Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010823

Physical Location & Seq

Genomic Coordinates Forward (+)

68201861 .. 68206080

Gene Structure 4220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG446900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGAAGCGACGCAAGTTCGACCCGGTGCTGTCTCACACTCGGCTGAGATTGCTTCAAATCCTCATGGCCACACTGTTGGTTTACTTTCTAATCACCAGCTTCGAAGCCCCGAAAACCGGGTGGGATTCCGGCGAGGAATACGACGCCTCGTTCGAGCTGTTTAGCGACTCGTCGTTGTCCAGAGAGGGGTTAACGGAAGCTTTGAGTAGGCCCACTGACGGCCCCCGGCTTCGAGGCTCGCCGTTTCAGACACCCGAGCGGAGAATGCGGGAGTCAAAGAGAGTCTCGGGTTTGGTTTTCGAGGAGGAGAAGACTCAGTTTGACGGAAATGTGAGTGAGGCGGACGAGGTTTTCGGGCTTCACAAGGCGGCCGCGGAGGCCTGGAGAGTGGGGAAGAAGCTCTGGGCCGAGATTGAGTCCGGCAAAATTGAATTGGACAAGTCCGAGAACCGGTCCGACCCGTGCCCGCATTCGTTTTCGGTAACCGGGTCCGAATTTCACGCCCGGAACCGGGTGATGGTGATCCCGTGCGGACTGACGCTGTGGTCGCACATTACGGTGGTGGGTACGCCGCGGTGGGCCCGCCCGGAGTATGATCCGAAGATTGCGGTGGTGAAGGAGGGGGAGGAGGCGGTGATGGTTTCGCAGTTCATGATGGAACTGCAGGGGTTGAAGAATGTGGAGGGGGAGGACCCGCCGAGAATATTGCATTTCAATCCGAGATTAAAGGGGGATTGGAGTAACAAGCCGGTGATTGAGCACAACACTTGTTATAGGATGCAATGGGGTTCGGCGCTCCGGTGTGAGGGCTGGCAATCCCGGGCTGATGAAGAAACCGTTGATGGACTGGTGAAATGCGAGAAGTGGATTCGTGATGATGATGATCGCTCGGAAGAATCAAAGGCCATATGGTGGTTGAACAGGTTGATAGCAGGGACAAGGAAGGTGACCATAGACTGGCCGTACCCTTTTGTAGAGGGCAGGATGTTTGTACTCACCTTGAGTGCTGGCTTGGAAGGTTATCATATCAATGTTGATGGTAGACATGTCACTTCTTTCCCTTATCGCACGGGATTTGTTCTCGAGGATGCCACCGGACTGTTTGTAAATGGAGATGTTGATGTGCACTCTGTCTATGCTGCCTCCTTACCTACATCACATCCTAGTTTTGCTCCACAGTTGCATCTTGAGATGGTTACTAAGTGGAAGGCTCCACCTCTTCCCTATGGGCATGTGGAGTTGTTCATTGGCATTCTTTCTGCTGGCAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCCTGGATGCAGCATAAGTTAGTCAAGTCTTCACGTGTTGTTGCTCGTTTTTTTGTAGCATTGCATGGTAGAAAGGAAGTAAACCTGGAGCTAATGAAAGAAGTAGAGTATTTTGGTGACATTGTTATAGTTCCTTATATGGATAACTATGATCTTGTAGTACTGAAGACCATAGCAATTTGTGAATATGGGGTTAGAACAGTGCCTGCAAAGTATATCATGAAGTGTGATGATGACACCTTTGTCCGGGTGGATGCTGTGCTCAAGGAAGCACGGAAAGCGCGTAAACATAGAAGCCTATATATAGGAAATTTGAACTACCACCACAAGCCTCTTCGTTATGGTAAATGGGCAGTGACATATGAGGTATCAATGATTCTGCTCTTGTCCATTCATTTTAAAGACAATTTCTATATGTTGAACTTGATGCGCAACTTATACAGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009791 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048354 GO:0048359 GO:0048519 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0070085 GO:0071554 GO:0071704 GO:1900055 GO:1900056 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1905622 GO:1990714 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal-bind_lectin Galactosyl_T

Protein Analysis

582

Amino Acids

66.9

Weight (kDa)

7.33

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gal-bind_lectin	PF00337	172 - 379	1.3e-26	Galactoside-binding lectin
Galactosyl_T	PF01762	427 - 539	3.1e-19	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27120 AT1G27120
fragaria_vesca	FvH4_4g35520 FvH4_4g35520 FvH4_4g35520
malus_domestica	MD13G1082500.v1.1 MD16G1081600.v1.1
prunus_persica	Prupe.1G264500_v2.0.a1 Prupe.1G264500_v2.0.a1
pyrus_communis	pycom16g07040
rosa_chinensis	RchiOBHm_Chr4g0445171
rosa_laevigata	RLG00000005761
rosa_multiflora	Rmu_sc0000050.1_g000038
rosa_roxburghii	Rroxscaffold_5G00385680
rosa_rugosa	Rorug04G0359600
rosa_samantha	Rh4AG420400 Rh4BG432300 Rh4CG446900 Rh4DG428400
rosa_wichuraiana	Rw4G036050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1747
AasI	GACNNNNNNGTC	2 cut(s)	544, 1541
Acc16I	TGCGCA	1 cut(s)	1730
AccB7I	CCANNNNNTGG	2 cut(s)	912, 957
AccBSI	CCGCTC	2 cut(s)	259, 1282
AccI	GTMKAC	1 cut(s)	1042
AccII	CGCG	3 cut(s)	374, 574, 1582
AclWI	GGATC	2 cut(s)	517, 590
AcoI	YGGCCR	3 cut(s)	66, 369, 959
AcsI	RAATTY	2 cut(s)	494, 1609
AcuI	CTGAAG	1 cut(s)	1484
AcvI	CACGTG	1 cut(s)	1334
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	4 cut(s)	568, 965, 993, 1461
AflIII	ACRYGT	2 cut(s)	1045, 1333
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	7 cut(s)	56, 431, 673, 715, 919, 1615, 1720
AjnI	CCWGG	3 cut(s)	380, 1301, 1383
AluBI	AGCT	5 cut(s)	99, 157, 200, 400, 1390
AluI	AGCT	5 cut(s)	99, 157, 200, 400, 1390
Alw21I	GWGCWC	3 cut(s)	762, 1128, 1563
Alw26I	GTCTC	2 cut(s)	36, 289
Alw44I	GTGCAC	1 cut(s)	1124
AlwI	GGATC	2 cut(s)	517, 590
AlwNI	CAGNNNCTG	1 cut(s)	1505
Ama87I	CYCGRG	4 cut(s)	254, 286, 819, 1082
AoxI	GGCC	9 cut(s)	66, 209, 220, 369, 378, 405, 579, 903, 959
ApaI	GGGCCC	1 cut(s)	583
ApaLI	GTGCAC	1 cut(s)	1124
ApeKI	GCWGC	2 cut(s)	1139, 1309
ApoI	RAATTY	2 cut(s)	494, 1609
ArsI	GACNNNNNNTTYG	4 cut(s)	134, 166, 335, 367
AsiGI	ACCGGT	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	796, 1582, 1731
AspS9I	GGNCC	8 cut(s)	210, 221, 405, 453, 489, 579, 580, 691
AsuII	TTCGAA	1 cut(s)	102
AvaI	CYCGRG	4 cut(s)	254, 286, 819, 1082
AvaII	GGWCC	3 cut(s)	453, 489, 691
BaeGI	GKGCMC	3 cut(s)	467, 583, 1128
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	583
BbrPI	CACGTG	1 cut(s)	1334
BbsI	GAAGAC	3 cut(s)	317, 1320, 1472
Bbv12I	GWGCWC	3 cut(s)	762, 1128, 1563
BbvI	GCAGC	2 cut(s)	1126, 1321
BccI	CCATC	7 cut(s)	511, 631, 649, 836, 1031, 1186, 1279
BceAI	ACGGC	3 cut(s)	226, 235, 946
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BciT130I	CCWGG	3 cut(s)	382, 1303, 1385
BcoDI	GTCTC	2 cut(s)	36, 289
BfaI	CTAG	1 cut(s)	1164
BfmI	CTRYAG	1 cut(s)	662
BfoI	RGCGCY	1 cut(s)	797
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	369, 372, 572, 1140, 1310
BlpI	GCTNAGC	1 cut(s)	1278
BlsI	GCNGC	5 cut(s)	370, 373, 573, 1141, 1311
BmcAI	AGTACT	1 cut(s)	1461
Bme18I	GGWCC	3 cut(s)	453, 489, 691
BmeT110I	CYCGRG	4 cut(s)	254, 286, 819, 1082
BmgT120I	GGNCC	8 cut(s)	210, 221, 405, 453, 489, 579, 580, 691
BmiI	GGNNCC	6 cut(s)	223, 490, 509, 581, 693, 1212
BmsI	GCATC	6 cut(s)	768, 1078, 1192, 1296, 1543, 1716
BpiI	GAAGAC	3 cut(s)	317, 1320, 1472
BpmI	CTGGAG	2 cut(s)	403, 1406
Bpu1102I	GCTNAGC	1 cut(s)	1278
Bpu14I	TTCGAA	1 cut(s)	102
BpuEI	CTTGAG	3 cut(s)	1021, 1208, 1547
BsaAI	YACGTR	1 cut(s)	1334
BsaBI	GATNNNNATC	2 cut(s)	521, 882
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	4 cut(s)	224, 372, 572, 819
BsaWI	WCCGGW	3 cut(s)	450, 798, 1094
Bse118I	RCCGGY	2 cut(s)	450, 748
Bse1I	ACTGG	2 cut(s)	852, 962
Bse3DI	GCAATG	2 cut(s)	788, 1358
Bse8I	GATNNNNATC	2 cut(s)	521, 882
BseBI	CCWGG	3 cut(s)	382, 1303, 1385
BseDI	CCNNGG	4 cut(s)	224, 372, 572, 819
BseGI	GGATG	7 cut(s)	783, 990, 1093, 1159, 1290, 1311, 1558
BseJI	GATNNNNATC	2 cut(s)	521, 882
BseMI	GCAATG	2 cut(s)	788, 1358
BseMII	CTCAG	3 cut(s)	35, 329, 1269
BseNI	ACTGG	2 cut(s)	852, 962
BseRI	GAGGAG	3 cut(s)	317, 320, 641
BseSI	GKGCMC	3 cut(s)	467, 583, 1128
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	1126, 1321
Bsh1236I	CGCG	3 cut(s)	374, 574, 1582
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	9 cut(s)	68, 211, 222, 371, 380, 407, 581, 905, 961
BshTI	ACCGGT	1 cut(s)	450
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	3 cut(s)	762, 1128, 1563
BsiHKCI	CYCGRG	4 cut(s)	254, 286, 819, 1082
BslFI	GGGAC	1 cut(s)	949
BsmAI	GTCTC	2 cut(s)	36, 289
BsmFI	GGGAC	1 cut(s)	949
BsmI	GAATGC	3 cut(s)	270, 469, 1251
BsnI	GGCC	9 cut(s)	68, 211, 222, 371, 380, 407, 581, 905, 961
BsoBI	CYCGRG	4 cut(s)	254, 286, 819, 1082
Bsp119I	TTCGAA	1 cut(s)	102
Bsp120I	GGGCCC	1 cut(s)	579
Bsp1286I	GDGCHC	5 cut(s)	467, 583, 762, 1128, 1563
Bsp143I	GATC	4 cut(s)	522, 595, 883, 1450
Bsp1720I	GCTNAGC	1 cut(s)	1278
BspANI	GGCC	9 cut(s)	68, 211, 222, 371, 380, 407, 581, 905, 961
BspCNI	CTCAG	3 cut(s)	36, 328, 1270
BspFNI	CGCG	3 cut(s)	374, 574, 1582
BspHI	TCATGA	2 cut(s)	651, 1518
BspLI	GGNNCC	6 cut(s)	223, 490, 509, 581, 693, 1212
BspMAI	CTGCAG	1 cut(s)	666
BspPI	GGATC	2 cut(s)	517, 590
BspT104I	TTCGAA	1 cut(s)	102
BsrBI	CCGCTC	2 cut(s)	259, 1282
BsrDI	GCAATG	2 cut(s)	788, 1358
BsrFI	RCCGGY	2 cut(s)	450, 748
BsrI	ACTGG	2 cut(s)	852, 962
BssAI	RCCGGY	2 cut(s)	450, 748
BssECI	CCNNGG	4 cut(s)	224, 372, 572, 819
BssMI	GATC	4 cut(s)	522, 595, 883, 1450
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	3 cut(s)	382, 1303, 1385
Bst4CI	ACNGT	7 cut(s)	75, 559, 838, 1101, 1179, 1501, 1742
Bst6I	CTCTTC	2 cut(s)	1224, 1638
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	1334
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	7 cut(s)	239, 467, 583, 812, 1009, 1264, 1506
BstDEI	CTNAG	4 cut(s)	44, 315, 1200, 1278
BstDSI	CCRYGG	2 cut(s)	372, 572
BstEII	GGTNACC	2 cut(s)	481, 946
BstF5I	GGATG	7 cut(s)	783, 990, 1093, 1159, 1290, 1311, 1558
BstFNI	CGCG	3 cut(s)	374, 574, 1582
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	3 cut(s)	796, 1582, 1731
BstKTI	GATC	4 cut(s)	525, 598, 886, 1453
BstMAI	GTCTC	2 cut(s)	36, 289
BstMBI	GATC	4 cut(s)	522, 595, 883, 1450
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 265, 377, 547, 1577
BstNI	CCWGG	3 cut(s)	382, 1303, 1385
BstNSI	RCATGY	2 cut(s)	1049, 1235
BstPI	GGTNACC	2 cut(s)	481, 946
BstSFI	CTRYAG	1 cut(s)	662
BstSLI	GKGCMC	3 cut(s)	467, 583, 1128
BstUI	CGCG	3 cut(s)	374, 574, 1582
BstV1I	GCAGC	2 cut(s)	1126, 1321
BstV2I	GAAGAC	3 cut(s)	317, 1320, 1472
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstZI	CGGCCG	1 cut(s)	369
BsuRI	GGCC	9 cut(s)	68, 211, 222, 371, 380, 407, 581, 905, 961
BtgI	CCRYGG	2 cut(s)	372, 572
BtsCI	GGATG	7 cut(s)	783, 990, 1093, 1159, 1290, 1311, 1558
BtsI	GCAGTG	1 cut(s)	1659
BtsIMutI	CAGTG	4 cut(s)	71, 213, 1506, 1659
Cac8I	GCNNGC	7 cut(s)	239, 467, 583, 812, 1009, 1264, 1506
CaiI	CAGNNNCTG	1 cut(s)	1505
CciI	TCATGA	2 cut(s)	651, 1518
CciNI	GCGGCCGC	1 cut(s)	369
CfoI	GCGC	3 cut(s)	796, 1582, 1731
Cfr10I	RCCGGY	2 cut(s)	450, 748
Cfr13I	GGNCC	8 cut(s)	210, 221, 405, 453, 489, 579, 580, 691
Cfr42I	CCGCGG	2 cut(s)	375, 575
Cfr9I	CCCGGG	1 cut(s)	819
CpoI	CGGWCCG	1 cut(s)	453
CseI	GACGC	3 cut(s)	18, 152, 547
Csp6I	GTAC	4 cut(s)	567, 964, 992, 1460
CspAI	ACCGGT	1 cut(s)	450
CspI	CGGWCCG	1 cut(s)	453
CviAII	CATG	6 cut(s)	64, 652, 1046, 1232, 1364, 1519
CviQI	GTAC	4 cut(s)	567, 964, 992, 1460
DdeI	CTNAG	4 cut(s)	44, 315, 1200, 1278
DpnI	GATC	4 cut(s)	524, 597, 885, 1452
DpnII	GATC	4 cut(s)	522, 595, 883, 1450
DraI	TTTAAA	1 cut(s)	1699
DrdI	GACNNNNNNGTC	2 cut(s)	544, 1541
DseDI	GACNNNNNNGTC	2 cut(s)	544, 1541
EaeI	YGGCCR	3 cut(s)	66, 369, 959
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	1224, 1638
EarI	CTCTTC	2 cut(s)	1224, 1638
EciI	GGCGGA	1 cut(s)	356
EclXI	CGGCCG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	583
Eco47I	GGWCC	3 cut(s)	453, 489, 691
Eco52I	CGGCCG	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	1484
Eco72I	CACGTG	1 cut(s)	1334
Eco88I	CYCGRG	4 cut(s)	254, 286, 819, 1082
Eco91I	GGTNACC	2 cut(s)	481, 946
EcoO109I	RGGNCCY	1 cut(s)	691
EcoO65I	GGTNACC	2 cut(s)	481, 946
EcoRII	CCWGG	3 cut(s)	380, 1301, 1383
EcoT38I	GRGCYC	1 cut(s)	583
FaeI	CATG	6 cut(s)	67, 655, 1049, 1235, 1367, 1522
FaqI	GGGAC	1 cut(s)	949
FatI	CATG	6 cut(s)	63, 651, 1045, 1231, 1363, 1518
FauI	CCCGC	4 cut(s)	261, 474, 590, 702
FauNDI	CATATG	2 cut(s)	908, 1660
FblI	GTMKAC	1 cut(s)	1042
Fnu4HI	GCNGC	5 cut(s)	369, 372, 572, 1140, 1310
FokI	GGATG	7 cut(s)	790, 997, 1100, 1146, 1297, 1318, 1565
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	5 cut(s)	369, 372, 572, 1140, 1310
FspBI	CTAG	1 cut(s)	1164
FspI	TGCGCA	1 cut(s)	1730
GlaI	GCGC	3 cut(s)	795, 1581, 1730
GluI	GCNGC	5 cut(s)	369, 372, 572, 1140, 1310
GsuI	CTGGAG	2 cut(s)	403, 1406
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	9 cut(s)	68, 211, 222, 371, 380, 407, 581, 905, 961
HgaI	GACGC	3 cut(s)	18, 152, 547
HhaI	GCGC	3 cut(s)	796, 1582, 1731
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	6 cut(s)	67, 655, 1049, 1235, 1367, 1522
Hin6I	GCGC	3 cut(s)	794, 1580, 1729
HinP1I	GCGC	3 cut(s)	794, 1580, 1729
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	9 cut(s)	125, 167, 272, 282, 313, 416, 868, 896, 1675
HpaI	GTTAAC	1 cut(s)	192
Hpy166II	GTNNAC	6 cut(s)	82, 192, 1043, 1126, 1381, 1586
Hpy188I	TCNGA	7 cut(s)	249, 445, 457, 493, 600, 720, 892
Hpy188III	TCNNGA	6 cut(s)	180, 652, 872, 1082, 1187, 1519
Hpy8I	GTNNAC	6 cut(s)	82, 192, 1043, 1126, 1381, 1586
Hpy99I	CGWCG	3 cut(s)	12, 146, 175
HpyAV	CCTTC	4 cut(s)	610, 937, 1010, 1201
HpyCH4III	ACNGT	7 cut(s)	75, 559, 838, 1101, 1179, 1501, 1742
HpyCH4IV	ACGT	1 cut(s)	1333
HpyCH4V	TGCA	8 cut(s)	664, 709, 781, 1126, 1183, 1309, 1363, 1508
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 265, 377, 547, 1577
HpyF3I	CTNAG	4 cut(s)	44, 315, 1200, 1278
HpySE526I	ACGT	1 cut(s)	1333
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	6 cut(s)	67, 655, 1049, 1235, 1367, 1522
HspAI	GCGC	3 cut(s)	794, 1580, 1729
KspAI	GTTAAC	1 cut(s)	192
KspI	CCGCGG	2 cut(s)	375, 575
Kzo9I	GATC	4 cut(s)	522, 595, 883, 1450
LmnI	GCTCC	4 cut(s)	801, 1177, 1216, 1387
Lsp1109I	GCAGC	2 cut(s)	1126, 1321
LweI	GCATC	6 cut(s)	768, 1078, 1192, 1296, 1543, 1716
MaeI	CTAG	1 cut(s)	1164
MaeII	ACGT	1 cut(s)	1333
MaeIII	GTNAC	7 cut(s)	481, 740, 946, 1048, 1195, 1415, 1654
MalI	GATC	4 cut(s)	524, 597, 885, 1452
MbiI	CCGCTC	2 cut(s)	259, 1282
MboI	GATC	4 cut(s)	522, 595, 883, 1450
MhlI	GDGCHC	5 cut(s)	467, 583, 762, 1128, 1563
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	6 cut(s)	426, 431, 494, 1476, 1609, 1705
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	5 cut(s)	161, 281, 291, 307, 425
MmeI	TCCRAC	1 cut(s)	480
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	191, 725, 1698
MslI	CAYNNNNRTG	2 cut(s)	557, 1029
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	374, 574
Mva1269I	GAATGC	3 cut(s)	270, 469, 1251
MvaI	CCWGG	3 cut(s)	382, 1303, 1385
MvnI	CGCG	3 cut(s)	374, 574, 1582
MwoI	GCNNNNNNNGC	5 cut(s)	49, 265, 377, 547, 1577
NdeI	CATATG	2 cut(s)	908, 1660
NdeII	GATC	4 cut(s)	522, 595, 883, 1450
NlaIII	CATG	6 cut(s)	67, 655, 1049, 1235, 1367, 1522
NlaIV	GGNNCC	6 cut(s)	223, 490, 509, 581, 693, 1212
NmeAIII	GCCGAG	3 cut(s)	19, 433, 723
NmuCI	GTSAC	4 cut(s)	946, 1048, 1415, 1654
NotI	GCGGCCGC	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	1730
NspI	RCATGY	2 cut(s)	1049, 1235
NspV	TTCGAA	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	1082
PagI	TCATGA	2 cut(s)	651, 1518
PceI	AGGCCT	1 cut(s)	380
PciI	ACATGT	1 cut(s)	1045
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 1579
PctI	GAATGC	3 cut(s)	270, 469, 1251
PfeI	GAWTC	4 cut(s)	125, 868, 896, 1675
PflMI	CCANNNNNTGG	2 cut(s)	912, 957
PfoI	TCCNGGA	1 cut(s)	1301
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	5 cut(s)	370, 373, 573, 1141, 1311
PleI	GAGTC	5 cut(s)	161, 280, 290, 307, 424
PmaCI	CACGTG	1 cut(s)	1334
PmlI	CACGTG	1 cut(s)	1334
PpsI	GAGTC	5 cut(s)	161, 280, 290, 307, 424
Ppu21I	YACGTR	1 cut(s)	1334
PpuMI	RGGWCCY	1 cut(s)	691
PscI	ACATGT	1 cut(s)	1045
PsiI	TTATAA	1 cut(s)	1747
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	3 cut(s)	380, 1301, 1383
PspCI	CACGTG	1 cut(s)	1334
PspEI	GGTNACC	2 cut(s)	481, 946
PspGI	CCWGG	3 cut(s)	380, 1301, 1383
PspN4I	GGNNCC	6 cut(s)	223, 490, 509, 581, 693, 1212
PspOMI	GGGCCC	1 cut(s)	579
PspPI	GGNCC	8 cut(s)	210, 221, 405, 453, 489, 579, 580, 691
PspPPI	RGGWCCY	1 cut(s)	691
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	1 cut(s)	1505
RsaI	GTAC	4 cut(s)	568, 965, 993, 1461
RsaNI	GTAC	4 cut(s)	567, 964, 992, 1460
RseI	CAYNNNNRTG	2 cut(s)	557, 1029
Rsr2I	CGGWCCG	1 cut(s)	453
RsrII	CGGWCCG	1 cut(s)	453
SacII	CCGCGG	2 cut(s)	375, 575
SaqAI	TTAA	3 cut(s)	191, 725, 1698
SatI	GCNGC	5 cut(s)	369, 372, 572, 1140, 1310
Sau3AI	GATC	4 cut(s)	522, 595, 883, 1450
Sau96I	GGNCC	8 cut(s)	210, 221, 405, 453, 489, 579, 580, 691
ScaI	AGTACT	1 cut(s)	1461
SchI	GAGTC	5 cut(s)	161, 281, 291, 307, 425
SduI	GDGCHC	5 cut(s)	467, 583, 762, 1128, 1563
SfaNI	GCATC	6 cut(s)	768, 1078, 1192, 1296, 1543, 1716
SfcI	CTRYAG	1 cut(s)	662
SfiI	GGCCNNNNNGGCC	1 cut(s)	377
Sfr274I	CTCGAG	1 cut(s)	1082
Sfr303I	CCGCGG	2 cut(s)	375, 575
SfuI	TTCGAA	1 cut(s)	102
SgrBI	CCGCGG	2 cut(s)	375, 575
SinI	GGWCC	3 cut(s)	453, 489, 691
SlaI	CTCGAG	1 cut(s)	1082
SmaI	CCCGGG	1 cut(s)	821
SmiMI	CAYNNNNRTG	2 cut(s)	557, 1029
SmlI	CTYRAG	4 cut(s)	1000, 1082, 1187, 1562
SmoI	CTYRAG	4 cut(s)	1000, 1082, 1187, 1562
Sse9I	AATT	6 cut(s)	426, 431, 494, 1476, 1609, 1705
SseBI	AGGCCT	1 cut(s)	380
SspI	AATATT	1 cut(s)	705
SspMI	CTAG	1 cut(s)	1164
StuI	AGGCCT	1 cut(s)	380
TaaI	ACNGT	7 cut(s)	75, 559, 838, 1101, 1179, 1501, 1742
TaiI	ACGT	1 cut(s)	1336
TaqI	TCGA	6 cut(s)	18, 102, 153, 232, 300, 1083
TasI	AATT	6 cut(s)	426, 431, 494, 1476, 1609, 1705
TatI	WGTACW	2 cut(s)	991, 1459
TauI	GCSGC	3 cut(s)	371, 374, 574
TfiI	GAWTC	4 cut(s)	125, 868, 896, 1675
Tru1I	TTAA	3 cut(s)	191, 725, 1698
Tru9I	TTAA	3 cut(s)	191, 725, 1698
TscAI	CASTG	4 cut(s)	78, 220, 1506, 1659
TseFI	GTSAC	4 cut(s)	946, 1048, 1415, 1654
TseI	GCWGC	2 cut(s)	1139, 1309
Tsp45I	GTSAC	4 cut(s)	946, 1048, 1415, 1654
TspDTI	ATGAA	7 cut(s)	17, 640, 843, 1234, 1409, 1535, 1682
TspGWI	ACGGA	3 cut(s)	209, 339, 1588
TspMI	CCCGGG	1 cut(s)	819
TspRI	CASTG	4 cut(s)	78, 220, 1506, 1659
Van91I	CCANNNNNTGG	2 cut(s)	912, 957
VneI	GTGCAC	1 cut(s)	1124
VpaK11BI	GGWCC	3 cut(s)	453, 489, 691
XapI	RAATTY	2 cut(s)	494, 1609
XceI	RCATGY	2 cut(s)	1049, 1235
XhoI	CTCGAG	1 cut(s)	1082
XmaI	CCCGGG	1 cut(s)	819
XmiI	GTMKAC	1 cut(s)	1042
XspI	CTAG	1 cut(s)	1164
ZrmI	AGTACT	1 cut(s)	1461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.