Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016495

Physical Location & Seq

Genomic Coordinates Reverse (-)

2714480 .. 2716230

Gene Structure 1751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1037400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAGGTCTCATTTCTAGTGATTTATCATAGTATTACTTTGAAGACGAGCACGTACCTTTGGGAAATACTGTTCTCTATTTCACTCTGTCTCAGTGGATACATTCTGTTCTCACTATTGATTGGCAACATGCAGAATGGAGGATTAAGCTTAAGAGATACAGAGGAGTGGATGAGGCATCGGCAGTTACCTGAGGATTTGTGCGAATTTGATGAAGAATCACTATTGCGTTCATTGCCTTTAGATCTCTGCCATGAAATCCAGCGGCACTTATGCCTTTCCCTTGTTTGTCGTGTTCCTTTTTTCTCACAAATGGATGACCAGCTTCTCGATGCCATTTGCGAACGTCTTGTCTCATCCTTGAGTATTCAAGGCACATATATATTTCAAGAGGGTTATCCAGTAAATGAGATGATTTTTATCATTCGAGGGAAACTCGAGAGTTCCACAACCAACGGAGGGAGGTCCGGGTTCTTTAACTCCATCGCTCTTGGACCTGGTTACTTCTGCGGCGAGGAACTGCTGACATGGGCCTTGATGCCAAGCTCTAGCCTCAATTTCCCTTCTTCCACTAGAACAGTGAGAGCCCTTACTGAAGTTGAAGCTTCTGCACTTCGAGCGGAGGACCTTAAATTCGTTGCTGGCCAATTCAAACGCCTTCACAGCAAGAAACTACAGCATGCCTTTAGGTACTATTCCCACCAATGGAGGGCATGGGGTGGTTGCTTTATCCAAGCCGCTTGGAGAAGGTTTAGGAAACGAAAGATGGCAAGGGGCTTGGCTATGCAGGAGAGCTCCTACCATATGCAAAATCCAGGCCAAGAGGAAGATGGTTCCTACTACTATGACGAAGAACAAGCAGGTGGAAATTTTGAGGGTGATGCGAGTGGTGAGAGATCAGGGGAGAATGCAAGCAATTCGGGCCAAGGCCAACATCTTGGGGCCACATTTCTCGCTTCCAAGTTTGCTGCAAATACAAAACGAGGAATTGCACAGAAAGCTCAGGCGGTTGAAGCAGCTTCTCCCAGTTTGGACACGCCTCGGTTGTTAAAGCCAGATGAACCTGATTTCTCCGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016324 GO:0019725 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

361

Amino Acids

40.57

Weight (kDa)

5.9

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	125 - 211	3.1e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14870
fragaria_vesca	FvH4_6g50510
malus_domestica	MD09G1035800.v1.1 MD17G1037400.v1.1
prunus_persica	Prupe.3G282200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0170931
rosa_laevigata	RLG00000021993
rosa_multiflora	Rmu_sc0025148.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080970
rosa_rugosa	Rorug02G0552400
rosa_samantha	Rh2BG636000 Rh2CG604500 Rh2DG647600
rosa_wichuraiana	Rw2G051780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	851
Acc36I	ACCTGC	1 cut(s)	851
AccBSI	CCGCTC	1 cut(s)	620
AciI	CCGC	5 cut(s)	265, 510, 620, 738, 1007
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	3 cut(s)	206, 632, 868
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	2 cut(s)	56, 692
AfiI	CCNNNNNNNGG	3 cut(s)	459, 705, 709
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	43, 371, 389, 602, 652, 1013
AjnI	CCWGG	2 cut(s)	496, 814
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	7 cut(s)	150, 325, 546, 605, 795, 1001, 1019
AluI	AGCT	7 cut(s)	150, 325, 546, 605, 795, 1001, 1019
Alw21I	GWGCWC	2 cut(s)	53, 797
Alw26I	GTCTC	3 cut(s)	13, 95, 358
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	6 cut(s)	531, 643, 817, 922, 928, 942
ApeKI	GCWGC	2 cut(s)	968, 1016
ApoI	RAATTY	3 cut(s)	206, 632, 868
ArsI	GACNNNNNNTTYG	4 cut(s)	336, 368, 617, 649
AspS9I	GGNCC	6 cut(s)	465, 494, 531, 625, 922, 942
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	890, 902
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	3 cut(s)	465, 494, 625
AxyI	CCTNAGG	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	2 cut(s)	589, 797
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	53, 797
BbvI	GCAGC	2 cut(s)	955, 1028
BccI	CCATC	3 cut(s)	491, 760, 824
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	2 cut(s)	498, 816
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	3 cut(s)	13, 95, 358
BfaI	CTAG	3 cut(s)	17, 549, 573
BfmI	CTRYAG	1 cut(s)	674
BfrI	CTTAAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	851
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	5 cut(s)	266, 511, 738, 969, 1017
BlsI	GCNGC	5 cut(s)	267, 512, 739, 970, 1018
Bme1390I	CCNGG	3 cut(s)	469, 498, 816
Bme18I	GGWCC	3 cut(s)	465, 494, 625
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	6 cut(s)	465, 494, 531, 625, 922, 942
BmiI	GGNNCC	2 cut(s)	835, 943
BmrFI	CCNGG	3 cut(s)	469, 498, 816
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	4 cut(s)	187, 322, 528, 871
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
Bpu10I	CCTNAGC	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	382
BpuMI	CCSGG	1 cut(s)	469
BsaAI	YACGTR	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	925, 1040
Bsc4I	CCNNNNNNNGG	3 cut(s)	459, 705, 709
Bse1I	ACTGG	2 cut(s)	401, 1026
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	2 cut(s)	498, 816
BseDI	CCNNGG	2 cut(s)	925, 1040
BseGI	GGATG	3 cut(s)	177, 322, 356
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	3 cut(s)	459, 705, 709
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	3 cut(s)	106, 183, 1016
BseNI	ACTGG	2 cut(s)	401, 1026
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	955, 1028
BsgI	GTGCAG	1 cut(s)	594
BshFI	GGCC	6 cut(s)	533, 645, 819, 924, 930, 944
BsiHKAI	GWGCWC	2 cut(s)	53, 797
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	3 cut(s)	459, 705, 709
BsmAI	GTCTC	3 cut(s)	13, 95, 358
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	6 cut(s)	533, 645, 819, 924, 930, 944
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	3 cut(s)	53, 589, 797
Bsp143I	GATC	2 cut(s)	244, 896
BspACI	CCGC	5 cut(s)	265, 510, 620, 738, 1007
BspANI	GGCC	6 cut(s)	533, 645, 819, 924, 930, 944
BspCNI	CTCAG	3 cut(s)	105, 184, 1015
BspLI	GGNNCC	2 cut(s)	835, 943
BspMI	ACCTGC	1 cut(s)	851
BspTI	CTTAAG	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	401, 1026
BssECI	CCNNGG	2 cut(s)	925, 1040
BssMI	GATC	2 cut(s)	244, 896
BssT1I	CCWWGG	1 cut(s)	925
Bst2UI	CCWGG	2 cut(s)	498, 816
Bst4CI	ACNGT	2 cut(s)	72, 580
BstAFI	CTTAAG	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	643, 681, 913
BstDEI	CTNAG	3 cut(s)	92, 192, 1002
BstF5I	GGATG	3 cut(s)	177, 322, 356
BstKTI	GATC	2 cut(s)	247, 899
BstMAI	GTCTC	3 cut(s)	13, 95, 358
BstMBI	GATC	2 cut(s)	244, 896
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 617, 663, 921, 998, 1013
BstNI	CCWGG	2 cut(s)	498, 816
BstNSI	RCATGY	2 cut(s)	133, 683
BstSCI	CCNGG	3 cut(s)	467, 496, 814
BstSFI	CTRYAG	1 cut(s)	674
BstV1I	GCAGC	2 cut(s)	955, 1028
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	6 cut(s)	533, 645, 819, 924, 930, 944
BtgZI	GCGATG	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	177, 322, 356
BtsIMutI	CAGTG	2 cut(s)	100, 585
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	3 cut(s)	643, 681, 913
Cfr13I	GGNCC	6 cut(s)	465, 494, 531, 625, 922, 942
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	55, 691
CviAII	CATG	5 cut(s)	130, 254, 528, 680, 714
CviQI	GTAC	2 cut(s)	55, 691
DdeI	CTNAG	3 cut(s)	92, 192, 1002
DpnI	GATC	2 cut(s)	246, 898
DpnII	GATC	2 cut(s)	244, 896
EaeI	YGGCCR	1 cut(s)	643
Ecl136II	GAGCTC	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	925
Eco24I	GRGCYC	2 cut(s)	589, 797
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	3 cut(s)	465, 494, 625
Eco53kI	GAGCTC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	615
Eco81I	CCTNAGG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	496, 814
EcoT14I	CCWWGG	1 cut(s)	925
EcoT38I	GRGCYC	2 cut(s)	589, 797
ErhI	CCWWGG	1 cut(s)	925
FaeI	CATG	5 cut(s)	133, 257, 531, 683, 717
FatI	CATG	5 cut(s)	129, 253, 527, 679, 713
FauNDI	CATATG	1 cut(s)	804
Fnu4HI	GCNGC	5 cut(s)	266, 511, 738, 969, 1017
FokI	GGATG	3 cut(s)	184, 329, 343
FriOI	GRGCYC	2 cut(s)	589, 797
Fsp4HI	GCNGC	5 cut(s)	266, 511, 738, 969, 1017
FspBI	CTAG	3 cut(s)	17, 549, 573
GluI	GCNGC	5 cut(s)	266, 511, 738, 969, 1017
HaeIII	GGCC	6 cut(s)	533, 645, 819, 924, 930, 944
HapII	CCGG	1 cut(s)	468
Hin1II	CATG	5 cut(s)	133, 257, 531, 683, 717
HindIII	AAGCTT	2 cut(s)	148, 603
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	890, 902
Hpy188III	TCNNGA	3 cut(s)	329, 389, 439
HpyAV	CCTTC	3 cut(s)	573, 668, 741
HpyCH4III	ACNGT	2 cut(s)	72, 580
HpyCH4IV	ACGT	2 cut(s)	53, 346
HpyCH4V	TGCA	7 cut(s)	133, 611, 787, 808, 911, 971, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 617, 663, 921, 998, 1013
HpyF3I	CTNAG	3 cut(s)	92, 192, 1002
HpySE526I	ACGT	2 cut(s)	53, 346
Hsp92II	CATG	5 cut(s)	133, 257, 531, 683, 717
Kzo9I	GATC	2 cut(s)	244, 896
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	2 cut(s)	955, 1028
LweI	GCATC	4 cut(s)	187, 322, 528, 871
MabI	ACCWGGT	1 cut(s)	496
MaeI	CTAG	3 cut(s)	17, 549, 573
MaeII	ACGT	2 cut(s)	53, 346
MaeIII	GTNAC	2 cut(s)	186, 500
MalI	GATC	2 cut(s)	246, 898
MbiI	CCGCTC	1 cut(s)	620
MboI	GATC	2 cut(s)	244, 896
MboII	GAAGA	5 cut(s)	55, 227, 558, 839, 863
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	3 cut(s)	53, 589, 797
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	7 cut(s)	206, 556, 632, 647, 868, 916, 987
MluNI	TGGCCA	1 cut(s)	645
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	5 cut(s)	146, 152, 477, 630, 1049
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	265
MspCI	CTTAAG	1 cut(s)	151
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	469, 498, 816
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	2 cut(s)	498, 816
MwoI	GCNNNNNNNGC	6 cut(s)	235, 617, 663, 921, 998, 1013
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	2 cut(s)	244, 896
NlaIII	CATG	5 cut(s)	133, 257, 531, 683, 717
NlaIV	GGNNCC	2 cut(s)	835, 943
NspI	RCATGY	2 cut(s)	133, 683
PaeI	GCATGC	1 cut(s)	683
PaeR7I	CTCGAG	1 cut(s)	437
PaqCI	CACCTGC	1 cut(s)	851
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	5 cut(s)	267, 512, 739, 970, 1018
Ppu21I	YACGTR	1 cut(s)	54
PpuMI	RGGWCCY	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	2 cut(s)	496, 814
PspGI	CCWGG	2 cut(s)	496, 814
PspN4I	GGNNCC	2 cut(s)	835, 943
PspPI	GGNCC	6 cut(s)	465, 494, 531, 625, 922, 942
PspPPI	RGGWCCY	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	56, 692
RsaNI	GTAC	2 cut(s)	55, 691
SacI	GAGCTC	1 cut(s)	797
SaqAI	TTAA	5 cut(s)	146, 152, 477, 630, 1049
SatI	GCNGC	5 cut(s)	266, 511, 738, 969, 1017
Sau3AI	GATC	2 cut(s)	244, 896
Sau96I	GGNCC	6 cut(s)	465, 494, 531, 625, 922, 942
ScrFI	CCNGG	3 cut(s)	469, 498, 816
SduI	GDGCHC	3 cut(s)	53, 589, 797
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	4 cut(s)	187, 322, 528, 871
SfcI	CTRYAG	1 cut(s)	674
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	3 cut(s)	465, 494, 625
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	151, 361, 437
SmoI	CTYRAG	3 cut(s)	151, 361, 437
SphI	GCATGC	1 cut(s)	683
Sse9I	AATT	7 cut(s)	206, 556, 632, 647, 868, 916, 987
SsiI	CCGC	5 cut(s)	265, 510, 620, 738, 1007
SspMI	CTAG	3 cut(s)	17, 549, 573
SstI	GAGCTC	1 cut(s)	797
StyD4I	CCNGG	3 cut(s)	467, 496, 814
StyI	CCWWGG	1 cut(s)	925
TaaI	ACNGT	2 cut(s)	72, 580
TaiI	ACGT	2 cut(s)	56, 349
TaqI	TCGA	4 cut(s)	330, 427, 438, 616
TasI	AATT	7 cut(s)	206, 556, 632, 647, 868, 916, 987
TauI	GCSGC	3 cut(s)	268, 513, 740
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	5 cut(s)	146, 152, 477, 630, 1049
Tru9I	TTAA	5 cut(s)	146, 152, 477, 630, 1049
TscAI	CASTG	2 cut(s)	100, 585
TseI	GCWGC	2 cut(s)	968, 1016
TspDTI	ATGAA	5 cut(s)	17, 222, 228, 270, 1074
TspGWI	ACGGA	2 cut(s)	471, 1063
TspRI	CASTG	2 cut(s)	100, 585
Vha464I	CTTAAG	1 cut(s)	151
VpaK11BI	GGWCC	3 cut(s)	465, 494, 625
XapI	RAATTY	3 cut(s)	206, 632, 868
XceI	RCATGY	2 cut(s)	133, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	3 cut(s)	17, 549, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.