Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018105

Physical Location & Seq

Genomic Coordinates Reverse (-)

45513937 .. 45515222

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG244700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATATGCTTATGTTAACCAGGGAATGCATACATGGACGAATTCCACAACTAGCTGTAATTGGATTCTCTGAGAGTATCTCGAACTTGTACACCTCTGAGATGAGATGCAGATGGCTAGCAGAGCTCCTTGCAGGCACGTTTAAGGTACCAAGCATAAAAGAGATGGAGAAAGATGTGAAGAAATGGGACGAATACGCAAAGCAGTACGCTGGAGAGTACTACCGAAGATCTTGCATTGGAGCCCTTCATCTATGGTACAATGACCAATGTTTCATTGCCTCATTGTCCAGCGTTTCGCTGAACAAGTGGCACAGGGTGGCGTCATCGAATCCTTTGTTGTTGGTAACCTTTTTGAAGGTGTCCATATGGACGAAGGGATCAGTCTTACCGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

132

Amino Acids

15.22

Weight (kDa)

9.12

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018105)

Species	Orthologous Gene IDs
malus_domestica	MD16G1203900.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1
pyrus_communis	pycom10g11770
rosa_chinensis	RchiOBHm_Chr6g0280211
rosa_multiflora	Rmu_sc0000757.1_g000010 Rmu_sc0002826.1_g000028 Rmu_sc0002858.1_g000004 Rmu_sc0025333.1_g000001
rosa_samantha	Rh6AG242300 Rh6BG244700 Rh6CG246300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	5 cut(s)	92, 150, 209, 221, 260
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	2 cut(s)	56, 127
AluI	AGCT	2 cut(s)	56, 127
Alw21I	GWGCWC	1 cut(s)	129
AlwI	GGATC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	148
AsuNHI	GCTAGC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	129, 247
Bbv12I	GWGCWC	1 cut(s)	129
BccI	CCATC	2 cut(s)	108, 160
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	1 cut(s)	22
BfaI	CTAG	2 cut(s)	53, 119
BglII	AGATCT	1 cut(s)	230
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	22
BmiI	GGNNCC	2 cut(s)	150, 244
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	98
BmtI	GCTAGC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	63, 90
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	129, 247
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	230, 380
BspACI	CCGC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	64, 91
BspLI	GGNNCC	2 cut(s)	150, 244
BspOI	GCTAGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	230, 380
BssNI	GRCGYC	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	120, 136
BstDEI	CTNAG	2 cut(s)	72, 99
BstEII	GGTNACC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	233, 383
BstMBI	GATC	2 cut(s)	230, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	1 cut(s)	22
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Cac8I	GCNNGC	2 cut(s)	120, 136
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	5 cut(s)	91, 149, 208, 220, 259
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	4 cut(s)	56, 118, 127, 245
CviKI_1	RGCY	4 cut(s)	56, 118, 127, 245
CviQI	GTAC	5 cut(s)	91, 149, 208, 220, 259
DdeI	CTNAG	2 cut(s)	72, 99
DpnI	GATC	2 cut(s)	232, 382
DpnII	GATC	2 cut(s)	230, 380
DraIII	CACNNNGTG	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	2 cut(s)	129, 247
Eco53kI	GAGCTC	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	20
EcoT22I	ATGCAT	1 cut(s)	32
EcoT38I	GRGCYC	2 cut(s)	129, 247
FaeI	CATG	1 cut(s)	38
FaiI	YATR	8 cut(s)	8, 14, 32, 36, 158, 256, 368, 370
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	368
FriOI	GRGCYC	2 cut(s)	129, 247
FspBI	CTAG	2 cut(s)	53, 119
GsuI	CTGGAG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	312
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	66, 331
HpaI	GTTAAC	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	18, 93
Hpy188I	TCNGA	2 cut(s)	73, 100
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	18, 93
HpyAV	CCTTC	3 cut(s)	257, 352, 370
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	30, 111, 134, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	72, 99
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	230, 380
LmnI	GCTCC	2 cut(s)	132, 242
LpnPI	CCDG	6 cut(s)	7, 34, 120, 198, 301, 304
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	53, 119
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	232, 382
MboI	GATC	2 cut(s)	230, 380
MboII	GAAGA	2 cut(s)	193, 240
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	129, 247
MluCI	AATT	2 cut(s)	42, 60
MnlI	CCTC	2 cut(s)	106, 292
Mph1103I	ATGCAT	1 cut(s)	32
MseI	TTAA	2 cut(s)	17, 144
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	2 cut(s)	230, 380
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	150, 244
NsiI	ATGCAT	1 cut(s)	32
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	66, 331
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	150, 244
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	5 cut(s)	92, 150, 209, 221, 260
RsaNI	GTAC	5 cut(s)	91, 149, 208, 220, 259
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	17, 144
Sau3AI	GATC	2 cut(s)	230, 380
ScaI	AGTACT	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	129, 247
SetI	ASST	7 cut(s)	58, 98, 129, 143, 150, 353, 363
SfaNI	GCATC	1 cut(s)	98
Sse9I	AATT	2 cut(s)	42, 60
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	2 cut(s)	53, 119
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	20
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	2 cut(s)	83, 329
TasI	AATT	2 cut(s)	42, 60
TatI	WGTACW	2 cut(s)	90, 219
TfiI	GAWTC	2 cut(s)	66, 331
Tru1I	TTAA	2 cut(s)	17, 144
Tru9I	TTAA	2 cut(s)	17, 144
TspDTI	ATGAA	3 cut(s)	17, 239, 265
XapI	RAATTY	1 cut(s)	42
XspI	CTAG	2 cut(s)	53, 119
ZrmI	AGTACT	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.