Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025333.1

Orthogroup ID

OG0018105

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025333.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

gacatctttgtgtcaccaacatttcaagactacatagctggatcacctaagtccattttacctctctacagggaatgcatccatgcacgaattccacaactagctgtaattggattctccgtgagtatttcaaccttgcacacatcagagatgaggtgcagatggctagcagagcttcttggaggcacattcaaggtaccaagcataaaagaaatggagaaagatgtgaaacagtgggatgagtatgccaagcgatactccggaaaatactatcggagatcatgcgtcggagcgcttcacatatggtacaatgaccaattgtgcaaggatatgggatggaatccgaaaaggaagaagggacttcttgctgaactatttgagccttatggcccaacggattatatttcctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

137

Amino Acids

15.85

Weight (kDa)

8.86

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018105)

Species	Orthologous Gene IDs
malus_domestica	MD16G1203900.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1
pyrus_communis	pycom10g11770
rosa_chinensis	RchiOBHm_Chr6g0280211
rosa_multiflora	Rmu_sc0000757.1_g000010 Rmu_sc0002826.1_g000028 Rmu_sc0002858.1_g000004 Rmu_sc0025333.1_g000001
rosa_samantha	Rh6AG242300 Rh6BG244700 Rh6CG246300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	260
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	2 cut(s)	198, 308
AfeI	AGCGCT	1 cut(s)	294
AgsI	TTSAA	3 cut(s)	26, 132, 193
AluBI	AGCT	3 cut(s)	38, 104, 175
AluI	AGCT	3 cut(s)	38, 104, 175
AlwI	GGATC	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	260
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	6, 36
AsuNHI	GCTAGC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	196
BccI	CCATC	2 cut(s)	156, 330
BfaI	CTAG	2 cut(s)	101, 167
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	1 cut(s)	87
BmtI	GCTAGC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	260
BseAI	TCCGGA	1 cut(s)	260
BseGI	GGATG	3 cut(s)	78, 244, 341
BsgI	GTGCAG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	390
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	41, 278
BspANI	GGCC	1 cut(s)	390
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	196
BssMI	GATC	2 cut(s)	41, 278
Bst4CI	ACNGT	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	78, 244, 341
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	44, 281
BstMBI	GATC	2 cut(s)	41, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	78, 244, 341
BtsIMutI	CAGTG	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	197, 307
CviAII	CATG	2 cut(s)	83, 282
CviJI	RGCY	6 cut(s)	38, 104, 166, 175, 382, 390
CviKI_1	RGCY	6 cut(s)	38, 104, 166, 175, 382, 390
CviQI	GTAC	2 cut(s)	197, 307
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	43, 280
DpnII	GATC	2 cut(s)	41, 278
Eco47III	AGCGCT	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	80
FaeI	CATG	2 cut(s)	86, 285
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	2 cut(s)	82, 281
FauNDI	CATATG	1 cut(s)	302
FokI	GGATG	3 cut(s)	65, 251, 348
FspBI	CTAG	2 cut(s)	101, 167
GlaI	GCGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	86, 285
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	114, 340
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	6, 36
Hpy188I	TCNGA	4 cut(s)	148, 276, 290, 345
Hpy188III	TCNNGA	2 cut(s)	26, 261
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	5 cut(s)	78, 86, 139, 159, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	86, 285
HspAI	GCGC	1 cut(s)	293
Kpn2I	TCCGGA	1 cut(s)	260
KpnI	GGTACC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	41, 278
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	3 cut(s)	24, 55, 274
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	101, 167
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	43, 280
MboI	GATC	2 cut(s)	41, 278
MboII	GAAGA	1 cut(s)	364
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	3 cut(s)	90, 108, 317
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	72, 147, 176
Mph1103I	ATGCAT	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	260
MseI	TTAA	1 cut(s)	412
MslI	CAYNNNNRTG	1 cut(s)	8
MspI	CCGG	1 cut(s)	261
MunI	CAATTG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeI	CATATG	1 cut(s)	302
NdeII	GATC	2 cut(s)	41, 278
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	86, 285
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	80
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	114, 340
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	389
RsaI	GTAC	2 cut(s)	198, 308
RsaNI	GTAC	2 cut(s)	197, 307
RseI	CAYNNNNRTG	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	412
Sau3AI	GATC	2 cut(s)	41, 278
Sau96I	GGNCC	1 cut(s)	389
SetI	ASST	8 cut(s)	40, 49, 64, 106, 137, 158, 177, 198
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	8
Sse9I	AATT	3 cut(s)	90, 108, 317
SspMI	CTAG	2 cut(s)	101, 167
TaaI	ACNGT	1 cut(s)	234
TasI	AATT	3 cut(s)	90, 108, 317
TfiI	GAWTC	2 cut(s)	114, 340
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	12
TspGWI	ACGGA	2 cut(s)	109, 410
TspRI	CASTG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	90
XspI	CTAG	2 cut(s)	101, 167
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.