Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010823

Physical Location & Seq

Genomic Coordinates Reverse (-)

53206443 .. 53207987

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0359600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTGGTGTTGCAGACAGTGTGTACACAAGTCCTAATGAAGAAGAGAATGAGATGAGAAAAGGGCCATGGACGCTTGACGAAGACACCCTGCTCATACATTACATTGCCAACCACGGCGAAGGACATTGGAATGCCTTAGCAAAATGTGCAGGATTGAAGAGGACAGGAAAAAGCTGCAGATTAAGATGGTTGAATTATTTGAAACCTGACATCAAGCGTGGGAACCTCACTCCACAAGAACAACTCTTGATCCTTGAACTCCATGCCAAGTGGGGTAACAGGTGGTCGAAAATAGCACAACATTTGCCAGGAAGAACAGACAATGAGATTAAGAACTACTGGAGAACAAGGGTGCAAAAACAAGCGCGCCAACTTAATATTGAGTCTAATAGCAAGAGGTTTCTTGATGCGGTTCGATGTTTCTGGATGCCGACTTTGCGTCAGAAGATGGAGCAAACTTCTTCACTTAGTTTAGACCCACCTTCTTCTTCTTCTTCTCATTCTAATTACTTGACTTCTCAGATCTCTATAGCTCCTTCTCTGTCGACGTCTCCTCAAACTTGCTCGGTTCCTTCTTCTCCACCAAGCAAGGTGGTCTCACACGTATCTGATTATTCCCCAATTGGAACTTCAAGCCCAAGTCATAATAGTCTTTCCTCGGATTCTCTTATTTCACAGCTGCCTCAAATTACAGAACAACCAGCAAGTTCATCCTATGCCTTTGAAGCTCTAAATGACAATTATTATGTGGACTATGACATGGAGGGTTTTAGCCTTGACCCTGTTTCAGAAATGGCAACTTTTGACACTTCACAGTTTGATTGCCAGATGGCAGAAAGCGATTGGATACCAAGCAATTACATGACTGACACTTTATGGAACATGCAGGGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048519 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0070085 GO:0071554 GO:0071704 GO:1900055 GO:1900056 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905622 GO:1990714 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal-bind_lectin Galactosyl_T

Protein Analysis

299

Amino Acids

33.75

Weight (kDa)

5.62

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	21 - 68	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	24 - 81	5.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	74 - 117	7.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 124	2.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27120 AT1G27120
fragaria_vesca	FvH4_4g35520 FvH4_4g35520 FvH4_4g35520
malus_domestica	MD13G1082500.v1.1 MD16G1081600.v1.1
prunus_persica	Prupe.1G264500_v2.0.a1 Prupe.1G264500_v2.0.a1
pyrus_communis	pycom16g07040
rosa_chinensis	RchiOBHm_Chr4g0445171
rosa_laevigata	RLG00000005761
rosa_multiflora	Rmu_sc0000050.1_g000038
rosa_roxburghii	Rroxscaffold_5G00385680
rosa_rugosa	Rorug04G0359600
rosa_samantha	Rh4AG420400 Rh4BG432300 Rh4CG446900 Rh4DG428400
rosa_wichuraiana	Rw4G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	1 cut(s)	370
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	6 cut(s)	160, 196, 205, 260, 636, 728
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AluBI	AGCT	4 cut(s)	177, 536, 682, 731
AluI	AGCT	4 cut(s)	177, 536, 682, 731
Alw26I	GTCTC	2 cut(s)	558, 604
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	177, 682
AspLEI	GCGC	2 cut(s)	370, 372
AspS9I	GGNCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	164, 669
BccI	CCATC	3 cut(s)	183, 445, 826
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	558, 604
BfmI	CTRYAG	2 cut(s)	178, 531
BfuI	GTATCC	1 cut(s)	843
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	2 cut(s)	178, 683
BlsI	GCNGC	2 cut(s)	179, 684
Bme1390I	CCNGG	1 cut(s)	312
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	227, 573
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	400, 420
BpiI	GAAGAC	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	364
Bpu10I	CCTNAGC	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	68, 115, 660
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	68, 115, 660
BseGI	GGATG	3 cut(s)	435, 713, 900
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	1 cut(s)	347
BsePI	GCGCGC	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	164, 669
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	558, 604
BsmBI	CGTCTC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	604
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	252, 525
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	227, 573
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	68, 115, 660
BssHII	GCGCGC	1 cut(s)	368
BssMI	GATC	2 cut(s)	252, 525
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	20, 819
Bst6I	CTCTTC	2 cut(s)	39, 155
BstACI	GRCGYC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	139, 470, 522
BstDSI	CCRYGG	2 cut(s)	68, 115
BstF5I	GGATG	3 cut(s)	435, 713, 900
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	370, 372
BstKTI	GATC	2 cut(s)	255, 528
BstMAI	GTCTC	2 cut(s)	558, 604
BstMBI	GATC	2 cut(s)	252, 525
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 73, 149, 439, 728
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	2 cut(s)	178, 531
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	164, 669
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	843
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	2 cut(s)	68, 115
BtsCI	GGATG	3 cut(s)	435, 713, 900
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	2 cut(s)	370, 372
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	2 cut(s)	82, 431
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	5 cut(s)	69, 266, 763, 865, 886
CviJI	RGCY	8 cut(s)	5, 67, 177, 536, 639, 682, 731, 777
CviKI_1	RGCY	8 cut(s)	5, 67, 177, 536, 639, 682, 731, 777
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	139, 470, 522
DpnI	GATC	2 cut(s)	254, 527
DpnII	GATC	2 cut(s)	252, 525
DriI	GACNNNNNGTC	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	39, 155
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	2 cut(s)	39, 155
Eco130I	CCWWGG	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	5 cut(s)	72, 269, 766, 868, 889
FatI	CATG	5 cut(s)	68, 265, 762, 864, 885
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	2 cut(s)	178, 683
FokI	GGATG	2 cut(s)	442, 700
Fsp4HI	GCNGC	2 cut(s)	178, 683
GlaI	GCGC	2 cut(s)	369, 371
GluI	GCNGC	2 cut(s)	178, 683
GsuI	CTGGAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	67
HgaI	GACGC	2 cut(s)	82, 431
HhaI	GCGC	2 cut(s)	370, 372
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	5 cut(s)	72, 269, 766, 868, 889
Hin6I	GCGC	2 cut(s)	368, 370
HinP1I	GCGC	2 cut(s)	368, 370
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	2 cut(s)	386, 665
Hpy166II	GTNNAC	4 cut(s)	25, 27, 549, 754
Hpy188I	TCNGA	5 cut(s)	447, 525, 613, 664, 793
Hpy188III	TCNNGA	3 cut(s)	250, 407, 427
Hpy8I	GTNNAC	4 cut(s)	25, 27, 549, 754
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	4 cut(s)	116, 495, 549, 585
HpyCH4III	ACNGT	2 cut(s)	20, 819
HpyCH4IV	ACGT	2 cut(s)	551, 606
HpyCH4V	TGCA	5 cut(s)	14, 152, 180, 358, 889
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 73, 149, 439, 728
HpyF3I	CTNAG	3 cut(s)	139, 470, 522
HpySE526I	ACGT	2 cut(s)	551, 606
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	5 cut(s)	72, 269, 766, 868, 889
HspAI	GCGC	2 cut(s)	368, 370
Kzo9I	GATC	2 cut(s)	252, 525
LmnI	GCTCC	2 cut(s)	454, 541
Lsp1109I	GCAGC	2 cut(s)	164, 669
LweI	GCATC	2 cut(s)	400, 420
MaeII	ACGT	2 cut(s)	551, 606
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	254, 527
MboI	GATC	2 cut(s)	252, 525
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	525
MluCI	AATT	6 cut(s)	196, 508, 624, 690, 742, 859
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	156, 239, 393, 567, 670, 696, 760
MseI	TTAA	3 cut(s)	185, 333, 378
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	682
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	5 cut(s)	11, 73, 149, 439, 728
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	252, 525
NlaIII	CATG	5 cut(s)	72, 269, 766, 868, 889
NlaIV	GGNNCC	2 cut(s)	227, 573
NspI	RCATGY	1 cut(s)	889
PauI	GCGCGC	1 cut(s)	368
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	665
PkrI	GCNGC	2 cut(s)	179, 684
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	227, 573
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	525
PteI	GCGCGC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	185, 333, 378
SatI	GCNGC	2 cut(s)	178, 683
Sau3AI	GATC	2 cut(s)	252, 525
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	312
SfaNI	GCATC	2 cut(s)	400, 420
SfcI	CTRYAG	2 cut(s)	178, 531
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	6 cut(s)	196, 508, 624, 690, 742, 859
SsiI	CCGC	1 cut(s)	413
SspI	AATATT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	20, 819
TaiI	ACGT	2 cut(s)	554, 609
TaqI	TCGA	3 cut(s)	290, 418, 548
TasI	AATT	6 cut(s)	196, 508, 624, 690, 742, 859
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	3 cut(s)	185, 333, 378
Tru9I	TTAA	3 cut(s)	185, 333, 378
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	2 cut(s)	177, 682
TspDTI	ATGAA	2 cut(s)	54, 702
TspRI	CASTG	1 cut(s)	25
XceI	RCATGY	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.