Rmu_ssc0000118.1_g000009

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000118.1
Physical Location & Seq
Forward (+)
31936 .. 35228
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000118.1_g000009.1.cds

Sequence Viewer

Length: 2208 bp
atgtgtatcttacatgcagaaagcacctggggtcgcttctttcggaatgctgagctggagaaaatggttgaccaggatttatcacgtttatacccagaacatggaagctacttccaaacaccaggatgtcaaggcatgctgagaagaatcttgttattgtggtgtctcagacatccagagtgtggttacagacaaggaatgcatgaactcttggctcctcttctatatgttcttcatgttgacgtggagggtctatctcaagtgcgaaagctatatgaagatcacttcactgataaatttgatgatctatcttatcatgaaaatgattcaacttacaattttgatttaaaaaatcttcctgattccatggaagatgaggatagcttgcagggagatgcatcaaaagttaagagtctggatgagcttgatcccaagatacagaccattgtaatgctcagtgatgcttatggtgctgaaggtgaattgggtattgtcttatctgagaaatttatggaacacgatgcatactgcatgtttgatgcgttaatgagtggggtcaatggttcagtttctatggcagaattcttctctccctcccctgctgttggctctcagactagcttacctcctgtcattgaagcatctgctgcattgtatcatttgctgtctcttgttgattcatctctacgcagccaccttgttgagcttggtgttgaaccccagtattttgcactccggtggttaagggttttatttggacgtgaattttcacttgcaaatctattgataatttgggatgagatatttctgtctgataatcgtaaattagacaaaggtggtgaagatgatgcaggatccagctttagcatccttagttcacctcgaggagcatttatttcagccctggcagtttccatgttacttcatttgagatcttcccttcttgccacagagaatgcaactgcatgtcttcaacggttactaaactttcctgagaatattgatttaaagaaactgatacagaaggcaacgtcattgcaggctcttgctttggagaacaatagctcatcctcatttcctttatatatgggtccatatgaacatagtaaatcaaaggctgtgagaggtcatagtctttcaatcgactccgtttctccaaaaactccattaagtttggtaaatgaaagctactgggaagagaagtggagagttctgcacagggaagaagaacttaggcaagatattttgaaacaacaggttcccagccagaagaagcgatggactgaaaaagtaaaattgagcctatctagatcagaatctgccccatctccagcaaaatgtgagaatggcaaaaagacccctaggtttgctgttagacgaaagttgctggaagacctctcgagagtgctcagctcagaggaagatattgagaaattaggcactcacaaagacaaaggctcttcagaagttgtggttaacaaagaagatggtgtcagtaaggatcttacttctgcaaatgaagacagaagtttgaatggaagtccagctagtgaagagaactcatttgttggctcatatccagcaagtcctctgagtggggtaaatgatgaacctgaattagagaaaagtagtgttggatcaaacttatccattgatgaaaataatgataatccaaatgatgataatccagagtgtgtatcagaaggcccacctcgtccagtttctgatccagctgagggtgtctctcaagcatccgagtgcagcaatcattcaacggggaattcagtgacaggaaaggaacgaaagcttctttctggtaaattccagaggttttggaagttgggatggagtgcagctggtgaaggcacgtccgagaaagggggcaacgcccttgatgctacaaaatctatcaggagtgatgttggtcagaatgcagcaagctcttctatggctgaagggtccaattctgtagttagctgcaaaggggaaactgtggaccagaatagggcgggtactttgaggaatcttgggcattctatgcttgatcatatacaggtaatcgagtctgctttccagcaagatcgaggtgttcaagtgggatcggtcgagaactgttcaaaaaatactttagttggcaaaggacaagtaacggccattgcagctctcaaggagcttcggaagatcagcaatcttttgtcagaaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

735

Amino Acids

81.01

Weight (kDa)

5.19

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 882
AccB7I CCANNNNNTGG 2 cut(s) 101, 182
AciI CCGC 1 cut(s) 2009
AclWI GGATC 7 cut(s) 422, 849, 862, 1509, 1645, 1721, 2107
AcoI YGGCCR 1 cut(s) 2151
AcsI RAATTY 6 cut(s) 296, 506, 581, 764, 1780, 1820
AcuI CTGAAG 3 cut(s) 495, 1446, 1974
AfaI GTAC 1 cut(s) 2014
AfiI CCNNNNNNNGG 7 cut(s) 101, 182, 605, 1595, 1736, 1878, 2005
AjiI CACGTC 3 cut(s) 244, 761, 1869
AjnI CCWGG 4 cut(s) 26, 72, 121, 903
AleI CACNNNNGTG 1 cut(s) 736
Alw21I GWGCWC 1 cut(s) 1410
Alw26I GTCTC 3 cut(s) 170, 672, 1747
AlwI GGATC 7 cut(s) 422, 849, 862, 1509, 1645, 1721, 2107
AlwNI CAGNNNCTG 2 cut(s) 1319, 1724
Ama87I CYCGRG 2 cut(s) 882, 1399
AoxI GGCC 2 cut(s) 1705, 2151
ApeKI GCWGC 7 cut(s) 647, 690, 1761, 1853, 1934, 1977, 2159
ApoI RAATTY 6 cut(s) 296, 506, 581, 764, 1780, 1820
AspA2I CCTAGG 1 cut(s) 1361
AspS9I GGNCC 4 cut(s) 1091, 1706, 1959, 1996
AsuHPI GGTGA 4 cut(s) 491, 851, 870, 1871
AvaI CYCGRG 2 cut(s) 882, 1399
AvaII GGWCC 3 cut(s) 1091, 1959, 1996
AvrII CCTAGG 1 cut(s) 1361
BamHI GGATCC 1 cut(s) 854
BbsI GAAGAC 3 cut(s) 962, 1398, 1527
Bbv12I GWGCWC 1 cut(s) 1410
BbvCI CCTCAGC 1 cut(s) 1734
BbvI GCAGC 7 cut(s) 634, 702, 1773, 1865, 1946, 1964, 2171
BccI CCATC 4 cut(s) 1272, 1333, 1481, 1839
BceAI ACGGC 1 cut(s) 2166
BciT130I CCWGG 4 cut(s) 28, 74, 123, 905
BclI TGATCA 1 cut(s) 2044
BcoDI GTCTC 3 cut(s) 170, 672, 1747
BfaI CTAG 4 cut(s) 618, 1308, 1362, 1548
BfmI CTRYAG 1 cut(s) 1968
BglII AGATCT 1 cut(s) 932
BisI GCNGC 7 cut(s) 648, 691, 1762, 1854, 1935, 1978, 2160
BlnI CCTAGG 1 cut(s) 1361
BlpI GCTNAGC 2 cut(s) 51, 1409
BlsI GCNGC 7 cut(s) 649, 692, 1763, 1855, 1936, 1979, 2161
Bme1390I CCNGG 4 cut(s) 28, 74, 123, 905
Bme18I GGWCC 3 cut(s) 1091, 1959, 1996
BmeT110I CYCGRG 2 cut(s) 882, 1399
BmgBI CACGTC 3 cut(s) 244, 761, 1869
BmgT120I GGNCC 4 cut(s) 1091, 1706, 1959, 1996
BmiI GGNNCC 5 cut(s) 216, 856, 1092, 1260, 1960
BmrFI CCNGG 4 cut(s) 28, 74, 123, 905
BmrI ACTGGG 2 cut(s) 715, 1201
BmuI ACTGGG 2 cut(s) 715, 1201
BpiI GAAGAC 3 cut(s) 962, 1398, 1527
BplI GAGNNNNNCTC 2 cut(s) 1727, 1759
BpmI CTGGAG 2 cut(s) 77, 1314
Bpu10I CCTNAGC 1 cut(s) 1734
Bpu1102I GCTNAGC 2 cut(s) 51, 1409
BpuEI CTTGAG 3 cut(s) 243, 1731, 2150
BsaBI GATNNNNATC 2 cut(s) 1315, 1683
BsaJI CCNNGG 4 cut(s) 27, 366, 903, 1361
BsaWI WCCGGW 1 cut(s) 735
Bsc4I CCNNNNNNNGG 7 cut(s) 101, 182, 605, 1595, 1736, 1878, 2005
Bse1I ACTGG 3 cut(s) 721, 1196, 1718
Bse3DI GCAATG 2 cut(s) 1034, 2154
Bse8I GATNNNNATC 2 cut(s) 1315, 1683
BseBI CCWGG 4 cut(s) 28, 74, 123, 905
BseDI CCNNGG 4 cut(s) 27, 366, 903, 1361
BseGI GGATG 8 cut(s) 131, 172, 424, 802, 867, 1067, 1751, 1850
BseJI GATNNNNATC 2 cut(s) 1315, 1683
BseLI CCNNNNNNNGG 7 cut(s) 101, 182, 605, 1595, 1736, 1878, 2005
BseMI GCAATG 2 cut(s) 1034, 2154
BseNI ACTGG 3 cut(s) 721, 1196, 1718
BseRI GAGGAG 2 cut(s) 207, 900
BseXI GCAGC 7 cut(s) 634, 702, 1773, 1865, 1946, 1964, 2171
BseYI CCCAGC 1 cut(s) 1262
BsgI GTGCAG 3 cut(s) 1199, 1780, 1872
Bsh1285I CGRYCG 1 cut(s) 2106
BshFI GGCC 2 cut(s) 1707, 2153
BsiEI CGRYCG 1 cut(s) 2106
BsiHKAI GWGCWC 1 cut(s) 1410
BsiHKCI CYCGRG 2 cut(s) 882, 1399
BsiSI CCGG 1 cut(s) 736
BslI CCNNNNNNNGG 7 cut(s) 101, 182, 605, 1595, 1736, 1878, 2005
BsmAI GTCTC 3 cut(s) 170, 672, 1747
BsmI GAATGC 5 cut(s) 52, 204, 961, 1936, 2032
BsnI GGCC 2 cut(s) 1707, 2153
BsoBI CYCGRG 2 cut(s) 882, 1399
Bsp1286I GDGCHC 1 cut(s) 1410
Bsp1720I GCTNAGC 2 cut(s) 51, 1409
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 2009
BspANI GGCC 2 cut(s) 1707, 2153
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 5 cut(s) 216, 856, 1092, 1260, 1960
BspPI GGATC 7 cut(s) 422, 849, 862, 1509, 1645, 1721, 2107
BspQI GCTCTTC 2 cut(s) 1465, 1948
BsrDI GCAATG 2 cut(s) 1034, 2154
BsrI ACTGG 3 cut(s) 721, 1196, 1718
BssECI CCNNGG 4 cut(s) 27, 366, 903, 1361
BssT1I CCWWGG 2 cut(s) 366, 1361
Bst2UI CCWGG 4 cut(s) 28, 74, 123, 905
Bst4CI ACNGT 3 cut(s) 978, 1993, 2114
Bst6I CTCTTC 5 cut(s) 225, 1191, 1465, 1548, 1948
BstAPI GCANNNNNTGC 2 cut(s) 647, 2038
BstC8I GCNNGC 4 cut(s) 137, 386, 1041, 1939
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 8 cut(s) 131, 172, 424, 802, 867, 1067, 1751, 1850
BstMAI GTCTC 3 cut(s) 170, 672, 1747
BstMCI CGRYCG 1 cut(s) 2106
BstMWI GCNNNNNNNGC 5 cut(s) 470, 647, 1895, 2038, 2159
BstNI CCWGG 4 cut(s) 28, 74, 123, 905
BstNSI RCATGY 4 cut(s) 17, 139, 535, 969
BstSCI CCNGG 4 cut(s) 26, 72, 121, 903
BstSFI CTRYAG 1 cut(s) 1968
BstV1I GCAGC 7 cut(s) 634, 702, 1773, 1865, 1946, 1964, 2171
BstV2I GAAGAC 3 cut(s) 962, 1398, 1527
BstX2I RGATCY 3 cut(s) 854, 932, 1501
BstYI RGATCY 3 cut(s) 854, 932, 1501
BsuRI GGCC 2 cut(s) 1707, 2153
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 1291
BtrI CACGTC 3 cut(s) 244, 761, 1869
BtsCI GGATG 8 cut(s) 131, 172, 424, 802, 867, 1067, 1751, 1850
BtsIMutI CAGTG 3 cut(s) 288, 463, 1791
Cac8I GCNNGC 4 cut(s) 137, 386, 1041, 1939
CaiI CAGNNNCTG 2 cut(s) 1319, 1724
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 4 cut(s) 1091, 1706, 1959, 1996
Csp6I GTAC 1 cut(s) 2013
CviQI GTAC 1 cut(s) 2013
DraI TTTAAA 2 cut(s) 348, 1008
EaeI YGGCCR 1 cut(s) 2151
Eam1104I CTCTTC 5 cut(s) 225, 1191, 1465, 1548, 1948
EarI CTCTTC 5 cut(s) 225, 1191, 1465, 1548, 1948
Eco130I CCWWGG 2 cut(s) 366, 1361
Eco47I GGWCC 3 cut(s) 1091, 1959, 1996
Eco57I CTGAAG 3 cut(s) 495, 1446, 1974
Eco88I CYCGRG 2 cut(s) 882, 1399
EcoRI GAATTC 2 cut(s) 581, 1780
EcoRII CCWGG 4 cut(s) 26, 72, 121, 903
EcoT14I CCWWGG 2 cut(s) 366, 1361
EcoT22I ATGCAT 3 cut(s) 204, 400, 526
ErhI CCWWGG 2 cut(s) 366, 1361
FalI AAGNNNNNCTT 2 cut(s) 1215, 1247
FauI CCCGC 1 cut(s) 2002
FauNDI CATATG 1 cut(s) 1096
FbaI TGATCA 1 cut(s) 2044
Fnu4HI GCNGC 7 cut(s) 648, 691, 1762, 1854, 1935, 1978, 2160
FokI GGATG 8 cut(s) 138, 159, 431, 809, 854, 1054, 1738, 1857
Fsp4HI GCNGC 7 cut(s) 648, 691, 1762, 1854, 1935, 1978, 2160
FspBI CTAG 4 cut(s) 618, 1308, 1362, 1548
GluI GCNGC 7 cut(s) 648, 691, 1762, 1854, 1935, 1978, 2160
GsaI CCCAGC 1 cut(s) 1266
GsuI CTGGAG 2 cut(s) 77, 1314
HaeIII GGCC 2 cut(s) 1707, 2153
HapII CCGG 1 cut(s) 736
HincII GTYRAC 3 cut(s) 70, 241, 1477
HindII GTYRAC 3 cut(s) 70, 241, 1477
HindIII AAGCTT 1 cut(s) 1805
HinfI GANTC 9 cut(s) 147, 326, 362, 412, 677, 1145, 1316, 2023, 2063
HpaI GTTAAC 1 cut(s) 1477
HpaII CCGG 1 cut(s) 736
HphI GGTGA 4 cut(s) 491, 851, 870, 1871
Hpy166II GTNNAC 5 cut(s) 70, 241, 878, 1477, 1996
Hpy8I GTNNAC 5 cut(s) 70, 241, 878, 1477, 1996
HpyAV CCTTC 6 cut(s) 470, 950, 1018, 1697, 1856, 1949
HpyCH4III ACNGT 3 cut(s) 978, 1993, 2114
HpyCH4IV ACGT 5 cut(s) 85, 243, 760, 1031, 1868
HpyF10VI GCNNNNNNNGC 5 cut(s) 470, 647, 1895, 2038, 2159
HpySE526I ACGT 5 cut(s) 85, 243, 760, 1031, 1868
Ksp22I TGATCA 1 cut(s) 2044
KspAI GTTAAC 1 cut(s) 1477
LguI GCTCTTC 2 cut(s) 1465, 1948
LmnI GCTCC 3 cut(s) 220, 887, 2170
Lsp1109I GCAGC 7 cut(s) 634, 702, 1773, 1865, 1946, 1964, 2171
MaeI CTAG 4 cut(s) 618, 1308, 1362, 1548
MaeII ACGT 5 cut(s) 85, 243, 760, 1031, 1868
MaeIII GTNAC 5 cut(s) 185, 918, 978, 1786, 2146
MflI RGATCY 3 cut(s) 854, 932, 1501
MhlI GDGCHC 1 cut(s) 1410
MlyI GAGTC 3 cut(s) 421, 1139, 2072
MmeI TCCRAC 1 cut(s) 1615
Mph1103I ATGCAT 3 cut(s) 204, 400, 526
MseI TTAA 7 cut(s) 347, 408, 545, 743, 1007, 1169, 1476
MslI CAYNNNNRTG 5 cut(s) 124, 321, 449, 736, 1756
MspA1I CMGCKG 2 cut(s) 1733, 1856
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 4 cut(s) 28, 74, 123, 905
Mva1269I GAATGC 5 cut(s) 52, 204, 961, 1936, 2032
MvaI CCWGG 4 cut(s) 28, 74, 123, 905
MwoI GCNNNNNNNGC 5 cut(s) 470, 647, 1895, 2038, 2159
NcoI CCATGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 1096
NlaIV GGNNCC 5 cut(s) 216, 856, 1092, 1260, 1960
NmuCI GTSAC 1 cut(s) 1786
NsiI ATGCAT 3 cut(s) 204, 400, 526
NspI RCATGY 4 cut(s) 17, 139, 535, 969
OliI CACNNNNGTG 1 cut(s) 736
PaeI GCATGC 1 cut(s) 139
PaeR7I CTCGAG 2 cut(s) 882, 1399
PagI TCATGA 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 1465, 1948
PctI GAATGC 5 cut(s) 52, 204, 961, 1936, 2032
PfeI GAWTC 6 cut(s) 147, 326, 362, 677, 1316, 2023
PflMI CCANNNNNTGG 2 cut(s) 101, 182
PkrI GCNGC 7 cut(s) 649, 692, 1763, 1855, 1936, 1979, 2161
PleI GAGTC 3 cut(s) 420, 1139, 2071
PpsI GAGTC 3 cut(s) 420, 1139, 2071
Psp6I CCWGG 4 cut(s) 26, 72, 121, 903
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 4 cut(s) 26, 72, 121, 903
PspN4I GGNNCC 5 cut(s) 216, 856, 1092, 1260, 1960
PspPI GGNCC 4 cut(s) 1091, 1706, 1959, 1996
PspXI VCTCGAGB 1 cut(s) 882
PstNI CAGNNNCTG 2 cut(s) 1319, 1724
PsuI RGATCY 3 cut(s) 854, 932, 1501
PvuII CAGCTG 2 cut(s) 1733, 1856
RsaI GTAC 1 cut(s) 2014
RsaNI GTAC 1 cut(s) 2013
RseI CAYNNNNRTG 5 cut(s) 124, 321, 449, 736, 1756
SapI GCTCTTC 2 cut(s) 1465, 1948
SaqAI TTAA 7 cut(s) 347, 408, 545, 743, 1007, 1169, 1476
SatI GCNGC 7 cut(s) 648, 691, 1762, 1854, 1935, 1978, 2160
Sau96I GGNCC 4 cut(s) 1091, 1706, 1959, 1996
SchI GAGTC 3 cut(s) 421, 1139, 2072
ScrFI CCNGG 4 cut(s) 28, 74, 123, 905
SduI GDGCHC 1 cut(s) 1410
SfcI CTRYAG 1 cut(s) 1968
Sfr274I CTCGAG 2 cut(s) 882, 1399
SinI GGWCC 3 cut(s) 1091, 1959, 1996
SlaI CTCGAG 2 cut(s) 882, 1399
SmiMI CAYNNNNRTG 5 cut(s) 124, 321, 449, 736, 1756
SmlI CTYRAG 5 cut(s) 258, 882, 1399, 1746, 2165
SmoI CTYRAG 5 cut(s) 258, 882, 1399, 1746, 2165
SphI GCATGC 1 cut(s) 139
SsiI CCGC 1 cut(s) 2009
SspI AATATT 1 cut(s) 1000
SspMI CTAG 4 cut(s) 618, 1308, 1362, 1548
StyD4I CCNGG 4 cut(s) 26, 72, 121, 903
StyI CCWWGG 2 cut(s) 366, 1361
TaaI ACNGT 3 cut(s) 978, 1993, 2114
TaiI ACGT 5 cut(s) 88, 246, 763, 1034, 1871
TaqI TCGA 6 cut(s) 883, 1143, 1400, 2061, 2083, 2106
TaqII GACCGA 1 cut(s) 2092
TfiI GAWTC 6 cut(s) 147, 326, 362, 677, 1316, 2023
Tru1I TTAA 7 cut(s) 347, 408, 545, 743, 1007, 1169, 1476
Tru9I TTAA 7 cut(s) 347, 408, 545, 743, 1007, 1169, 1476
TscAI CASTG 3 cut(s) 295, 463, 1791
TseFI GTSAC 1 cut(s) 1786
TseI GCWGC 7 cut(s) 647, 690, 1761, 1853, 1934, 1977, 2159
Tsp45I GTSAC 1 cut(s) 1786
TspGWI ACGGA 1 cut(s) 1138
TspRI CASTG 3 cut(s) 295, 463, 1791
Van91I CCANNNNNTGG 2 cut(s) 101, 182
VpaK11BI GGWCC 3 cut(s) 1091, 1959, 1996
XapI RAATTY 6 cut(s) 296, 506, 581, 764, 1780, 1820
XbaI TCTAGA 1 cut(s) 1307
XceI RCATGY 4 cut(s) 17, 139, 535, 969
XhoI CTCGAG 2 cut(s) 882, 1399
XmaJI CCTAGG 1 cut(s) 1361
XspI CTAG 4 cut(s) 618, 1308, 1362, 1548
Zsp2I ATGCAT 3 cut(s) 204, 400, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.