Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006550

Physical Location & Seq

Genomic Coordinates Reverse (-)

17011662 .. 17016968

Gene Structure 5307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGGCGCCAGGTCCTATTGAGTCGGCATTGCCGGAATCATCATCGTCGCCGTCGTCGTCGTCTTCCGGCGCTAACTCTGTTGTTGAGAGATCTGCGGTTGAGGATCTTCGTTTCAAGGAGCTGAGAGGTGTGCAATGGCGCTTAAATCTTGGGATTTTGCCTCTTTCTTCTTCCATTGATGATCTTCGCCGCGTCACAGCGGATTGTCGACGAAGATATGCTAGAATGAGAAGACACCTTCTAGTTGATCCGCCTAAGGATGGGAGTAGTTCTCCTGATCTTGCCATGGACAATCCTCTGTCCCAGAACCCAGAAAGCACCTGGGGTCGCTTCTTTCGGAATGCTGAGCTGGAGAAAATGGTTGACCAGGATTTATCACGTTTATACCCAGAACATGGAAGCTACTTCCAAACACCAGGATGTCAAGGCATGCTGAGAAGAATCTTGTTATTGTGGTGTCTCAGACATCCAGAGTGTGGTTACAGACAAGGAATGCATGAACTCTTGGCTCCTCTTCTATATGTTCTTCATGTTGACGTGGAGGGTCTATCTCAAGTGCGAAAGCTATATGAAGATCACTTCACTGATAAATTTGATGATCTATCTTATCATGAAAATGATTCAACTTACAATTTTGATTTAAAAAACCTTCCTGATTCCATGGAAGATGAGGATAGCTTGCAGGGAGATGCATCAAAAGTTAAGAGTCTGGATGAGCTTGATCCCAAGATACAGACCATTGTAATGCTCAGTGATGCTTATGGTGCTGAAGGTGAATTGGGTATTGTCTTATCTGAGAAATTTATGGAACACGATGCATACTGCATGTTTGATGCGTTAATGAGTGGGGTCAATGGTTCAGTTTCTATGGCAGAATTCTTCTCTCCCTCCCCTGCTGTTGGCTCTCAGACTAGCTTACCTCCTGTCATTGAAGCATCTGCTGCATTGTATCATTTGCTGTCTCTTGTTGATTCATCTCTACGCAGCCACCTTGTTGAGCTTGGTGTTGAACCCCAGTATTTTGCACTCCGGTGGTTAAGGGTTTTATTTGGACGTGAATTTTCACTTGCAAATCTATTGATAATTTGGGATGAGATATTTCTGTCTGATAATCATAAATTAGACAAAGGTGGTGAAGATGATGCAGGATCCAGCTTTAGCATCCTTAGTTCACCTCGAGGAGCATTTATTTCAGCCCTGGCAGTTTCCATGTTACTTCATTTGAGATCTTCCCTTCTTGCCACAGAGAATGCAACTGCATGTCTTCAACGGTTACTAAACTTTCCTGAGAATATTGATTTAAAGAAACTGATACAGAAGGCAACGTCATTGCAGGCTCTTGCTTTGGAGAACAATAGCTCATCCTCATTTCCTTTATATATGGGGCCATATGAACATAGTAAATCAAAGGCTGTGAGAGGTCAGAGTCTTTCAATCGACTCCGTTTCTCCAAAAACTCCATTAAGTTTGGTAAATGAAAGCTACTGGGAAGAGAAGTGGAGAGTTCTGCACAGGGAAGAAGAACTTAGGCAAGATATTTTGAAACAACAGGTTCCCAGCCAGAAGAAGCGATGGACTGAAAAAGTAAAATTGAGCCTATCTAGATCAGAATCTGCCCCATCTCCAGCAAAATGTGAGAATGGCAAAAAGACCCCTAGGTTTGCTGTTAGACGAAAGTTGCTGGAAGACCTCTCGAGAGTGCTCAGCTCAGAGGAAGATATTGAGAAATTAGGCACTCACAAAGACAAAGGCTCTTCAGAAGTTGTGGTTAACAAAGAAGATGGTGTCAGTAAGGATCTTACTTCTGCAAATGAAGACAGAAGTTTGAATGGAAGTCCAGCTAGTGAAGAGAACTCATTTATTGGCTCATATCCAGCAAGTCCTCTGAGTGGGGCAAATGATGAACCTGAATTAGAGAAAAGTAGTGTTGGATCAAACTTATCCATTGATGAAAATAATGATAATCCAAATGATGATAATCCAGAGTGTGTATCAGAAGGCCCACCTCGTCCGGTTTCTGATCCAGTTTCTGATCCAGCTGACGGTGTCTCTCAAGCATCCGAGTGCAGCAATCATTCAACGGGGAATTCAGTGACAGGAAAGGAACGAAAGCTTCTTTCTGGTAAATTCCAGAGGTTTTGGAAGTTGGGATGGAGTGCAGCTGGTGAAGGCACGTCCGAGAAAGGGGGCAACGCCCTTGATGCTACAAAATCTATCAGGAGTGATGTTGGTCAGAATGCAGCAAGCTCTTCTATGGCTGAAGGGTCCAATTCTGTAGTTAGCTGCAAAGGGGAAACTGTGGACCAGAATAGGGCGGGTACTTTGAGGAATCTTGGGCATTCTATGCTTGATCATATACAGGTAATCGAGTCTGCTTTCCAGCAAGATCGAGGTGTTCAAGTGGGATCGGTCGAGAACTGTTCAAAAAATACTTTAGTTGGCAAAGGACAAGTAACGGCCATTGCAGCTCTCAAGGAGCTTCGGAAGATCAGCAATCTTTTGTCAGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

837

Amino Acids

92.02

Weight (kDa)

5.2

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	118 - 176	1.5e-12	Rab-GTPase-TBC domain
RabGAP-TBC	PF00566	268 - 371	1.1e-10	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29950 AT4G29950 AT4G29950 AT5G57210 AT5G57210
fragaria_vesca	FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350
malus_domestica	MD13G1242400.v1.1 MD16G1249600.v1.1
prunus_persica	Prupe.1G076400_v2.0.a1 Prupe.1G076400_v2.0.a1
pyrus_communis	pycom16g20900
rosa_chinensis	RchiOBHm_Chr4g0399721
rosa_laevigata	RLG00000009244
rosa_multiflora	Rmu_ssc0000118.1_g000009
rosa_roxburghii	Rroxscaffold_5G00344660
rosa_rugosa	Rorug04G0018500
rosa_samantha	Rh4AG096100 Rh4BG093600 Rh4CG104900 Rh4DG088900
rosa_wichuraiana	Rw4G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	395, 476
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	1 cut(s)	192
AciI	CCGC	5 cut(s)	95, 190, 200, 251, 2315
AcoI	YGGCCR	1 cut(s)	2457
AcsI	RAATTY	6 cut(s)	590, 800, 875, 1058, 2086, 2126
AcuI	CTGAAG	3 cut(s)	789, 1740, 2280
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	2320
AfiI	CCNNNNNNNGG	8 cut(s)	260, 395, 476, 899, 1889, 2042, 2184, 2311
AjiI	CACGTC	3 cut(s)	538, 1055, 2175
AjnI	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
AleI	CACNNNNGTG	1 cut(s)	1030
Alw21I	GWGCWC	1 cut(s)	1704
Alw26I	GTCTC	3 cut(s)	464, 966, 2053
AlwNI	CAGNNNCTG	2 cut(s)	1613, 2030
Ama87I	CYCGRG	2 cut(s)	1176, 1693
AoxI	GGCC	3 cut(s)	1385, 1999, 2457
ApeKI	GCWGC	7 cut(s)	941, 984, 2067, 2159, 2240, 2283, 2465
ApoI	RAATTY	6 cut(s)	590, 800, 875, 1058, 2086, 2126
AspA2I	CCTAGG	1 cut(s)	1655
AspLEI	GCGC	3 cut(s)	7, 71, 141
AspS9I	GGNCC	5 cut(s)	11, 1385, 2000, 2265, 2302
AsuHPI	GGTGA	4 cut(s)	785, 1145, 1164, 2177
AvaI	CYCGRG	2 cut(s)	1176, 1693
AvaII	GGWCC	3 cut(s)	11, 2265, 2302
AvrII	CCTAGG	1 cut(s)	1655
AxyI	CCTNAGG	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	1148
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	5 cut(s)	54, 238, 1256, 1692, 1821
Bbv12I	GWGCWC	1 cut(s)	1704
BbvI	GCAGC	7 cut(s)	928, 996, 2079, 2171, 2252, 2270, 2477
BccI	CCATC	5 cut(s)	254, 1566, 1627, 1775, 2145
BceAI	ACGGC	2 cut(s)	34, 2472
BciT130I	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
BclI	TGATCA	1 cut(s)	2350
BcoDI	GTCTC	3 cut(s)	464, 966, 2053
BfaI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
BfmI	CTRYAG	1 cut(s)	2274
BfoI	RGCGCY	3 cut(s)	8, 72, 142
BglII	AGATCT	2 cut(s)	89, 1226
BisI	GCNGC	8 cut(s)	190, 942, 985, 2068, 2160, 2241, 2284, 2466
BlnI	CCTAGG	1 cut(s)	1655
BlpI	GCTNAGC	2 cut(s)	345, 1703
BlsI	GCNGC	8 cut(s)	191, 943, 986, 2069, 2161, 2242, 2285, 2467
Bme1390I	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
Bme18I	GGWCC	3 cut(s)	11, 2265, 2302
BmeT110I	CYCGRG	2 cut(s)	1176, 1693
BmgBI	CACGTC	3 cut(s)	538, 1055, 2175
BmgT120I	GGNCC	5 cut(s)	11, 1385, 2000, 2265, 2302
BmiI	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2266
BmrFI	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
BmrI	ACTGGG	2 cut(s)	1009, 1495
BmuI	ACTGGG	2 cut(s)	1009, 1495
BpiI	GAAGAC	5 cut(s)	54, 238, 1256, 1692, 1821
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpmI	CTGGAG	2 cut(s)	371, 1608
Bpu1102I	GCTNAGC	2 cut(s)	345, 1703
BpuEI	CTTGAG	3 cut(s)	537, 2037, 2456
BsaBI	GATNNNNATC	2 cut(s)	1609, 1977
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	285, 321, 660, 1197, 1655
BsaWI	WCCGGW	2 cut(s)	1029, 2011
Bsc4I	CCNNNNNNNGG	8 cut(s)	260, 395, 476, 899, 1889, 2042, 2184, 2311
Bse1I	ACTGG	3 cut(s)	1015, 1490, 2024
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	4 cut(s)	26, 140, 1328, 2460
Bse8I	GATNNNNATC	2 cut(s)	1609, 1977
BseBI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
BseDI	CCNNGG	5 cut(s)	285, 321, 660, 1197, 1655
BseGI	GGATG	9 cut(s)	265, 425, 466, 718, 1096, 1161, 1361, 2057, 2156
BseJI	GATNNNNATC	2 cut(s)	1609, 1977
BseLI	CCNNNNNNNGG	8 cut(s)	260, 395, 476, 899, 1889, 2042, 2184, 2311
BseMI	GCAATG	4 cut(s)	26, 140, 1328, 2460
BseNI	ACTGG	3 cut(s)	1015, 1490, 2024
BseRI	GAGGAG	2 cut(s)	501, 1194
BseXI	GCAGC	7 cut(s)	928, 996, 2079, 2171, 2252, 2270, 2477
BseYI	CCCAGC	1 cut(s)	1556
BsgI	GTGCAG	3 cut(s)	1493, 2086, 2178
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	2412
BshFI	GGCC	3 cut(s)	1387, 2001, 2459
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	2412
BsiHKAI	GWGCWC	1 cut(s)	1704
BsiHKCI	CYCGRG	2 cut(s)	1176, 1693
BsiSI	CCGG	4 cut(s)	32, 66, 1030, 2012
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	8 cut(s)	260, 395, 476, 899, 1889, 2042, 2184, 2311
BsmAI	GTCTC	3 cut(s)	464, 966, 2053
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	5 cut(s)	346, 498, 1255, 2242, 2338
BsnI	GGCC	3 cut(s)	1387, 2001, 2459
BsoBI	CYCGRG	2 cut(s)	1176, 1693
Bsp1286I	GDGCHC	1 cut(s)	1704
Bsp1720I	GCTNAGC	2 cut(s)	345, 1703
Bsp19I	CCATGG	2 cut(s)	285, 660
BspACI	CCGC	5 cut(s)	95, 190, 200, 251, 2315
BspANI	GGCC	3 cut(s)	1387, 2001, 2459
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2266
BspQI	GCTCTTC	2 cut(s)	1759, 2254
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	4 cut(s)	26, 140, 1328, 2460
BsrI	ACTGG	3 cut(s)	1015, 1490, 2024
BssECI	CCNNGG	5 cut(s)	285, 321, 660, 1197, 1655
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	285, 660, 1655
Bst2UI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
Bst4CI	ACNGT	4 cut(s)	1272, 2045, 2299, 2420
Bst6I	CTCTTC	5 cut(s)	519, 1485, 1759, 1842, 2254
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	941, 2344
BstC8I	GCNNGC	4 cut(s)	431, 680, 1335, 2245
BstDSI	CCRYGG	2 cut(s)	285, 660
BstF5I	GGATG	9 cut(s)	265, 425, 466, 718, 1096, 1161, 1361, 2057, 2156
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	3 cut(s)	8, 72, 142
BstHHI	GCGC	3 cut(s)	7, 71, 141
BstMAI	GTCTC	3 cut(s)	464, 966, 2053
BstMCI	CGRYCG	1 cut(s)	2412
BstMWI	GCNNNNNNNGC	5 cut(s)	764, 941, 2201, 2344, 2465
BstNI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
BstNSI	RCATGY	3 cut(s)	433, 829, 1263
BstSCI	CCNGG	5 cut(s)	7, 320, 366, 415, 1197
BstSFI	CTRYAG	1 cut(s)	2274
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	7 cut(s)	928, 996, 2079, 2171, 2252, 2270, 2477
BstV2I	GAAGAC	5 cut(s)	54, 238, 1256, 1692, 1821
BstX2I	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
BstYI	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	1387, 2001, 2459
BtgI	CCRYGG	2 cut(s)	285, 660
BtgZI	GCGATG	1 cut(s)	1585
BtrI	CACGTC	3 cut(s)	538, 1055, 2175
BtsCI	GGATG	9 cut(s)	265, 425, 466, 718, 1096, 1161, 1361, 2057, 2156
BtsIMutI	CAGTG	3 cut(s)	582, 757, 2097
Cac8I	GCNNGC	4 cut(s)	431, 680, 1335, 2245
CaiI	CAGNNNCTG	2 cut(s)	1613, 2030
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	3 cut(s)	7, 71, 141
Cfr13I	GGNCC	5 cut(s)	11, 1385, 2000, 2265, 2302
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	2319
CviQI	GTAC	1 cut(s)	2319
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	2 cut(s)	642, 1302
EaeI	YGGCCR	1 cut(s)	2457
Eam1104I	CTCTTC	5 cut(s)	519, 1485, 1759, 1842, 2254
EarI	CTCTTC	5 cut(s)	519, 1485, 1759, 1842, 2254
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	3 cut(s)	285, 660, 1655
Eco47I	GGWCC	3 cut(s)	11, 2265, 2302
Eco57I	CTGAAG	3 cut(s)	789, 1740, 2280
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	1176, 1693
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRI	GAATTC	2 cut(s)	875, 2086
EcoRII	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
EcoT14I	CCWWGG	3 cut(s)	285, 660, 1655
EcoT22I	ATGCAT	3 cut(s)	498, 694, 820
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	285, 660, 1655
FalI	AAGNNNNNCTT	2 cut(s)	1509, 1541
FaqI	GGGAC	1 cut(s)	286
FauI	CCCGC	1 cut(s)	2308
FauNDI	CATATG	1 cut(s)	1390
FbaI	TGATCA	1 cut(s)	2350
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	8 cut(s)	190, 942, 985, 2068, 2160, 2241, 2284, 2466
FokI	GGATG	9 cut(s)	272, 432, 453, 725, 1103, 1148, 1348, 2044, 2163
Fsp4HI	GCNGC	8 cut(s)	190, 942, 985, 2068, 2160, 2241, 2284, 2466
FspBI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
GlaI	GCGC	3 cut(s)	6, 70, 140
GluI	GCNGC	8 cut(s)	190, 942, 985, 2068, 2160, 2241, 2284, 2466
GsaI	CCCAGC	1 cut(s)	1560
GsuI	CTGGAG	2 cut(s)	371, 1608
HaeII	RGCGCY	3 cut(s)	8, 72, 142
HaeIII	GGCC	3 cut(s)	1387, 2001, 2459
HapII	CCGG	4 cut(s)	32, 66, 1030, 2012
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	7, 71, 141
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	3 cut(s)	5, 69, 139
HinP1I	GCGC	3 cut(s)	5, 69, 139
HincII	GTYRAC	4 cut(s)	209, 364, 535, 1771
HindII	GTYRAC	4 cut(s)	209, 364, 535, 1771
HindIII	AAGCTT	1 cut(s)	2111
HpaI	GTTAAC	1 cut(s)	1771
HpaII	CCGG	4 cut(s)	32, 66, 1030, 2012
HphI	GGTGA	4 cut(s)	785, 1145, 1164, 2177
Hpy166II	GTNNAC	6 cut(s)	209, 364, 535, 1172, 1771, 2302
Hpy8I	GTNNAC	6 cut(s)	209, 364, 535, 1172, 1771, 2302
Hpy99I	CGWCG	5 cut(s)	49, 55, 58, 61, 213
HpyAV	CCTTC	8 cut(s)	248, 659, 764, 1244, 1312, 1991, 2162, 2255
HpyCH4III	ACNGT	4 cut(s)	1272, 2045, 2299, 2420
HpyCH4IV	ACGT	5 cut(s)	379, 537, 1054, 1325, 2174
HpyF10VI	GCNNNNNNNGC	5 cut(s)	764, 941, 2201, 2344, 2465
HpySE526I	ACGT	5 cut(s)	379, 537, 1054, 1325, 2174
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	3 cut(s)	5, 69, 139
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	2350
KspAI	GTTAAC	1 cut(s)	1771
LguI	GCTCTTC	2 cut(s)	1759, 2254
LmnI	GCTCC	4 cut(s)	118, 514, 1181, 2476
Lsp1109I	GCAGC	7 cut(s)	928, 996, 2079, 2171, 2252, 2270, 2477
MaeI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
MaeII	ACGT	5 cut(s)	379, 537, 1054, 1325, 2174
MaeIII	GTNAC	6 cut(s)	193, 479, 1212, 1272, 2092, 2452
MflI	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
MhlI	GDGCHC	1 cut(s)	1704
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	29, 715, 1433, 1435, 2378
MmeI	TCCRAC	1 cut(s)	1909
Mph1103I	ATGCAT	3 cut(s)	498, 694, 820
MseI	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
MslI	CAYNNNNRTG	5 cut(s)	418, 615, 743, 1030, 2062
MspA1I	CMGCKG	3 cut(s)	200, 2039, 2162
MspI	CCGG	4 cut(s)	32, 66, 1030, 2012
MspR9I	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
Mva1269I	GAATGC	5 cut(s)	346, 498, 1255, 2242, 2338
MvaI	CCWGG	5 cut(s)	9, 322, 368, 417, 1199
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	764, 941, 2201, 2344, 2465
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	2 cut(s)	285, 660
NdeI	CATATG	1 cut(s)	1390
NlaIV	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2266
NmuCI	GTSAC	2 cut(s)	193, 2092
NsiI	ATGCAT	3 cut(s)	498, 694, 820
NspI	RCATGY	3 cut(s)	433, 829, 1263
OliI	CACNNNNGTG	1 cut(s)	1030
PaeI	GCATGC	1 cut(s)	433
PaeR7I	CTCGAG	2 cut(s)	1176, 1693
PagI	TCATGA	1 cut(s)	610
PciSI	GCTCTTC	2 cut(s)	1759, 2254
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 53
PctI	GAATGC	5 cut(s)	346, 498, 1255, 2242, 2338
PfeI	GAWTC	7 cut(s)	35, 441, 620, 656, 971, 1610, 2329
PflFI	GACNNNGTC	1 cut(s)	2045
PflMI	CCANNNNNTGG	2 cut(s)	395, 476
PkrI	GCNGC	8 cut(s)	191, 943, 986, 2069, 2161, 2242, 2285, 2467
PleI	GAGTC	5 cut(s)	28, 714, 1433, 1434, 2377
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	5 cut(s)	28, 714, 1433, 1434, 2377
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
PspFI	CCCAGC	1 cut(s)	1556
PspGI	CCWGG	5 cut(s)	7, 320, 366, 415, 1197
PspN4I	GGNNCC	6 cut(s)	6, 510, 1150, 1386, 1554, 2266
PspPI	GGNCC	5 cut(s)	11, 1385, 2000, 2265, 2302
PspPPI	RGGWCCY	1 cut(s)	11
PspXI	VCTCGAGB	1 cut(s)	1176
PstNI	CAGNNNCTG	2 cut(s)	1613, 2030
PsuI	RGATCY	5 cut(s)	89, 103, 1148, 1226, 1795
PsyI	GACNNNGTC	1 cut(s)	2045
PvuII	CAGCTG	2 cut(s)	2039, 2162
RsaI	GTAC	1 cut(s)	2320
RsaNI	GTAC	1 cut(s)	2319
RseI	CAYNNNNRTG	5 cut(s)	418, 615, 743, 1030, 2062
SalI	GTCGAC	1 cut(s)	207
SapI	GCTCTTC	2 cut(s)	1759, 2254
SaqAI	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
SatI	GCNGC	8 cut(s)	190, 942, 985, 2068, 2160, 2241, 2284, 2466
Sau96I	GGNCC	5 cut(s)	11, 1385, 2000, 2265, 2302
SchI	GAGTC	5 cut(s)	29, 715, 1433, 1435, 2378
ScrFI	CCNGG	5 cut(s)	9, 322, 368, 417, 1199
SduI	GDGCHC	1 cut(s)	1704
SfcI	CTRYAG	1 cut(s)	2274
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	2 cut(s)	1176, 1693
SinI	GGWCC	3 cut(s)	11, 2265, 2302
SlaI	CTCGAG	2 cut(s)	1176, 1693
SmiMI	CAYNNNNRTG	5 cut(s)	418, 615, 743, 1030, 2062
SmlI	CTYRAG	5 cut(s)	552, 1176, 1693, 2052, 2471
SmoI	CTYRAG	5 cut(s)	552, 1176, 1693, 2052, 2471
SphI	GCATGC	1 cut(s)	433
SsiI	CCGC	5 cut(s)	95, 190, 200, 251, 2315
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1294
SspMI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
StyD4I	CCNGG	5 cut(s)	7, 320, 366, 415, 1197
StyI	CCWWGG	3 cut(s)	285, 660, 1655
TaaI	ACNGT	4 cut(s)	1272, 2045, 2299, 2420
TaiI	ACGT	5 cut(s)	382, 540, 1057, 1328, 2177
TaqI	TCGA	7 cut(s)	208, 1177, 1437, 1694, 2367, 2389, 2412
TaqII	GACCGA	1 cut(s)	2398
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	7 cut(s)	35, 441, 620, 656, 971, 1610, 2329
Tru1I	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
Tru9I	TTAA	8 cut(s)	143, 641, 702, 839, 1037, 1301, 1463, 1770
TscAI	CASTG	3 cut(s)	589, 757, 2097
TseFI	GTSAC	2 cut(s)	193, 2092
TseI	GCWGC	7 cut(s)	941, 984, 2067, 2159, 2240, 2283, 2465
Tsp45I	GTSAC	2 cut(s)	193, 2092
TspGWI	ACGGA	1 cut(s)	1432
TspRI	CASTG	3 cut(s)	589, 757, 2097
Tth111I	GACNNNGTC	1 cut(s)	2045
Van91I	CCANNNNNTGG	2 cut(s)	395, 476
VpaK11BI	GGWCC	3 cut(s)	11, 2265, 2302
XapI	RAATTY	6 cut(s)	590, 800, 875, 1058, 2086, 2126
XbaI	TCTAGA	1 cut(s)	1601
XceI	RCATGY	3 cut(s)	433, 829, 1263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	2 cut(s)	1176, 1693
XmaJI	CCTAGG	1 cut(s)	1655
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	6 cut(s)	222, 242, 912, 1602, 1656, 1842
Zsp2I	ATGCAT	3 cut(s)	498, 694, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.