Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006550

Physical Location & Seq

Genomic Coordinates Reverse (-)

27877122 .. 27882099

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1249600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2475 bp

ATGTCGCCAGCTCCAATTGAGCAGGCATTGCCCGATTCGTCGTCTTCGAGCTCCCCTGATGTTCCTGAGATATCTGAGGCTGAGAATCCTCGATTCAAGGAGCTTAGAGGCGTCCAATGGCGTATTAATCTTGGGATTTTGCCCTCTTCTTCTTCTTCGTCTTCTTCGTCCTCCATTGATGATCTTCGTCGGGTCACAGCTGAATGTAGAAGAGGATATGCTGGATTGAGAAGGCGCCTTCTGGTTGATCCACATCCCCAAAACGATAGTAATTCCCCTGATCTTTCCGTAGACAATCCGCTGTCACAAAACCCAGATAGCACATGGGGTCGCTTTTTCCGGAGTGCCGAGCTGGAGAAAATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGAAGCTACTTTCAAACACCAGGATGCCAAGGCATGTTGAGAAGAATCTTGTTATTGTGGTGTCTTAGATATCCAGAGTGTGGTTATAGACAAGGAATGCATGAACTCTTGGCTCCTTTATTGTATGTTCTTCATTTTGATGTGGAGCGGCTATCTCAAGTGCGAAAGCTATATGAAGATCACCTCACTGATAAATTTGATGGTCTATCATTTCATGAAAGTGATCTTACATACAACTTTGAGTTCAAAAAGTTTCCTGACTCCACAGAAGATGAGAATGGCTTAGATGGAACTGCATTGAATGTTAAGAGTCTTGATGAGCTTGATCCCGAGATACAGACAATTGTGATGCTTAGTGATGCTTATGGTGCTGAAGGTGAACTGGGTATTGTTTTCTCTGAGAGATTTATGGAACATGATGCGTACTGTATGTTTGATGCTCTAATGAGGGGGGCCCATGGTTCAGTTTCTATGGCAGAATTCTTCTATCCCTCCCCTGCTGTTGGTTCTCATACTAATTTACCTCCTGTCATTGAAGCATCTGCTGCGTTGTATCATTTGCTGTCCCTTGTTGATTCGTCTTTACACAGCCACCTTGTTGAGCTTGGTGTTGAACCCCAGTATTTTGCACTCCGCTGGTTAAGGGTTTTATTTGGACGTGAATTTTCACTTGCAAATCTATTGATAATTTGGGATGAAATATTTGCATCTGATAATAGTAAATTATACAAAGGTTCTGAAGATGATGCAGCATCCAGCTTTGCCATCCTTACTTCACCTCGAGGAGCATATATATCAGCCATGGCAGTTTCAATGTTACTTTATTTGAGATCTTCCCTACTTGCCACTGAGAATGCTACTGCATGTCTTCAGAGATTGTTAAATTTTCCTGAGAATATAGATTTGAAGAAACTGATACAAAAGGCAAAGTCTTTGCAGGATCTTGCTTTGAAGAACAATAGCTCACCCTCATTACTTTCATATTTTGGGCCCTATGAACATAGTAAATCAATGACTGTAAGAGGTCATAGCCTTTCAGTCGATTCCGTATCTCCAAAAGCACCAATAAATCTAGTACCTGAAAGCTACTGGGAAGAGAAGTGGAGAGTTCTGCACAGGGAAGAAGAAATAAGGCAAGATGATTTGAAAAAACAGGTTCCAAGCCAGAAAAAGCGATGGACAGAAAAAGTAAAGTTGAGCCTATCCAGAACAGAATCTGACCCATCTCCATCAAAATCAGAGCATGGCAAAAGGAACCCCAGGTTTTCTGTTAGACGAAGGTTGCTGCAAGACCTTTCTCGAGAACTCAGCTCAGAAGAAGATATTGAGACATTGGGTTCTCATGAAAACAAACTCTCTTCAGAAGTAGAGGTCAACAGAGAAGATGGTTTCAGTAAGGACCTTAATTCTGCCACTGAGAAAAGATGTTTGAATGAAGATCCAGCCAGCGAAGAAAATTCATCTGTTTTGTCAGATCCAACTAGTCCTCGTACTGGAGCTAATGGTCATGAACTTGAGTCAGAAAAAAGTAGCGTTGCATCAAATTTGTCTATTAACGAAAATGATGATAATTCGCAGGGTGTGTCAGAGGAGCCACCTCTTCTGGTTTCTGATCATCCAAAGGGTGTCTCTCATTCTCCCGGAAATTCAGTGCCAGGAAAGGAACGGAAACTTCTTTCTGGTAAATTCCAGAAACTTTGGAAGTTTGGATGGAATGCAGCTGGTGAAGGGACATCCGAGAAAGGACACAATGCCATTGAGGCTACGAAGTCTTCCAATTGTGAAGGTAATCAGAACACAACAAGCTCTTCTGTAGCTGAGGGGTCCTGCAGTTCTTTAGTTAGCCACAATGGAGAAGCTGTTGACCAGCATGTGACGGGTACTTTAAGGAATCTTGGGCAGTCTATGATTGAAAATATTCAGGTTATTGAGTCTGTTTTCCAGCAAGATCGGGGTGTTCAGGTTGGGTCGTTGGAGAACTTATCAAAAAACACTTTAGTTGGCAAAGGACAAGTTACGGCCATGGCAGCTCTAACAGAGCTTCGGAAGATCAGCAACCTTTTGTCAGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

825

Amino Acids

91.61

Weight (kDa)

5.25

Isoelectric Point (pI)

58.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	119 - 177	2.8e-12	Rab-GTPase-TBC domain
RabGAP-TBC	PF00566	271 - 373	4e-11	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29950 AT4G29950 AT4G29950 AT5G57210 AT5G57210
fragaria_vesca	FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350
malus_domestica	MD13G1242400.v1.1 MD16G1249600.v1.1
prunus_persica	Prupe.1G076400_v2.0.a1 Prupe.1G076400_v2.0.a1
pyrus_communis	pycom16g20900
rosa_chinensis	RchiOBHm_Chr4g0399721
rosa_laevigata	RLG00000009244
rosa_multiflora	Rmu_ssc0000118.1_g000009
rosa_roxburghii	Rroxscaffold_5G00344660
rosa_rugosa	Rorug04G0018500
rosa_samantha	Rh4AG096100 Rh4BG093600 Rh4CG104900 Rh4DG088900
rosa_wichuraiana	Rw4G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1179
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	2 cut(s)	398, 479
AccBSI	CCGCTC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	3 cut(s)	299, 547, 1033
AclWI	GGATC	5 cut(s)	242, 719, 1347, 1832, 1868
AcoI	YGGCCR	1 cut(s)	2418
AcsI	RAATTY	8 cut(s)	593, 878, 1061, 1282, 1855, 1942, 2044, 2084
AcuI	CTGAAG	4 cut(s)	792, 1158, 1253, 1743
AcyI	GRCGYC	2 cut(s)	111, 235
AfaI	GTAC	4 cut(s)	824, 1476, 1891, 2281
AfiI	CCNNNNNNNGG	4 cut(s)	398, 479, 902, 1892
AhlI	ACTAGT	1 cut(s)	1880
AjiI	CACGTC	1 cut(s)	1058
AjnI	CCWGG	3 cut(s)	418, 1658, 2053
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	1721, 2032
AlwI	GGATC	5 cut(s)	242, 719, 1347, 1832, 1868
AlwNI	CAGNNNCTG	1 cut(s)	1616
Ama87I	CYCGRG	3 cut(s)	728, 1179, 1698
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	3 cut(s)	852, 1388, 2418
ApaI	GGGCCC	2 cut(s)	856, 1392
ApeKI	GCWGC	5 cut(s)	944, 1148, 1684, 2117, 2426
ApoI	RAATTY	8 cut(s)	593, 878, 1061, 1282, 1855, 1942, 2044, 2084
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	2316
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	6 cut(s)	852, 853, 1388, 1389, 1798, 2223
AsuC2I	CCSGG	1 cut(s)	2040
AsuHPI	GGTGA	5 cut(s)	572, 788, 1167, 1356, 2135
AvaI	CYCGRG	3 cut(s)	728, 1179, 1698
AvaII	GGWCC	2 cut(s)	1798, 2223
BaeGI	GKGCMC	2 cut(s)	856, 1392
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	3 cut(s)	53, 856, 1392
BbsI	GAAGAC	4 cut(s)	36, 153, 1259, 2163
Bbv12I	GWGCWC	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	2217
BbvI	GCAGC	5 cut(s)	931, 1160, 1671, 2129, 2438
BccI	CCATC	8 cut(s)	593, 680, 1172, 1569, 1630, 1636, 1778, 2103
BceAI	ACGGC	1 cut(s)	2433
BciT130I	CCWGG	3 cut(s)	420, 1660, 2055
BclI	TGATCA	2 cut(s)	367, 2011
BcnI	CCSGG	1 cut(s)	2040
BcoDI	GTCTC	2 cut(s)	1721, 2032
BcuI	ACTAGT	1 cut(s)	1880
BfaI	CTAG	2 cut(s)	1472, 1881
BfmI	CTRYAG	2 cut(s)	2211, 2227
BfoI	RGCGCY	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	2159
BglII	AGATCT	1 cut(s)	1229
BisI	GCNGC	6 cut(s)	548, 945, 1149, 1685, 2118, 2427
BlsI	GCNGC	6 cut(s)	549, 946, 1150, 1686, 2119, 2428
Bme1390I	CCNGG	4 cut(s)	420, 1660, 2040, 2055
Bme18I	GGWCC	2 cut(s)	1798, 2223
BmeT110I	CYCGRG	3 cut(s)	728, 1179, 1698
BmgBI	CACGTC	1 cut(s)	1058
BmgT120I	GGNCC	6 cut(s)	852, 853, 1388, 1389, 1798, 2223
BmiI	GGNNCC	9 cut(s)	236, 513, 853, 854, 1390, 1557, 1655, 1992, 2224
BmrFI	CCNGG	4 cut(s)	420, 1660, 2040, 2055
BmrI	ACTGGG	3 cut(s)	791, 1012, 1498
BmuI	ACTGGG	3 cut(s)	791, 1012, 1498
BpiI	GAAGAC	4 cut(s)	36, 153, 1259, 2163
BpmI	CTGGAG	2 cut(s)	374, 1914
Bpu10I	CCTNAGC	1 cut(s)	2217
BpuEI	CTTGAG	2 cut(s)	540, 1934
BpuMI	CCSGG	1 cut(s)	2040
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	111, 235
BsaJI	CCNNGG	5 cut(s)	427, 856, 1200, 1658, 2421
BsaWI	WCCGGW	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	2244, 2274
Bsc4I	CCNNNNNNNGG	4 cut(s)	398, 479, 902, 1892
Bse1I	ACTGG	4 cut(s)	786, 1018, 1493, 1897
Bse3DI	GCAATG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	3 cut(s)	420, 1660, 2055
BseDI	CCNNGG	5 cut(s)	427, 856, 1200, 1658, 2421
BseGI	GGATG	8 cut(s)	253, 428, 1099, 1151, 1164, 2014, 2114, 2132
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	4 cut(s)	398, 479, 902, 1892
BseMI	GCAATG	1 cut(s)	26
BseNI	ACTGG	4 cut(s)	786, 1018, 1493, 1897
BseRI	GAGGAG	2 cut(s)	1197, 2003
BseSI	GKGCMC	2 cut(s)	856, 1392
BseXI	GCAGC	5 cut(s)	931, 1160, 1671, 2129, 2438
BsgI	GTGCAG	1 cut(s)	1496
BshFI	GGCC	3 cut(s)	854, 1390, 2420
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	3 cut(s)	728, 1179, 1698
BsiSI	CCGG	2 cut(s)	340, 2040
BslFI	GGGAC	2 cut(s)	949, 2143
BslI	CCNNNNNNNGG	4 cut(s)	398, 479, 902, 1892
BsmAI	GTCTC	2 cut(s)	1721, 2032
BsmFI	GGGAC	2 cut(s)	949, 2143
BsmI	GAATGC	3 cut(s)	501, 1258, 2119
BsnI	GGCC	3 cut(s)	854, 1390, 2420
BsoBI	CYCGRG	3 cut(s)	728, 1179, 1698
Bsp120I	GGGCCC	2 cut(s)	852, 1388
Bsp1286I	GDGCHC	3 cut(s)	53, 856, 1392
Bsp13I	TCCGGA	1 cut(s)	339
Bsp19I	CCATGG	3 cut(s)	856, 1200, 2421
BspACI	CCGC	3 cut(s)	299, 547, 1033
BspANI	GGCC	3 cut(s)	854, 1390, 2420
BspEI	TCCGGA	1 cut(s)	339
BspHI	TCATGA	3 cut(s)	613, 1741, 1906
BspLI	GGNNCC	9 cut(s)	236, 513, 853, 854, 1390, 1557, 1655, 1992, 2224
BspMAI	CTGCAG	1 cut(s)	2231
BspPI	GGATC	5 cut(s)	242, 719, 1347, 1832, 1868
BspQI	GCTCTTC	1 cut(s)	2212
BspT107I	GGYRCC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	4 cut(s)	786, 1018, 1493, 1897
BssECI	CCNNGG	5 cut(s)	427, 856, 1200, 1658, 2421
BssNI	GRCGYC	2 cut(s)	111, 235
BssT1I	CCWWGG	4 cut(s)	427, 856, 1200, 2421
Bst2UI	CCWGG	3 cut(s)	420, 1660, 2055
Bst4CI	ACNGT	2 cut(s)	827, 1417
Bst6I	CTCTTC	6 cut(s)	151, 205, 1488, 1762, 2004, 2212
BstACI	GRCGYC	2 cut(s)	111, 235
BstAPI	GCANNNNNTGC	2 cut(s)	28, 944
BstC8I	GCNNGC	3 cut(s)	9, 24, 1846
BstDSI	CCRYGG	3 cut(s)	856, 1200, 2421
BstF5I	GGATG	8 cut(s)	253, 428, 1099, 1151, 1164, 2014, 2114, 2132
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstMAI	GTCTC	2 cut(s)	1721, 2032
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 767, 944, 2159, 2426
BstNI	CCWGG	3 cut(s)	420, 1660, 2055
BstNSI	RCATGY	3 cut(s)	436, 1266, 2273
BstSCI	CCNGG	4 cut(s)	418, 1658, 2038, 2053
BstSFI	CTRYAG	2 cut(s)	2211, 2227
BstSLI	GKGCMC	2 cut(s)	856, 1392
BstV1I	GCAGC	5 cut(s)	931, 1160, 1671, 2129, 2438
BstV2I	GAAGAC	4 cut(s)	36, 153, 1259, 2163
BstX2I	RGATCY	4 cut(s)	1229, 1339, 1837, 1873
BstYI	RGATCY	4 cut(s)	1229, 1339, 1837, 1873
BsuRI	GGCC	3 cut(s)	854, 1390, 2420
BtgI	CCRYGG	3 cut(s)	856, 1200, 2421
BtgZI	GCGATG	1 cut(s)	1588
BtrI	CACGTC	1 cut(s)	1058
BtsCI	GGATG	8 cut(s)	253, 428, 1099, 1151, 1164, 2014, 2114, 2132
BtsIMutI	CAGTG	4 cut(s)	585, 1245, 1812, 2055
Cac8I	GCNNGC	3 cut(s)	9, 24, 1846
CaiI	CAGNNNCTG	1 cut(s)	1616
CciI	TCATGA	3 cut(s)	613, 1741, 1906
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	6 cut(s)	852, 853, 1388, 1389, 1798, 2223
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	823, 1475, 1890, 2280
CviQI	GTAC	4 cut(s)	823, 1475, 1890, 2280
DinI	GGCGCC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	2418
Eam1104I	CTCTTC	6 cut(s)	151, 205, 1488, 1762, 2004, 2212
EarI	CTCTTC	6 cut(s)	151, 205, 1488, 1762, 2004, 2212
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	4 cut(s)	427, 856, 1200, 2421
Eco24I	GRGCYC	3 cut(s)	53, 856, 1392
Eco32I	GATATC	2 cut(s)	72, 470
Eco47I	GGWCC	2 cut(s)	1798, 2223
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	4 cut(s)	792, 1158, 1253, 1743
Eco88I	CYCGRG	3 cut(s)	728, 1179, 1698
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	4 cut(s)	852, 1389, 1798, 2223
EcoRI	GAATTC	1 cut(s)	878
EcoRII	CCWGG	3 cut(s)	418, 1658, 2053
EcoRV	GATATC	2 cut(s)	72, 470
EcoT14I	CCWWGG	4 cut(s)	427, 856, 1200, 2421
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	3 cut(s)	53, 856, 1392
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
ErhI	CCWWGG	4 cut(s)	427, 856, 1200, 2421
FaqI	GGGAC	2 cut(s)	949, 2143
FbaI	TGATCA	2 cut(s)	367, 2011
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	548, 945, 1149, 1685, 2118, 2427
FokI	GGATG	8 cut(s)	240, 435, 1106, 1138, 1151, 2001, 2119, 2121
FriOI	GRGCYC	3 cut(s)	53, 856, 1392
Fsp4HI	GCNGC	6 cut(s)	548, 945, 1149, 1685, 2118, 2427
FspBI	CTAG	2 cut(s)	1472, 1881
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	6 cut(s)	548, 945, 1149, 1685, 2118, 2427
GsuI	CTGGAG	2 cut(s)	374, 1914
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	3 cut(s)	854, 1390, 2420
HapII	CCGG	2 cut(s)	340, 2040
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	2 cut(s)	111, 235
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	2 cut(s)	1774, 2263
HindII	GTYRAC	2 cut(s)	1774, 2263
HpaII	CCGG	2 cut(s)	340, 2040
HphI	GGTGA	5 cut(s)	572, 788, 1167, 1356, 2135
Hpy166II	GTNNAC	4 cut(s)	292, 779, 1774, 2263
Hpy8I	GTNNAC	4 cut(s)	292, 779, 1774, 2263
Hpy99I	CGWCG	2 cut(s)	43, 192
HpyAV	CCTTC	6 cut(s)	225, 248, 767, 1671, 2120, 2177
HpyCH4III	ACNGT	2 cut(s)	827, 1417
HpyCH4IV	ACGT	2 cut(s)	382, 1057
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 767, 944, 2159, 2426
HpySE526I	ACGT	2 cut(s)	382, 1057
Hsp92I	GRCGYC	2 cut(s)	111, 235
HspAI	GCGC	1 cut(s)	235
KasI	GGCGCC	1 cut(s)	234
Kpn2I	TCCGGA	1 cut(s)	339
Ksp22I	TGATCA	2 cut(s)	367, 2011
LguI	GCTCTTC	1 cut(s)	2212
LmnI	GCTCC	8 cut(s)	16, 56, 100, 517, 544, 1184, 1895, 1990
Lsp1109I	GCAGC	5 cut(s)	931, 1160, 1671, 2129, 2438
MaeI	CTAG	2 cut(s)	1472, 1881
MaeII	ACGT	2 cut(s)	382, 1057
MaeIII	GTNAC	5 cut(s)	193, 303, 1215, 2272, 2413
MbiI	CCGCTC	1 cut(s)	547
MfeI	CAATTG	3 cut(s)	15, 741, 2176
MflI	RGATCY	4 cut(s)	1229, 1339, 1837, 1873
MhlI	GDGCHC	3 cut(s)	53, 856, 1392
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	4 cut(s)	653, 718, 1925, 2339
MmeI	TCCRAC	2 cut(s)	1901, 2352
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	2316
MseI	TTAA	7 cut(s)	126, 705, 1040, 1280, 1803, 1953, 2285
MslI	CAYNNNNRTG	3 cut(s)	421, 537, 618
MspA1I	CMGCKG	4 cut(s)	200, 301, 1035, 2120
MspI	CCGG	2 cut(s)	340, 2040
MspR9I	CCNGG	4 cut(s)	420, 1660, 2040, 2055
MunI	CAATTG	3 cut(s)	15, 741, 2176
Mva1269I	GAATGC	3 cut(s)	501, 1258, 2119
MvaI	CCWGG	3 cut(s)	420, 1660, 2055
MwoI	GCNNNNNNNGC	5 cut(s)	28, 767, 944, 2159, 2426
NarI	GGCGCC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	2040
NcoI	CCATGG	3 cut(s)	856, 1200, 2421
NlaIV	GGNNCC	9 cut(s)	236, 513, 853, 854, 1390, 1557, 1655, 1992, 2224
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	3 cut(s)	193, 303, 2272
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	3 cut(s)	436, 1266, 2273
PaeR7I	CTCGAG	2 cut(s)	1179, 1698
PagI	TCATGA	3 cut(s)	613, 1741, 1906
PciSI	GCTCTTC	1 cut(s)	2212
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 164
PctI	GAATGC	3 cut(s)	501, 1258, 2119
PdmI	GAANNNNTTC	1 cut(s)	2316
PfeI	GAWTC	8 cut(s)	35, 85, 93, 444, 974, 1442, 1613, 2290
PflMI	CCANNNNNTGG	2 cut(s)	398, 479
PfoI	TCCNGGA	1 cut(s)	2038
PkrI	GCNGC	6 cut(s)	549, 946, 1150, 1686, 2119, 2428
PleI	GAGTC	4 cut(s)	653, 717, 1924, 2338
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	4 cut(s)	653, 717, 1924, 2338
PpuMI	RGGWCCY	2 cut(s)	1798, 2223
PshBI	ATTAAT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	53
Psp5II	RGGWCCY	2 cut(s)	1798, 2223
Psp6I	CCWGG	3 cut(s)	418, 1658, 2053
PspGI	CCWGG	3 cut(s)	418, 1658, 2053
PspN4I	GGNNCC	9 cut(s)	236, 513, 853, 854, 1390, 1557, 1655, 1992, 2224
PspOMI	GGGCCC	2 cut(s)	852, 1388
PspPI	GGNCC	6 cut(s)	852, 853, 1388, 1389, 1798, 2223
PspPPI	RGGWCCY	2 cut(s)	1798, 2223
PspXI	VCTCGAGB	1 cut(s)	1179
PstI	CTGCAG	1 cut(s)	2231
PstNI	CAGNNNCTG	1 cut(s)	1616
PsuI	RGATCY	4 cut(s)	1229, 1339, 1837, 1873
PvuII	CAGCTG	2 cut(s)	200, 2120
RsaI	GTAC	4 cut(s)	824, 1476, 1891, 2281
RsaNI	GTAC	4 cut(s)	823, 1475, 1890, 2280
RseI	CAYNNNNRTG	3 cut(s)	421, 537, 618
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	2212
SaqAI	TTAA	7 cut(s)	126, 705, 1040, 1280, 1803, 1953, 2285
SatI	GCNGC	6 cut(s)	548, 945, 1149, 1685, 2118, 2427
Sau96I	GGNCC	6 cut(s)	852, 853, 1388, 1389, 1798, 2223
SchI	GAGTC	4 cut(s)	653, 718, 1925, 2339
ScrFI	CCNGG	4 cut(s)	420, 1660, 2040, 2055
SduI	GDGCHC	3 cut(s)	53, 856, 1392
SfcI	CTRYAG	2 cut(s)	2211, 2227
SfoI	GGCGCC	1 cut(s)	236
Sfr274I	CTCGAG	2 cut(s)	1179, 1698
SinI	GGWCC	2 cut(s)	1798, 2223
SlaI	CTCGAG	2 cut(s)	1179, 1698
SmiMI	CAYNNNNRTG	3 cut(s)	421, 537, 618
SmlI	CTYRAG	4 cut(s)	555, 1179, 1698, 1913
SmoI	CTYRAG	4 cut(s)	555, 1179, 1698, 1913
SpeI	ACTAGT	1 cut(s)	1880
SsiI	CCGC	3 cut(s)	299, 547, 1033
SspDI	GGCGCC	1 cut(s)	234
SspI	AATATT	2 cut(s)	1101, 2317
SspMI	CTAG	2 cut(s)	1472, 1881
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	418, 1658, 2038, 2053
StyI	CCWWGG	4 cut(s)	427, 856, 1200, 2421
TaaI	ACNGT	2 cut(s)	827, 1417
TaiI	ACGT	2 cut(s)	385, 1060
TaqI	TCGA	5 cut(s)	47, 91, 1180, 1440, 1699
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	8 cut(s)	35, 85, 93, 444, 974, 1442, 1613, 2290
Tru1I	TTAA	7 cut(s)	126, 705, 1040, 1280, 1803, 1953, 2285
Tru9I	TTAA	7 cut(s)	126, 705, 1040, 1280, 1803, 1953, 2285
TscAI	CASTG	4 cut(s)	592, 1252, 1819, 2055
TseFI	GTSAC	3 cut(s)	193, 303, 2272
TseI	GCWGC	5 cut(s)	944, 1148, 1684, 2117, 2426
Tsp45I	GTSAC	3 cut(s)	193, 303, 2272
TspGWI	ACGGA	3 cut(s)	277, 1435, 2080
TspRI	CASTG	4 cut(s)	592, 1252, 1819, 2055
Van91I	CCANNNNNTGG	2 cut(s)	398, 479
VpaK11BI	GGWCC	2 cut(s)	1798, 2223
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	8 cut(s)	593, 878, 1061, 1282, 1855, 1942, 2044, 2084
XceI	RCATGY	3 cut(s)	436, 1266, 2273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XhoI	CTCGAG	2 cut(s)	1179, 1698
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	2316
XspI	CTAG	2 cut(s)	1472, 1881
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.