Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0018105

Physical Location & Seq

Genomic Coordinates Forward (+)

18538782 .. 18539623

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1203900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGCTAGTGAACGATACACTTCCAGCCAATACTACCGGAGATCATGCACCGGTGCCCTCCATCTGTGGTACAATGACCAGTTGTGCAAGGATATGGGATGGAACCCCAAAAGAAAGAAGGGACTCTTTGCTGAATTGTTTGAGCCTTATGGCCCCATGGATTATGCTTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

59

Amino Acids

6.85

Weight (kDa)

8.64

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018105)

Species	Orthologous Gene IDs
malus_domestica	MD16G1203900.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1
pyrus_communis	pycom10g11770
rosa_chinensis	RchiOBHm_Chr6g0280211
rosa_multiflora	Rmu_sc0000757.1_g000010 Rmu_sc0002826.1_g000028 Rmu_sc0002858.1_g000004 Rmu_sc0025333.1_g000001
rosa_samantha	Rh6AG242300 Rh6BG244700 Rh6CG246300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	50
AoxI	GGCC	1 cut(s)	151
AsiGI	ACCGGT	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	53
BccI	CCATC	2 cut(s)	69, 93
BfaI	CTAG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	3 cut(s)	55, 104, 154
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	2 cut(s)	36, 50
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	37, 51
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	1 cut(s)	153
BspLI	GGNNCC	3 cut(s)	55, 104, 154
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	70
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	2 cut(s)	45, 157
CviJI	RGCY	4 cut(s)	5, 27, 145, 153
CviKI_1	RGCY	4 cut(s)	5, 27, 145, 153
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	48, 160
FaiI	YATR	5 cut(s)	46, 95, 150, 158, 165
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	44, 156
FokI	GGATG	1 cut(s)	111
FspBI	CTAG	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	2 cut(s)	37, 51
Hin1II	CATG	2 cut(s)	48, 160
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	2 cut(s)	37, 51
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	48, 87
Hsp92II	CATG	2 cut(s)	48, 160
Kzo9I	GATC	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	37, 50, 64, 92
MaeI	CTAG	1 cut(s)	6
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	1 cut(s)	68
MspI	CCGG	2 cut(s)	37, 51
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	48, 160
NlaIV	GGNNCC	3 cut(s)	55, 104, 154
PinAI	ACCGGT	1 cut(s)	50
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PspN4I	GGNNCC	3 cut(s)	55, 104, 154
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	58
SgeI	CNNG	8 cut(s)	18, 36, 49, 57, 63, 91, 100, 169
SgrAI	CRCCGGYG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	134
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	156
TasI	AATT	1 cut(s)	134
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.