Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006550

Physical Location & Seq

Genomic Coordinates Reverse (-)

20416856 .. 20422773

Gene Structure 5918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGCGCCAGGTCCTATTGAGTCGGCATTGCCGGAATCATCATCGTCGCCGTCGTCGTCGTCTTCCGGCGCTAACTCTGTTGTTGGGAGATCTGCGGTTGAGGATCTTCGTTTCAAGGAGCTGAGAGGTGTGCAATGGCGCTTAAATCTTGGGATTTTGCCTCTTTCTTCTTCCATTGATGATCTTCGCCGCGTCACAGCGGATTGTCGACGAAGATATGCTAGAATGAGAAGACGCCTTCTAGTTGATCCACCCAAGGATGGGAGTAGTTCTCCTGATCTTGCCATGGACAATCCTCTGTCCCAGAACCCAGAAAGCACCTGGGGTCGCTTCTTTCGGAATGCTGAGCTGGAGAAAATGGTTGACCAGGATTTATCACGTTTATACCCAGAACATGGAAGCTACTTCCAAACACCAGGATGTCAAGGCATGCTGAGAAGAATCTTGTTATTGTGGTGTCTCAGACATCCAGAGTGTGGTTACAGACAAGGAATGCATGAACTCTTGGCTCCTCTTCTATATGTTCTTCATGTTGACGTGGAGGGTCTATCTCAAGTGCGAAAGCTATATGAAGATCACTTCACTGATAAATTTGATGATCTATCTTATCATGAAAATGATTCAACTTACAATTTTGATTTAAAAAACCTTCCTGATTCCATGGAAGATGAGGATAGCTTGCAGGGAGATGCATCAAAAGTTAAGAGTCTGGATGAGCTTGATCCCAAGATACAGACCATTGTAATGCTCAGTGATGCTTATGGTGCTGAAGGTGAATTGGGTATTGTCTTATCTGAGAAATTTATGGAACACGATGCATACTGCATGTTTGATGCGTTAATGAGTGGGGTCAATGGTTCAGTTTCTATGGCAGAATTCTTCTCTCCCTCCCCTGCTGTTGGCTCTCAGACTAGCTTACCTCCTGTCATTGAAGCATCTGCTGCATTGTATCATTTGCTGTCTCTTGTTGATTCATCTCTACGCAGCCACCTTGTTGAGCTTGGTGTTGAACCCCAGTATTTTGCACTCCGGTGGTTAAGGGTTTTATTTGGACGTGAATTTTCACTTGCAAATCTATTGATAATTTGGGATGAGATATTTCTGTCTGATAATCGTAAATTAGACAAAGGTGGTGAAGATGATGCAGGATCCAGCTTTAGCATCCTTAGTTCACCTCGAGGAGCATTTATTTCAGCCCTGGCAGTTTCCATGTTACTTCATTTGAGATCTTCCCTTCTTGCCACAGAGAATGCAACTGCATGTCTTCAACGGTTACTAAACTTTCCTGAGAATATTGATTTAAAGAAACTGATACAGAAGGCAACGTCATTGCAGGCTCTTGCTTTGGAGAACAATAGCTCATCCTCATTTCCTTTATATATGGGGCCATATGAACATAGTAAATCAAAGGCTGTGAGAGGTCATAGTCTTTCAATCGACTCCGTTTCTCCAAAAACTCCATTAAGTTTGGTAAATGAAAGCTACTGGGAAGAGAAGTGGAGAGTTCTGCACAGGGAAGAAGAACTTAGGCAAGATATTTTGAAACAACAGGTTCCCAGCCAGAAGAAGCGATGGACTGAAAAAGTAAAATTGAGCCTATCTAGATCAGAATCTGCCCCATCTCCAGCAAAATGTGAGAATGGCAAAAAGACCCCTAGGTTTGCTGTTAGACGAAAGTTGCTGGAAGACCTCTCGAGAGTGCTCAGCTCAGAGGAAGATATTGAGAAATTAGGCACTCACAAAGACAAAGGCTCTTCAGAAGTTGTGGTTAACAAAGAAGATGGTGTCAGTAAGGATCTTACTTCTGCAAATGAAGACAGAAGTTTGAATGGAAGTCCAGCTAGTGAAGAGAACTCATTTGTTGGCTCATATCCAGCAAGTCCTCTGAGTGGGGTAAATGATGAACCTGAATTAGAGAAAAGTAGTGTTGGATCAAACTTATCCATTGATGAAAATAATGATAATCCAAATGATGATAATCCAGAGTGTGTATCAGAAGGCCCACCTCGTCCGGTTTCTGATCCAGCTGAGGGTGTCTCTCAAGCATCTGAGTGCAGCAATCATTCAACGGGGAATTCAGTGACAGGAAAGGAACGAAAGCTTCTTTCTGGTAAATTCCAGAGGTTTTGGAAGTTGGGATGGAGTGCAGCTGGTGAAGGCACGTCCGAGAAAGGGGGCAACGCCCTTGATGCTACAAAATCTATCAGGAGTGATGTTGGTCAGAATGCAGCAAGCTCTTCTATGGCTGAAGGGTCCAATTCTGTAGTTAGCTGCAAAGGAGAAACTGTGGACCAGAATAGGGCGGGTACTTTGAGGAATCTTGGGCATTCTATGCTTGATCATATACAGGTAACTTTCTGGTCTTCATCATCAAATCTCAGCTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

796

Amino Acids

87.77

Weight (kDa)

5.27

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	118 - 176	1.4e-12	Rab-GTPase-TBC domain
RabGAP-TBC	PF00566	268 - 370	1.4e-10	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29950 AT4G29950 AT4G29950 AT5G57210 AT5G57210
fragaria_vesca	FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350
malus_domestica	MD13G1242400.v1.1 MD16G1249600.v1.1
prunus_persica	Prupe.1G076400_v2.0.a1 Prupe.1G076400_v2.0.a1
pyrus_communis	pycom16g20900
rosa_chinensis	RchiOBHm_Chr4g0399721
rosa_laevigata	RLG00000009244
rosa_multiflora	Rmu_ssc0000118.1_g000009
rosa_roxburghii	Rroxscaffold_5G00344660
rosa_rugosa	Rorug04G0018500
rosa_samantha	Rh4AG096100 Rh4BG093600 Rh4CG104900 Rh4DG088900
rosa_wichuraiana	Rw4G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	395, 476
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	1 cut(s)	192
AciI	CCGC	4 cut(s)	95, 190, 200, 2303
AclWI	GGATC	8 cut(s)	111, 242, 716, 1143, 1156, 1803, 1939, 2015
AcsI	RAATTY	6 cut(s)	590, 800, 875, 1058, 2074, 2114
AcuI	CTGAAG	3 cut(s)	789, 1740, 2268
AcyI	GRCGYC	2 cut(s)	5, 235
AfaI	GTAC	1 cut(s)	2308
AfiI	CCNNNNNNNGG	9 cut(s)	260, 261, 395, 476, 899, 1889, 2030, 2172, 2299
AgsI	TTSAA	9 cut(s)	115, 624, 932, 1010, 1268, 1434, 1543, 1828, 2067
AjiI	CACGTC	3 cut(s)	538, 1055, 2163
AjnI	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
AleI	CACNNNNGTG	1 cut(s)	1030
Alw21I	GWGCWC	1 cut(s)	1704
Alw26I	GTCTC	3 cut(s)	464, 966, 2041
AlwI	GGATC	8 cut(s)	111, 242, 716, 1143, 1156, 1803, 1939, 2015
AlwNI	CAGNNNCTG	1 cut(s)	1613
Ama87I	CYCGRG	2 cut(s)	1176, 1693
AoxI	GGCC	2 cut(s)	1385, 1999
ApeKI	GCWGC	6 cut(s)	941, 984, 2055, 2147, 2228, 2271
ApoI	RAATTY	6 cut(s)	590, 800, 875, 1058, 2074, 2114
AspA2I	CCTAGG	1 cut(s)	1655
AspLEI	GCGC	3 cut(s)	7, 71, 141
AspS9I	GGNCC	5 cut(s)	11, 1385, 2000, 2253, 2290
AsuHPI	GGTGA	4 cut(s)	785, 1145, 1164, 2165
AvaI	CYCGRG	2 cut(s)	1176, 1693
AvaII	GGWCC	3 cut(s)	11, 2253, 2290
AvrII	CCTAGG	1 cut(s)	1655
BamHI	GGATCC	1 cut(s)	1148
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	6 cut(s)	54, 238, 1256, 1692, 1821, 2355
Bbv12I	GWGCWC	1 cut(s)	1704
BbvCI	CCTCAGC	1 cut(s)	2028
BbvI	GCAGC	6 cut(s)	928, 996, 2067, 2159, 2240, 2258
BccI	CCATC	5 cut(s)	254, 1566, 1627, 1775, 2133
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
BclI	TGATCA	1 cut(s)	2338
BcoDI	GTCTC	3 cut(s)	464, 966, 2041
BfaI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
BfmI	CTRYAG	1 cut(s)	2262
BfoI	RGCGCY	3 cut(s)	8, 72, 142
BglII	AGATCT	2 cut(s)	89, 1226
BisI	GCNGC	7 cut(s)	190, 942, 985, 2056, 2148, 2229, 2272
BlnI	CCTAGG	1 cut(s)	1655
BlpI	GCTNAGC	2 cut(s)	345, 1703
BlsI	GCNGC	7 cut(s)	191, 943, 986, 2057, 2149, 2230, 2273
Bme1390I	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
Bme18I	GGWCC	3 cut(s)	11, 2253, 2290
BmeT110I	CYCGRG	2 cut(s)	1176, 1693
BmgBI	CACGTC	3 cut(s)	538, 1055, 2163
BmgT120I	GGNCC	5 cut(s)	11, 1385, 2000, 2253, 2290
BmiI	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2254
BmrFI	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
BmrI	ACTGGG	2 cut(s)	1009, 1495
BmuI	ACTGGG	2 cut(s)	1009, 1495
BpiI	GAAGAC	6 cut(s)	54, 238, 1256, 1692, 1821, 2355
BplI	GAGNNNNNCTC	4 cut(s)	256, 288, 2021, 2053
BpmI	CTGGAG	2 cut(s)	371, 1608
Bpu10I	CCTNAGC	1 cut(s)	2028
Bpu1102I	GCTNAGC	2 cut(s)	345, 1703
BpuEI	CTTGAG	2 cut(s)	537, 2025
BsaBI	GATNNNNATC	2 cut(s)	1609, 1977
BsaHI	GRCGYC	2 cut(s)	5, 235
BsaJI	CCNNGG	6 cut(s)	255, 285, 321, 660, 1197, 1655
BsaWI	WCCGGW	2 cut(s)	1029, 2011
BsaXI	ACNNNNNCTCC	2 cut(s)	2271, 2301
Bsc4I	CCNNNNNNNGG	9 cut(s)	260, 261, 395, 476, 899, 1889, 2030, 2172, 2299
Bse1I	ACTGG	2 cut(s)	1015, 1490
Bse3DI	GCAATG	3 cut(s)	26, 140, 1328
Bse8I	GATNNNNATC	2 cut(s)	1609, 1977
BseBI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
BseDI	CCNNGG	6 cut(s)	255, 285, 321, 660, 1197, 1655
BseGI	GGATG	8 cut(s)	265, 425, 466, 718, 1096, 1161, 1361, 2144
BseJI	GATNNNNATC	2 cut(s)	1609, 1977
BseLI	CCNNNNNNNGG	9 cut(s)	260, 261, 395, 476, 899, 1889, 2030, 2172, 2299
BseMI	GCAATG	3 cut(s)	26, 140, 1328
BseNI	ACTGG	2 cut(s)	1015, 1490
BseRI	GAGGAG	2 cut(s)	501, 1194
BseXI	GCAGC	6 cut(s)	928, 996, 2067, 2159, 2240, 2258
BseYI	CCCAGC	1 cut(s)	1556
BsgI	GTGCAG	3 cut(s)	1493, 2074, 2166
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	1387, 2001
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	1704
BsiHKCI	CYCGRG	2 cut(s)	1176, 1693
BsiSI	CCGG	4 cut(s)	32, 66, 1030, 2012
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	9 cut(s)	260, 261, 395, 476, 899, 1889, 2030, 2172, 2299
BsmAI	GTCTC	3 cut(s)	464, 966, 2041
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	5 cut(s)	346, 498, 1255, 2230, 2326
BsnI	GGCC	2 cut(s)	1387, 2001
BsoBI	CYCGRG	2 cut(s)	1176, 1693
Bsp1286I	GDGCHC	1 cut(s)	1704
Bsp1720I	GCTNAGC	2 cut(s)	345, 1703
Bsp19I	CCATGG	2 cut(s)	285, 660
BspACI	CCGC	4 cut(s)	95, 190, 200, 2303
BspANI	GGCC	2 cut(s)	1387, 2001
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2254
BspPI	GGATC	8 cut(s)	111, 242, 716, 1143, 1156, 1803, 1939, 2015
BspQI	GCTCTTC	2 cut(s)	1759, 2242
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	3 cut(s)	26, 140, 1328
BsrI	ACTGG	2 cut(s)	1015, 1490
BssECI	CCNNGG	6 cut(s)	255, 285, 321, 660, 1197, 1655
BssNI	GRCGYC	2 cut(s)	5, 235
BssT1I	CCWWGG	4 cut(s)	255, 285, 660, 1655
Bst2UI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
Bst4CI	ACNGT	2 cut(s)	1272, 2287
Bst6I	CTCTTC	5 cut(s)	519, 1485, 1759, 1842, 2242
BstACI	GRCGYC	2 cut(s)	5, 235
BstAPI	GCANNNNNTGC	2 cut(s)	941, 2332
BstC8I	GCNNGC	4 cut(s)	431, 680, 1335, 2233
BstDSI	CCRYGG	2 cut(s)	285, 660
BstF5I	GGATG	8 cut(s)	265, 425, 466, 718, 1096, 1161, 1361, 2144
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	3 cut(s)	8, 72, 142
BstHHI	GCGC	3 cut(s)	7, 71, 141
BstMAI	GTCTC	3 cut(s)	464, 966, 2041
BstMWI	GCNNNNNNNGC	4 cut(s)	764, 941, 2189, 2332
BstNI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
BstNSI	RCATGY	3 cut(s)	433, 829, 1263
BstSCI	CCNGG	5 cut(s)	7, 320, 366, 415, 1197
BstSFI	CTRYAG	1 cut(s)	2262
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	6 cut(s)	928, 996, 2067, 2159, 2240, 2258
BstV2I	GAAGAC	6 cut(s)	54, 238, 1256, 1692, 1821, 2355
BstX2I	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
BstYI	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
BsuRI	GGCC	2 cut(s)	1387, 2001
BtgI	CCRYGG	2 cut(s)	285, 660
BtgZI	GCGATG	1 cut(s)	1585
BtrI	CACGTC	3 cut(s)	538, 1055, 2163
BtsCI	GGATG	8 cut(s)	265, 425, 466, 718, 1096, 1161, 1361, 2144
BtsIMutI	CAGTG	3 cut(s)	582, 757, 2085
Cac8I	GCNNGC	4 cut(s)	431, 680, 1335, 2233
CaiI	CAGNNNCTG	1 cut(s)	1613
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	3 cut(s)	7, 71, 141
Cfr13I	GGNCC	5 cut(s)	11, 1385, 2000, 2253, 2290
CseI	GACGC	2 cut(s)	181, 243
Csp6I	GTAC	1 cut(s)	2307
CviQI	GTAC	1 cut(s)	2307
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	2 cut(s)	642, 1302
Eam1104I	CTCTTC	5 cut(s)	519, 1485, 1759, 1842, 2242
EarI	CTCTTC	5 cut(s)	519, 1485, 1759, 1842, 2242
Eco130I	CCWWGG	4 cut(s)	255, 285, 660, 1655
Eco47I	GGWCC	3 cut(s)	11, 2253, 2290
Eco57I	CTGAAG	3 cut(s)	789, 1740, 2268
Eco88I	CYCGRG	2 cut(s)	1176, 1693
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRI	GAATTC	2 cut(s)	875, 2074
EcoRII	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
EcoT14I	CCWWGG	4 cut(s)	255, 285, 660, 1655
EcoT22I	ATGCAT	3 cut(s)	498, 694, 820
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	255, 285, 660, 1655
FalI	AAGNNNNNCTT	2 cut(s)	1509, 1541
FaqI	GGGAC	1 cut(s)	286
FauI	CCCGC	1 cut(s)	2296
FauNDI	CATATG	1 cut(s)	1390
FbaI	TGATCA	1 cut(s)	2338
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	7 cut(s)	190, 942, 985, 2056, 2148, 2229, 2272
FokI	GGATG	8 cut(s)	272, 432, 453, 725, 1103, 1148, 1348, 2151
Fsp4HI	GCNGC	7 cut(s)	190, 942, 985, 2056, 2148, 2229, 2272
FspBI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
GlaI	GCGC	3 cut(s)	6, 70, 140
GluI	GCNGC	7 cut(s)	190, 942, 985, 2056, 2148, 2229, 2272
GsaI	CCCAGC	1 cut(s)	1560
GsuI	CTGGAG	2 cut(s)	371, 1608
HaeII	RGCGCY	3 cut(s)	8, 72, 142
HaeIII	GGCC	2 cut(s)	1387, 2001
HapII	CCGG	4 cut(s)	32, 66, 1030, 2012
HgaI	GACGC	2 cut(s)	181, 243
HhaI	GCGC	3 cut(s)	7, 71, 141
Hin1I	GRCGYC	2 cut(s)	5, 235
Hin6I	GCGC	3 cut(s)	5, 69, 139
HinP1I	GCGC	3 cut(s)	5, 69, 139
HincII	GTYRAC	4 cut(s)	209, 364, 535, 1771
HindII	GTYRAC	4 cut(s)	209, 364, 535, 1771
HindIII	AAGCTT	1 cut(s)	2099
HpaI	GTTAAC	1 cut(s)	1771
HpaII	CCGG	4 cut(s)	32, 66, 1030, 2012
HphI	GGTGA	4 cut(s)	785, 1145, 1164, 2165
Hpy166II	GTNNAC	6 cut(s)	209, 364, 535, 1172, 1771, 2290
Hpy8I	GTNNAC	6 cut(s)	209, 364, 535, 1172, 1771, 2290
Hpy99I	CGWCG	5 cut(s)	49, 55, 58, 61, 213
HpyAV	CCTTC	8 cut(s)	248, 659, 764, 1244, 1312, 1991, 2150, 2243
HpyCH4III	ACNGT	2 cut(s)	1272, 2287
HpyCH4IV	ACGT	5 cut(s)	379, 537, 1054, 1325, 2162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	764, 941, 2189, 2332
HpySE526I	ACGT	5 cut(s)	379, 537, 1054, 1325, 2162
Hsp92I	GRCGYC	2 cut(s)	5, 235
HspAI	GCGC	3 cut(s)	5, 69, 139
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	2338
KspAI	GTTAAC	1 cut(s)	1771
LguI	GCTCTTC	2 cut(s)	1759, 2242
LmnI	GCTCC	3 cut(s)	118, 514, 1181
Lsp1109I	GCAGC	6 cut(s)	928, 996, 2067, 2159, 2240, 2258
MaeI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
MaeII	ACGT	5 cut(s)	379, 537, 1054, 1325, 2162
MaeIII	GTNAC	6 cut(s)	193, 479, 1212, 1272, 2080, 2350
MflI	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
MhlI	GDGCHC	1 cut(s)	1704
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	29, 715, 1433
MmeI	TCCRAC	1 cut(s)	1909
Mph1103I	ATGCAT	3 cut(s)	498, 694, 820
MseI	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
MslI	CAYNNNNRTG	5 cut(s)	418, 615, 743, 1030, 2050
MspA1I	CMGCKG	3 cut(s)	200, 2027, 2150
MspI	CCGG	4 cut(s)	32, 66, 1030, 2012
MspR9I	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
Mva1269I	GAATGC	5 cut(s)	346, 498, 1255, 2230, 2326
MvaI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	764, 941, 2189, 2332
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	2 cut(s)	285, 660
NdeI	CATATG	1 cut(s)	1390
NlaIV	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2254
NmuCI	GTSAC	2 cut(s)	193, 2080
NsiI	ATGCAT	3 cut(s)	498, 694, 820
NspI	RCATGY	3 cut(s)	433, 829, 1263
OliI	CACNNNNGTG	1 cut(s)	1030
PaeI	GCATGC	1 cut(s)	433
PaeR7I	CTCGAG	2 cut(s)	1176, 1693
PagI	TCATGA	1 cut(s)	610
PciSI	GCTCTTC	2 cut(s)	1759, 2242
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 53
PctI	GAATGC	5 cut(s)	346, 498, 1255, 2230, 2326
PfeI	GAWTC	7 cut(s)	35, 441, 620, 656, 971, 1610, 2317
PflMI	CCANNNNNTGG	2 cut(s)	395, 476
PkrI	GCNGC	7 cut(s)	191, 943, 986, 2057, 2149, 2230, 2273
PleI	GAGTC	3 cut(s)	28, 714, 1433
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	28, 714, 1433
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
PspFI	CCCAGC	1 cut(s)	1556
PspGI	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
PspN4I	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2254
PspPI	GGNCC	5 cut(s)	11, 1385, 2000, 2253, 2290
PspPPI	RGGWCCY	1 cut(s)	11
PspXI	VCTCGAGB	1 cut(s)	1176
PstNI	CAGNNNCTG	1 cut(s)	1613
PsuI	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
PvuII	CAGCTG	2 cut(s)	2027, 2150
RsaI	GTAC	1 cut(s)	2308
RsaNI	GTAC	1 cut(s)	2307
RseI	CAYNNNNRTG	5 cut(s)	418, 615, 743, 1030, 2050
SalI	GTCGAC	1 cut(s)	207
SapI	GCTCTTC	2 cut(s)	1759, 2242
SaqAI	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
SatI	GCNGC	7 cut(s)	190, 942, 985, 2056, 2148, 2229, 2272
Sau96I	GGNCC	5 cut(s)	11, 1385, 2000, 2253, 2290
SchI	GAGTC	3 cut(s)	29, 715, 1433
ScrFI	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
SduI	GDGCHC	1 cut(s)	1704
SfcI	CTRYAG	1 cut(s)	2262
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	2 cut(s)	1176, 1693
SinI	GGWCC	3 cut(s)	11, 2253, 2290
SlaI	CTCGAG	2 cut(s)	1176, 1693
SmiMI	CAYNNNNRTG	5 cut(s)	418, 615, 743, 1030, 2050
SmlI	CTYRAG	4 cut(s)	552, 1176, 1693, 2040
SmoI	CTYRAG	4 cut(s)	552, 1176, 1693, 2040
SphI	GCATGC	1 cut(s)	433
SsiI	CCGC	4 cut(s)	95, 190, 200, 2303
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1294
SspMI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
StyD4I	CCNGG	5 cut(s)	7, 320, 366, 415, 1197
StyI	CCWWGG	4 cut(s)	255, 285, 660, 1655
TaaI	ACNGT	2 cut(s)	1272, 2287
TaiI	ACGT	5 cut(s)	382, 540, 1057, 1328, 2165
TaqI	TCGA	4 cut(s)	208, 1177, 1437, 1694
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	7 cut(s)	35, 441, 620, 656, 971, 1610, 2317
Tru1I	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
Tru9I	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
TscAI	CASTG	3 cut(s)	589, 757, 2085
TseFI	GTSAC	2 cut(s)	193, 2080
TseI	GCWGC	6 cut(s)	941, 984, 2055, 2147, 2228, 2271
Tsp45I	GTSAC	2 cut(s)	193, 2080
TspGWI	ACGGA	1 cut(s)	1432
TspRI	CASTG	3 cut(s)	589, 757, 2085
Van91I	CCANNNNNTGG	2 cut(s)	395, 476
VpaK11BI	GGWCC	3 cut(s)	11, 2253, 2290
XapI	RAATTY	6 cut(s)	590, 800, 875, 1058, 2074, 2114
XbaI	TCTAGA	1 cut(s)	1601
XceI	RCATGY	3 cut(s)	433, 829, 1263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	2 cut(s)	1176, 1693
XmaJI	CCTAGG	1 cut(s)	1655
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
Zsp2I	ATGCAT	3 cut(s)	498, 694, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.