Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000757.1

Orthogroup ID

OG0018105

Physical Location & Seq

Genomic Coordinates Reverse (-)

37246 .. 37509

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000757.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgaggtgcaaatggctagcagagcttcttggaggcacattcaaggtaccaagcataaaagaaatggagaaagatgtgaaacaatgggatgagtatgccaagcgatactccagaaaatactatcggagatcatgcatcggagtgcttcacatatggtacaatgaccaattgtgcaaggatatgggatggaatcccaaaaggaagaagggacttcttgctgaactatttgagccttatggcccaacggattatatttcctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004497 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009626 GO:0009627 GO:0009628 GO:0009814 GO:0009870 GO:0009987 GO:0010204 GO:0012501 GO:0016491 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0042742 GO:0043207 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00982 ko01120 map00982 map01120

Pfam Domains

Protein Families

FMO-like

Protein Analysis

87

Amino Acids

10.46

Weight (kDa)

9.3

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018105)

Species	Orthologous Gene IDs
malus_domestica	MD16G1203900.v1.1
prunus_persica	Prupe.8G177000_v2.0.a1
pyrus_communis	pycom10g11770
rosa_chinensis	RchiOBHm_Chr6g0280211
rosa_multiflora	Rmu_sc0000757.1_g000010 Rmu_sc0002826.1_g000028 Rmu_sc0002858.1_g000004 Rmu_sc0025333.1_g000001
rosa_samantha	Rh6AG242300 Rh6BG244700 Rh6CG246300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AfaI	GTAC	2 cut(s)	48, 158
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AoxI	GGCC	1 cut(s)	238
Asp718I	GGTACC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	239
AsuNHI	GCTAGC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	46
BccI	CCATC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	94, 191
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	46
BssMI	GATC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	94, 191
BstKTI	GATC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	94, 191
Cac8I	GCNNGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	47, 157
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	4 cut(s)	16, 25, 232, 240
CviKI_1	RGCY	4 cut(s)	16, 25, 232, 240
CviQI	GTAC	2 cut(s)	47, 157
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	137
FaeI	CATG	1 cut(s)	135
FaiI	YATR	8 cut(s)	56, 96, 133, 152, 154, 182, 237, 252
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	131
FauNDI	CATATG	1 cut(s)	152
FokI	GGATG	2 cut(s)	101, 198
FspBI	CTAG	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	135
HinfI	GANTC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	126, 140
Hpy188III	TCNNGA	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	9, 135, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	128
LpnPI	CCDG	1 cut(s)	124
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	17
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	167
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	137
MseI	TTAA	1 cut(s)	262
MslI	CAYNNNNRTG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeI	CATATG	1 cut(s)	152
NdeII	GATC	1 cut(s)	128
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	239
RsaI	GTAC	2 cut(s)	48, 158
RsaNI	GTAC	2 cut(s)	47, 157
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	239
SetI	ASST	3 cut(s)	8, 27, 48
SfaNI	GCATC	1 cut(s)	144
SgeI	CNNG	9 cut(s)	29, 41, 55, 63, 112, 123, 144, 187, 227
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	17
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	260
XspI	CTAG	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.