Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002826.1

Orthogroup ID

OG0018105

Physical Location & Seq

Genomic Coordinates Forward (+)

116176 .. 117833

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002826.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgaagacagatcaagatagcgtagcacacaacgataccgatgaaggtttgcaaaggtctccaaagaaaattgaggtgattcaagaaatagatgcagccaacgtgaacaacagaaagtgtcgtggtcggcctcgtaatatactggaaggagaatcccatgcatatgagaacttcacaaaagcaccaggagccaaggtgtcgccgttgatgaatatgcttatgttaaccagggaatgcatacatggacgaattccacaactagctgtaattggattctctgagagtatctcgaacttgtacacctctgagatgagatgcagatggctagcagagctccttgcaggcacgtttaaggtaccaagcataaaagagatggagaaagatgtgcagaaatgggacgaacacgcaaagcagttcgctggagagtactaccggagatcttgcattggagcccttcatctatggtacaatgaccaattgtgcaaggacatgggatggaaccacaaaaggaagaagggaatgtttgctgaactatttgagccctatggtccaatggattatgctatccctcaaattgggcaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

195

Amino Acids

22.47

Weight (kDa)

8.22

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018105)

Species	Orthologous Gene IDs
malus_domestica	MD16G1203900.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1
pyrus_communis	pycom10g11770
rosa_chinensis	RchiOBHm_Chr6g0280211
rosa_multiflora	Rmu_sc0000757.1_g000010 Rmu_sc0002826.1_g000028 Rmu_sc0002858.1_g000004 Rmu_sc0025333.1_g000001
rosa_samantha	Rh6AG242300 Rh6BG244700 Rh6CG246300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	4 cut(s)	299, 357, 428, 467
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	184, 227
AluBI	AGCT	2 cut(s)	263, 334
AluI	AGCT	2 cut(s)	263, 334
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	88
AsuNHI	GCTAGC	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	3 cut(s)	336, 454, 543
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	3 cut(s)	315, 367, 489
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	186, 229
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	260, 326
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	2 cut(s)	186, 229
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	4 cut(s)	190, 357, 451, 500
BmrFI	CCNGG	2 cut(s)	186, 229
BmsI	GCATC	2 cut(s)	82, 305
BmtI	GCTAGC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	192, 228
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	186, 229
BseDI	CCNNGG	2 cut(s)	192, 228
BseGI	GGATG	1 cut(s)	500
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	270, 297
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	336, 454, 543
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	10, 437
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	271, 298
BspLI	GGNNCC	4 cut(s)	190, 357, 451, 500
BspOI	GCTAGC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	192, 228
BssMI	GATC	2 cut(s)	10, 437
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	186, 229
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	327, 343
BstDEI	CTNAG	2 cut(s)	279, 306
BstF5I	GGATG	1 cut(s)	500
BstKTI	GATC	2 cut(s)	13, 440
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	10, 437
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 331
BstNI	CCWGG	2 cut(s)	186, 229
BstSCI	CCNGG	2 cut(s)	184, 227
BstV1I	GCAGC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	500
Cac8I	GCNNGC	2 cut(s)	327, 343
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	4 cut(s)	298, 356, 427, 466
CviAII	CATG	3 cut(s)	158, 242, 490
CviJI	RGCY	8 cut(s)	98, 130, 191, 263, 325, 334, 452, 541
CviKI_1	RGCY	8 cut(s)	98, 130, 191, 263, 325, 334, 452, 541
CviQI	GTAC	4 cut(s)	298, 356, 427, 466
DdeI	CTNAG	2 cut(s)	279, 306
DpnI	GATC	2 cut(s)	12, 439
DpnII	GATC	2 cut(s)	10, 437
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	3 cut(s)	336, 454, 543
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	184, 227
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	2 cut(s)	163, 239
EcoT38I	GRGCYC	3 cut(s)	336, 454, 543
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	161, 245, 493
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	157, 241, 489
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	507
FriOI	GRGCYC	3 cut(s)	336, 454, 543
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	260, 326
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	3 cut(s)	161, 245, 493
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	79, 152, 273
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	106, 225, 300
Hpy188I	TCNGA	2 cut(s)	280, 307
Hpy188III	TCNNGA	3 cut(s)	14, 83, 289
Hpy8I	GTNNAC	3 cut(s)	106, 225, 300
HpyAV	CCTTC	4 cut(s)	38, 140, 464, 508
HpyCH4IV	ACGT	2 cut(s)	102, 347
HpyCH4V	TGCA	9 cut(s)	52, 95, 161, 237, 318, 341, 388, 444, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 331
HpyF3I	CTNAG	2 cut(s)	279, 306
HpySE526I	ACGT	2 cut(s)	102, 347
Hsp92II	CATG	3 cut(s)	161, 245, 493
KpnI	GGTACC	1 cut(s)	359
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	10, 437
LmnI	GCTCC	3 cut(s)	188, 339, 449
LpnPI	CCDG	8 cut(s)	128, 171, 198, 214, 241, 327, 405, 446
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	2 cut(s)	82, 305
MaeI	CTAG	2 cut(s)	260, 326
MaeII	ACGT	2 cut(s)	102, 347
MalI	GATC	2 cut(s)	12, 439
MboI	GATC	2 cut(s)	10, 437
MboII	GAAGA	2 cut(s)	16, 523
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	3 cut(s)	336, 454, 543
MluCI	AATT	5 cut(s)	69, 249, 267, 476, 573
MnlI	CCTC	4 cut(s)	67, 141, 313, 579
Mph1103I	ATGCAT	2 cut(s)	163, 239
MseI	TTAA	2 cut(s)	224, 351
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	2 cut(s)	186, 229
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	186, 229
MwoI	GCNNNNNNNGC	2 cut(s)	188, 331
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	2 cut(s)	10, 437
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	161, 245, 493
NlaIV	GGNNCC	4 cut(s)	190, 357, 451, 500
NsiI	ATGCAT	2 cut(s)	163, 239
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	79, 152, 273
PkrI	GCNGC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	184, 227
PspGI	CCWGG	2 cut(s)	184, 227
PspN4I	GGNNCC	4 cut(s)	190, 357, 451, 500
PspPI	GGNCC	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	437
RsaI	GTAC	4 cut(s)	299, 357, 428, 467
RsaNI	GTAC	4 cut(s)	298, 356, 427, 466
RseI	CAYNNNNRTG	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	224, 351
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	10, 437
Sau96I	GGNCC	1 cut(s)	548
ScaI	AGTACT	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	186, 229
SduI	GDGCHC	3 cut(s)	336, 454, 543
SfaNI	GCATC	2 cut(s)	82, 305
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	5 cut(s)	69, 249, 267, 476, 573
SspMI	CTAG	2 cut(s)	260, 326
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	184, 227
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	2 cut(s)	105, 350
TaqI	TCGA	1 cut(s)	290
TasI	AATT	5 cut(s)	69, 249, 267, 476, 573
TatI	WGTACW	2 cut(s)	297, 426
TfiI	GAWTC	3 cut(s)	79, 152, 273
Tru1I	TTAA	2 cut(s)	224, 351
Tru9I	TTAA	2 cut(s)	224, 351
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	4 cut(s)	17, 57, 224, 446
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	249
XspI	CTAG	2 cut(s)	260, 326
ZrmI	AGTACT	1 cut(s)	428
Zsp2I	ATGCAT	2 cut(s)	163, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.