 2 cut(s) 40, 81
AclWI GGATC 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 284, 632
AfeI AGCGCT 1 cut(s) 409
AfiI CCNNNNNNNGG 6 cut(s) 132, 240, 506, 549, 550, 844
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 6 cut(s) 103, 121, 712, 754, 766, 940
AhdI GACNNNNNGTC 1 cut(s) 925
AjnI CCWGG 2 cut(s) 468, 858
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
AluBI AGCT 6 cut(s) 99, 388, 419, 430, 442, 457
AluI AGCT 6 cut(s) 99, 388, 419, 430, 442, 457
Alw26I GTCTC 6 cut(s) 158, 271, 385, 467, 591, 685
AlwI GGATC 1 cut(s) 491
Ama87I CYCGRG 6 cut(s) 161, 200, 235, 482, 505, 581
Aor51HI AGCGCT 1 cut(s) 409
AoxI GGCC 4 cut(s) 242, 447, 618, 831
ApaI GGGCCC 1 cut(s) 622
ApeKI GCWGC 4 cut(s) 28, 157, 416, 840
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 6 cut(s) 373, 528, 618, 619, 730, 832
AsuC2I CCSGG 4 cut(s) 127, 506, 507, 526
AsuHPI GGTGA 4 cut(s) 270, 685, 802, 901
AvaI CYCGRG 6 cut(s) 161, 200, 235, 482, 505, 581
AvaII GGWCC 3 cut(s) 373, 528, 730
BaeGI GKGCMC 3 cut(s) 506, 608, 622
BanII GRGCYC 2 cut(s) 512, 622
BbvI GCAGC 4 cut(s) 15, 144, 428, 827
BccI CCATC 3 cut(s) 670, 688, 875
BcgI CGANNNNNNTGC 2 cut(s) 727, 761
BciT130I CCWGG 2 cut(s) 470, 860
BciVI GTATCC 1 cut(s) 735
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 4 cut(s) 127, 506, 507, 526
BcoDI GTCTC 6 cut(s) 158, 271, 385, 467, 591, 685
BfoI RGCGCY 1 cut(s) 411
BfuI GTATCC 1 cut(s) 735
BisI GCNGC 8 cut(s) 29, 32, 158, 274, 299, 358, 417, 841
BlsI GCNGC 8 cut(s) 30, 33, 159, 275, 300, 359, 418, 842
Bme1390I CCNGG 6 cut(s) 127, 470, 506, 507, 526, 860
Bme18I GGWCC 3 cut(s) 373, 528, 730
BmeRI GACNNNNNGTC 1 cut(s) 925
BmeT110I CYCGRG 6 cut(s) 161, 200, 235, 482, 505, 581
BmgT120I GGNCC 6 cut(s) 373, 528, 618, 619, 730, 832
BmiI GGNNCC 4 cut(s) 529, 530, 620, 732
BmrFI CCNGG 6 cut(s) 127, 470, 506, 507, 526, 860
BmsI GCATC 1 cut(s) 807
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpmI CTGGAG 2 cut(s) 191, 491
BpuEI CTTGAG 2 cut(s) 464, 479
BpuMI CCSGG 4 cut(s) 127, 506, 507, 526
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 4 cut(s) 271, 467, 591, 685
BsaJI CCNNGG 5 cut(s) 505, 611, 737, 758, 858
BsaWI WCCGGW 2 cut(s) 285, 813
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 240, 506, 549, 550, 844
Bse118I RCCGGY 2 cut(s) 244, 787
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 2 cut(s) 367, 827
BseBI CCWGG 2 cut(s) 470, 860
BseDI CCNNGG 5 cut(s) 505, 611, 737, 758, 858
BseGI GGATG 2 cut(s) 579, 822
BseLI CCNNNNNNNGG 6 cut(s) 132, 240, 506, 549, 550, 844
BseMI GCAATG 2 cut(s) 367, 827
BseMII CTCAG 2 cut(s) 58, 698
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 224
BseSI GKGCMC 3 cut(s) 506, 608, 622
BseXI GCAGC 4 cut(s) 15, 144, 428, 827
BseYI CCCAGC 2 cut(s) 294, 419
BshFI GGCC 4 cut(s) 244, 449, 620, 833
BsiHKCI CYCGRG 6 cut(s) 161, 200, 235, 482, 505, 581
BsiSI CCGG 9 cut(s) 126, 245, 270, 286, 327, 506, 525, 788, 814
BslFI GGGAC 6 cut(s) 242, 266, 514, 526, 677, 841
BslI CCNNNNNNNGG 6 cut(s) 132, 240, 506, 549, 550, 844
BsmAI GTCTC 6 cut(s) 158, 271, 385, 467, 591, 685
BsmFI GGGAC 6 cut(s) 242, 266, 514, 526, 677, 841
BsnI GGCC 4 cut(s) 244, 449, 620, 833
Bso31I GGTCTC 4 cut(s) 271, 467, 591, 685
BsoBI CYCGRG 6 cut(s) 161, 200, 235, 482, 505, 581
Bsp120I GGGCCC 1 cut(s) 618
Bsp1286I GDGCHC 4 cut(s) 506, 512, 608, 622
Bsp143I GATC 3 cut(s) 93, 496, 792
BspANI GGCC 4 cut(s) 244, 449, 620, 833
BspCNI CTCAG 2 cut(s) 57, 697
BspLI GGNNCC 4 cut(s) 529, 530, 620, 732
BspPI GGATC 1 cut(s) 491
BspTNI GGTCTC 4 cut(s) 271, 467, 591, 685
BsrBI CCGCTC 1 cut(s) 492
BsrDI GCAATG 2 cut(s) 367, 827
BsrFI RCCGGY 2 cut(s) 244, 787
BsrI ACTGG 1 cut(s) 174
BssAI RCCGGY 2 cut(s) 244, 787
BssECI CCNNGG 5 cut(s) 505, 611, 737, 758, 858
BssMI GATC 3 cut(s) 93, 496, 792
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 2 cut(s) 470, 860
Bst4CI ACNGT 2 cut(s) 282, 598
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 242, 246, 608
BstDEI CTNAG 2 cut(s) 44, 684
BstF5I GGATG 2 cut(s) 579, 822
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 3 cut(s) 96, 499, 795
BstMAI GTCTC 6 cut(s) 158, 271, 385, 467, 591, 685
BstMBI GATC 3 cut(s) 93, 496, 792
BstMWI GCNNNNNNNGC 2 cut(s) 304, 416
BstNI CCWGG 2 cut(s) 470, 860
BstSCI CCNGG 6 cut(s) 125, 468, 504, 505, 524, 858
BstSLI GKGCMC 3 cut(s) 506, 608, 622
BstV1I GCAGC 4 cut(s) 15, 144, 428, 827
BsuI GTATCC 1 cut(s) 735
BsuRI GGCC 4 cut(s) 244, 449, 620, 833
BtsCI GGATG 2 cut(s) 579, 822
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 167
Cac8I GCNNGC 3 cut(s) 242, 246, 608
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 2 cut(s) 244, 787
Cfr13I GGNCC 6 cut(s) 373, 528, 618, 619, 730, 832
Cfr9I CCCGGG 1 cut(s) 505
CseI GACGC 3 cut(s) 18, 185, 239
Csp6I GTAC 2 cut(s) 283, 631
CviAII CATG 3 cut(s) 113, 187, 948
CviQI GTAC 2 cut(s) 283, 631
DdeI CTNAG 2 cut(s) 44, 684
DpnI GATC 3 cut(s) 95, 498, 794
DpnII GATC 3 cut(s) 93, 496, 792
DrdI GACNNNNNNGTC 1 cut(s) 583
DriI GACNNNNNGTC 1 cut(s) 925
DseDI GACNNNNNNGTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 1 cut(s) 925
EciI GGCGGA 1 cut(s) 452
Eco24I GRGCYC 2 cut(s) 512, 622
Eco31I GGTCTC 4 cut(s) 271, 467, 591, 685
Eco47I GGWCC 3 cut(s) 373, 528, 730
Eco47III AGCGCT 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 674
Eco88I CYCGRG 6 cut(s) 161, 200, 235, 482, 505, 581
EcoO109I RGGNCCY 2 cut(s) 528, 730
EcoRII CCWGG 2 cut(s) 468, 858
EcoT38I GRGCYC 2 cut(s) 512, 622
FaeI CATG 3 cut(s) 116, 190, 951
FaiI YATR 5 cut(s) 114, 188, 593, 692, 949
FaqI GGGAC 6 cut(s) 242, 266, 514, 526, 677, 841
FatI CATG 3 cut(s) 112, 186, 947
FauI CCCGC 4 cut(s) 241, 300, 563, 741
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 2 cut(s) 40, 81
Fnu4HI GCNGC 8 cut(s) 29, 32, 158, 274, 299, 358, 417, 841
FokI GGATG 2 cut(s) 586, 829
FriOI GRGCYC 2 cut(s) 512, 622
Fsp4HI GCNGC 8 cut(s) 29, 32, 158, 274, 299, 358, 417, 841
GlaI GCGC 1 cut(s) 409
GluI GCNGC 8 cut(s) 29, 32, 158, 274, 299, 358, 417, 841
GsaI CCCAGC 2 cut(s) 298, 423
GsuI CTGGAG 2 cut(s) 191, 491
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 4 cut(s) 244, 449, 620, 833
HapII CCGG 9 cut(s) 126, 245, 270, 286, 327, 506, 525, 788, 814
HgaI GACGC 3 cut(s) 18, 185, 239
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 116, 190, 951
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 8 cut(s) 20, 37, 42, 289, 461, 539, 577, 907
HpaII CCGG 9 cut(s) 126, 245, 270, 286, 327, 506, 525, 788, 814
HphI GGTGA 4 cut(s) 270, 685, 802, 901
Hpy166II GTNNAC 2 cut(s) 41, 82
Hpy188I TCNGA 7 cut(s) 47, 385, 466, 496, 628, 759, 931
Hpy188III TCNNGA 5 cut(s) 91, 163, 202, 316, 911
Hpy8I GTNNAC 2 cut(s) 41, 82
Hpy99I CGWCG 3 cut(s) 12, 142, 155
HpyAV CCTTC 4 cut(s) 418, 649, 760, 934
HpyCH4III ACNGT 2 cut(s) 282, 598
HpyCH4IV ACGT 3 cut(s) 191, 257, 717
HpyCH4V TGCA 3 cut(s) 703, 748, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 416
HpyF3I CTNAG 2 cut(s) 44, 684
HpySE526I ACGT 3 cut(s) 191, 257, 717
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 116, 190, 951
HspAI GCGC 1 cut(s) 408
KflI GGGWCCC 1 cut(s) 528
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 496, 792
LmnI GCTCC 4 cut(s) 93, 427, 439, 497
Lsp1109I GCAGC 4 cut(s) 15, 144, 428, 827
LweI GCATC 1 cut(s) 807
MaeII ACGT 3 cut(s) 191, 257, 717
MaeIII GTNAC 3 cut(s) 809, 911, 943
MalI GATC 3 cut(s) 95, 498, 794
MbiI CCGCTC 1 cut(s) 492
MboI GATC 3 cut(s) 93, 496, 792
MboII GAAGA 4 cut(s) 652, 724, 881, 944
MhlI GDGCHC 4 cut(s) 506, 512, 608, 622
MluCI AATT 2 cut(s) 533, 935
MlyI GAGTC 6 cut(s) 36, 46, 283, 470, 548, 571
MmeI TCCRAC 1 cut(s) 909
MroNI GCCGGC 1 cut(s) 244
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 3 cut(s) 298, 419, 840
MspI CCGG 9 cut(s) 126, 245, 270, 286, 327, 506, 525, 788, 814
MspR9I CCNGG 6 cut(s) 127, 470, 506, 507, 526, 860
MvaI CCWGG 2 cut(s) 470, 860
MwoI GCNNNNNNNGC 2 cut(s) 304, 416
NaeI GCCGGC 1 cut(s) 246
NciI CCSGG 4 cut(s) 127, 506, 507, 526
NdeII GATC 3 cut(s) 93, 496, 792
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 3 cut(s) 116, 190, 951
NlaIV GGNNCC 4 cut(s) 529, 530, 620, 732
NmeAIII GCCGAG 3 cut(s) 60, 636, 762
NmuCI GTSAC 2 cut(s) 911, 943
PaeR7I CTCGAG 2 cut(s) 161, 200
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 20, 907
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 8 cut(s) 30, 33, 159, 275, 300, 359, 418, 842
PleI GAGTC 6 cut(s) 36, 45, 283, 469, 547, 571
PpsI GAGTC 6 cut(s) 36, 45, 283, 469, 547, 571
PpuMI RGGWCCY 2 cut(s) 528, 730
Psp5II RGGWCCY 2 cut(s) 528, 730
Psp6I CCWGG 2 cut(s) 468, 858
PspFI CCCAGC 2 cut(s) 294, 419
PspGI CCWGG 2 cut(s) 468, 858
PspN4I GGNNCC 4 cut(s) 529, 530, 620, 732
PspOMI GGGCCC 1 cut(s) 618
PspPI GGNCC 6 cut(s) 373, 528, 618, 619, 730, 832
PspPPI RGGWCCY 2 cut(s) 528, 730
PsrI GAACNNNNNNTAC 2 cut(s) 794, 826
PsyI GACNNNGTC 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 284, 632
RsaNI GTAC 2 cut(s) 283, 631
RseI CAYNNNNRTG 1 cut(s) 596
SalI GTCGAC 1 cut(s) 39
SatI GCNGC 8 cut(s) 29, 32, 158, 274, 299, 358, 417, 841
Sau3AI GATC 3 cut(s) 93, 496, 792
Sau96I GGNCC 6 cut(s) 373, 528, 618, 619, 730, 832
SchI GAGTC 6 cut(s) 36, 46, 283, 470, 548, 571
ScrFI CCNGG 6 cut(s) 127, 470, 506, 507, 526, 860
SduI GDGCHC 4 cut(s) 506, 512, 608, 622
SfaNI GCATC 1 cut(s) 807
Sfr274I CTCGAG 2 cut(s) 161, 200
SinI GGWCC 3 cut(s) 373, 528, 730
SlaI CTCGAG 2 cut(s) 161, 200
SmaI CCCGGG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 4 cut(s) 161, 200, 443, 458
SmoI CTYRAG 4 cut(s) 161, 200, 443, 458
SrfI GCCCGGGC 1 cut(s) 507
Sse9I AATT 2 cut(s) 533, 935
StyD4I CCNGG 6 cut(s) 125, 468, 504, 505, 524, 858
TaaI ACNGT 2 cut(s) 282, 598
TaiI ACGT 3 cut(s) 194, 260, 720
TaqI TCGA 7 cut(s) 18, 40, 162, 201, 339, 537, 795
TasI AATT 2 cut(s) 533, 935
TauI GCSGC 4 cut(s) 34, 276, 301, 360
TfiI GAWTC 2 cut(s) 20, 907
TscAI CASTG 2 cut(s) 78, 174
TseFI GTSAC 2 cut(s) 911, 943
TseI GCWGC 4 cut(s) 28, 157, 416, 840
Tsp45I GTSAC 2 cut(s) 911, 943
TspDTI ATGAA 2 cut(s) 17, 882
TspGWI ACGGA 1 cut(s) 489
TspMI CCCGGG 1 cut(s) 505
TspRI CASTG 2 cut(s) 78, 174
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 3 cut(s) 373, 528, 730
XhoI CTCGAG 2 cut(s) 161, 200
XmaI CCCGGG 1 cut(s) 505
XmiI GTMKAC 2 cut(s) 40, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.