Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3947247 .. 3955478

Gene Structure 8232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGCTCATGTGCGGGAGGCGGCCGAACGTGGATCGGGTTGGTGGGCTGCTAGGTGGGATTGATGTTGTTTGGATCTATGACGCCGTAGTGGGACCGATGGCGAAGCTACCACGGGTAGGTGGGAGATCGAGAGATGGGAGGCGGAAGGACAAGCCGGGCCGGAACCGATCGGGATTGGAGGTCGGTCCGGTTTGGTTCGATATCCGGAGTGAGGCCGTGCGGGGCGGGGCGGTGGAGTGGGTGGGTAGTCTTGGTCGATGGTTCGTCCGCGGAGATGGCTCGCAGATGGTCGAGGTCCGACATCGGTGGCGGAGCGGCGCGTATAGTGGCTTGTTGGTACAGTGCCTTCCGGACCGGGCTAACGAGGCGGGGCTTGGTCGCCTTAGATCTCCGGGCCTGGGCTTGTTATTTACTTATAGTTGGTGGTTTTTGACCAATCACCACGCCGGTCAAATTCCGCCCCTCCAGAACCCTAGCGGCGACAGCGCCACCTCGGCCGCCGTAGTAGACGAGCACTCGCTCCACATTCTATGGCGCCACAAGATTCTCGACCCCGACTCCGACCTGGTATCCCTCTGGCACCACATCTTCCTCGTCATCTGCATCGCCGCGCTCTTCATCGACCCTCTCTACTTCTACCTCCCCTTCGTCGGCGGCGACGGCTGCCTCTCCACCGACCACCGCCTCGCCGTCATCGTCACCTTCTTCCGCTCCATCGCCGACCTCTTCTACCTCTTCCACATGATCGTCAAGTTCCGCACCGCATTCATCGCCCCCAGCTCTAGGGTTTTCGGCCGCGGCGATCTCGTCATGGACGGCAGACAGATCGCCATGCGGTATCTCAAGTCCGACTTCGTGATATTTGGAGCCGTTTGGTATCTGTGTGCCATAGGGCGGCAATTTGAATGTTGGAAAACGGAGTGTAGTGAAGAGAATACAAAAGTTGTGACTTGCCTCTATAGTTTCCTGGATTGCAAGAGTTTGGACCTACCAGAACGGGAATCTTGGGCAAACGCCACCAAAGTAATAAAAAAGTGTGATGCCTCAGATGAAAAGGCTGATTTTAAGTTTGGAATCTTTGACAAAGCATTTAAGACTGAGGCTGCAAAGACGAACTTTTTTGAGAACTCATACGGGCAGACTTTGATGACGAGCACATATCTTGGCGAGACATTGTTTTCCATTGTCTTGTGCATTTCTGGTTTGATTTTGTTCTCACTATTGATTGGCAACATGCAGACTTATCTGCAATCAATGTCAATAAAAATCGAAGAATGGAGAATTAAGCAAAGAGATACTGATGAGTGGATGAGGCATCGCCAGTTACCTGAACCCTTGCAAGAACGTGTTCGTAGATTTATGCAATACAAATGGTTTGCAACACGAGGAGTTGATGAAGAATCCATCTTGCATTCATTACCCATCGACCTCTGCCATGAAATCCAGCAGCACTTATGCCTTTCACTTGTTCGTCGTGTCCCTTTTTTCTCACAAATGGATGACCAGCTTCTTGATGCCATATGTGAGCGTCTTGTGTCATCCTTGACTATCAAAGGCACATATATAGTTCAAGAAGGCGACCCAGTAAATGAGATGCTCTTTATTATCAGAGGGAAACTTGAGAGCTCCACAACCAATGGAGGGAGGACTGGCTTCTTTAACTCCATCAATCTAGGACCTGGTGACTTCTGTGGTGAGGAACTATTGACATGGGCATTGATGCCAAGCTCTAGCGTTAGCATGCCTTCTTCCACTCGGACTGTGAGAGCCCTCACTGAAGTTGAAGCTTTTGCGCTTCGAGCTGAGGACCTTAAGTTTGTTGCAAGTCAGTTCAAACGCCTTCACAGCAAGAAACTACAGCATGCCTTTAGGTACTATTCTCACCAATGGAGGACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGAAGGTTTAAGAAGAGGAAGATGGCAAGGGACTTGACTATGCAGGAGGGCTTATACTATTTGCATGTACCTGGCCAAGAGGAAGAGGGTTACTACTACGACAACGAAGAACAAACAGATCTTGGAAACTATGACGGTGAGAGTGGTGATAGGTCTTCGACAGGGGAGAAGTTTAGCACTTCCATGAATCTTGGGGCCACATTTCTGGCTTCTAAATTTGCTGCAAATACAAGAAGAGGGATTGTGCAGAAAGCTCAGCTGGTTGATCCTGATTCAACTAGTTTGCAGATGCCTCGGATGTTTAAGCCAGATGAGCCTGATTTTTCTGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016324 GO:0019725 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

753

Amino Acids

85.79

Weight (kDa)

7.83

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	518 - 607	1.4e-09	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14870
fragaria_vesca	FvH4_6g50510
malus_domestica	MD09G1035800.v1.1 MD17G1037400.v1.1
prunus_persica	Prupe.3G282200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0170931
rosa_laevigata	RLG00000021993
rosa_multiflora	Rmu_sc0025148.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080970
rosa_rugosa	Rorug02G0552400
rosa_samantha	Rh2BG636000 Rh2CG604500 Rh2DG647600
rosa_wichuraiana	Rw2G051780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	534, 579
AccBSI	CCGCTC	2 cut(s)	315, 711
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	4 cut(s)	270, 320, 611, 798
AccIII	TCCGGA	2 cut(s)	204, 349
AclWI	GGATC	3 cut(s)	39, 80, 2186
AcoI	YGGCCR	4 cut(s)	20, 495, 793, 1999
AcsI	RAATTY	2 cut(s)	453, 2141
AcuI	CTGAAG	1 cut(s)	1797
AcyI	GRCGYC	2 cut(s)	81, 535
AfaI	GTAC	3 cut(s)	339, 1874, 1995
AfiI	CCNNNNNNNGG	7 cut(s)	116, 211, 398, 650, 783, 894, 1641
AflII	CTTAAG	1 cut(s)	1811
AflIII	ACRYGT	1 cut(s)	1345
AgsI	TTSAA	5 cut(s)	905, 1571, 1784, 1834, 2202
AhlI	ACTAGT	1 cut(s)	2204
AjnI	CCWGG	5 cut(s)	396, 564, 966, 1678, 1996
Alw21I	GWGCWC	3 cut(s)	516, 1157, 1628
Alw26I	GTCTC	1 cut(s)	1163
AlwI	GGATC	3 cut(s)	39, 80, 2186
Aor13HI	TCCGGA	2 cut(s)	204, 349
AoxI	GGCC	8 cut(s)	20, 157, 213, 394, 495, 793, 1999, 2121
ApeKI	GCWGC	6 cut(s)	46, 663, 1103, 1447, 1919, 2147
ApoI	RAATTY	2 cut(s)	453, 2141
ArsI	GACNNNNNNTTYG	2 cut(s)	1799, 1831
Asp700I	GAANNNNTTC	1 cut(s)	1347
AspLEI	GCGC	5 cut(s)	320, 488, 537, 613, 1795
AsuC2I	CCSGG	3 cut(s)	156, 356, 393
AsuHPI	GGTGA	7 cut(s)	431, 691, 1694, 1706, 1874, 2075, 2084
AvaII	GGWCC	7 cut(s)	92, 185, 295, 352, 985, 1676, 1807
BalI	TGGCCA	1 cut(s)	2001
BanI	GGYRCC	2 cut(s)	534, 579
BanII	GRGCYC	2 cut(s)	1628, 1771
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BauI	CACGAG	1 cut(s)	1383
BbsI	GAAGAC	1 cut(s)	2073
Bbv12I	GWGCWC	3 cut(s)	516, 1157, 1628
BbvCI	CCTCAGC	1 cut(s)	1803
BbvI	GCAGC	6 cut(s)	33, 650, 1090, 1459, 1906, 2134
BceAI	ACGGC	7 cut(s)	68, 200, 485, 674, 676, 832, 854
BcgI	CGANNNNNNTGC	4 cut(s)	808, 842, 2201, 2235
BciT130I	CCWGG	5 cut(s)	398, 566, 968, 1680, 1998
BciVI	GTATCC	1 cut(s)	580
BcnI	CCSGG	3 cut(s)	156, 356, 393
BcoDI	GTCTC	1 cut(s)	1163
BcuI	ACTAGT	1 cut(s)	2204
BfaI	CTAG	6 cut(s)	50, 474, 783, 1673, 1731, 2205
BfmI	CTRYAG	3 cut(s)	958, 1856, 2253
BfoI	RGCGCY	2 cut(s)	489, 538
BfrI	CTTAAG	1 cut(s)	1811
BfuI	GTATCC	1 cut(s)	580
BglI	GCCNNNNNGGC	1 cut(s)	494
BglII	AGATCT	2 cut(s)	386, 2044
BlpI	GCTNAGC	1 cut(s)	2181
Bme1390I	CCNGG	8 cut(s)	156, 356, 393, 398, 566, 968, 1680, 1998
Bme18I	GGWCC	7 cut(s)	92, 185, 295, 352, 985, 1676, 1807
BmiI	GGNNCC	6 cut(s)	93, 164, 536, 581, 868, 2122
BmrFI	CCNGG	8 cut(s)	156, 356, 393, 398, 566, 968, 1680, 1998
BmrI	ACTGGG	1 cut(s)	1577
BmsI	GCATC	7 cut(s)	612, 1030, 1324, 1504, 1584, 1710, 2205
BmuI	ACTGGG	1 cut(s)	1577
BpiI	GAAGAC	1 cut(s)	2073
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	1803
Bpu1102I	GCTNAGC	1 cut(s)	2181
BpuEI	CTTGAG	2 cut(s)	827, 1640
BpuMI	CCSGG	3 cut(s)	156, 356, 393
BsaHI	GRCGYC	2 cut(s)	81, 535
BsaJI	CCNNGG	6 cut(s)	110, 268, 397, 492, 796, 2219
BsaWI	WCCGGW	3 cut(s)	187, 204, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	7 cut(s)	116, 211, 398, 650, 783, 894, 1641
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	3 cut(s)	1321, 1583, 1654
BseAI	TCCGGA	2 cut(s)	204, 349
BseBI	CCWGG	5 cut(s)	398, 566, 968, 1680, 1998
BseDI	CCNNGG	6 cut(s)	110, 268, 397, 492, 796, 2219
BseGI	GGATG	4 cut(s)	1314, 1504, 1538, 2229
BseLI	CCNNNNNNNGG	7 cut(s)	116, 211, 398, 650, 783, 894, 1641
BseMII	CTCAG	4 cut(s)	1059, 1089, 1794, 2195
BseNI	ACTGG	3 cut(s)	1321, 1583, 1654
BseRI	GAGGAG	1 cut(s)	1401
BseX3I	CGGCCG	3 cut(s)	20, 495, 793
BseXI	GCAGC	6 cut(s)	33, 650, 1090, 1459, 1906, 2134
BseYI	CCCAGC	1 cut(s)	776
BsgI	GTGCAG	1 cut(s)	2192
Bsh1236I	CGCG	4 cut(s)	270, 320, 611, 798
Bsh1285I	CGRYCG	4 cut(s)	23, 170, 498, 796
BshFI	GGCC	8 cut(s)	22, 159, 215, 396, 497, 795, 2001, 2123
BshNI	GGYRCC	2 cut(s)	534, 579
BsiEI	CGRYCG	4 cut(s)	23, 170, 498, 796
BsiHKAI	GWGCWC	3 cut(s)	516, 1157, 1628
BsiSI	CCGG	8 cut(s)	155, 160, 188, 205, 350, 355, 392, 447
BslFI	GGGAC	3 cut(s)	105, 1463, 1970
BslI	CCNNNNNNNGG	7 cut(s)	116, 211, 398, 650, 783, 894, 1641
BsmAI	GTCTC	1 cut(s)	1163
BsmFI	GGGAC	3 cut(s)	105, 1463, 1970
BsmI	GAATGC	2 cut(s)	764, 1411
BsnI	GGCC	8 cut(s)	22, 159, 215, 396, 497, 795, 2001, 2123
Bsp1286I	GDGCHC	4 cut(s)	516, 1157, 1628, 1771
Bsp13I	TCCGGA	2 cut(s)	204, 349
Bsp1720I	GCTNAGC	1 cut(s)	2181
BspANI	GGCC	8 cut(s)	22, 159, 215, 396, 497, 795, 2001, 2123
BspCNI	CTCAG	4 cut(s)	1058, 1090, 1795, 2194
BspEI	TCCGGA	2 cut(s)	204, 349
BspFNI	CGCG	4 cut(s)	270, 320, 611, 798
BspLI	GGNNCC	6 cut(s)	93, 164, 536, 581, 868, 2122
BspPI	GGATC	3 cut(s)	39, 80, 2186
BspQI	GCTCTTC	1 cut(s)	620
BspT107I	GGYRCC	2 cut(s)	534, 579
BspTI	CTTAAG	1 cut(s)	1811
BsrBI	CCGCTC	2 cut(s)	315, 711
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	1321, 1583, 1654
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	6 cut(s)	110, 268, 397, 492, 796, 2219
BssNI	GRCGYC	2 cut(s)	81, 535
BssSI	CACGAG	1 cut(s)	1383
Bst2BI	CACGAG	1 cut(s)	1383
Bst2UI	CCWGG	5 cut(s)	398, 566, 968, 1680, 1998
Bst4CI	ACNGT	3 cut(s)	342, 1762, 2063
Bst6I	CTCTTC	7 cut(s)	620, 731, 740, 924, 1934, 2004, 2155
BstACI	GRCGYC	2 cut(s)	81, 535
BstAFI	CTTAAG	1 cut(s)	1811
BstC8I	GCNNGC	4 cut(s)	281, 1742, 1863, 1906
BstDEI	CTNAG	5 cut(s)	383, 1045, 1098, 1803, 2181
BstDSI	CCRYGG	3 cut(s)	110, 268, 796
BstF5I	GGATG	4 cut(s)	1314, 1504, 1538, 2229
BstFNI	CGCG	4 cut(s)	270, 320, 611, 798
BstH2I	RGCGCY	2 cut(s)	489, 538
BstHHI	GCGC	5 cut(s)	320, 488, 537, 613, 1795
BstMAI	GTCTC	1 cut(s)	1163
BstMCI	CGRYCG	4 cut(s)	23, 170, 498, 796
BstNI	CCWGG	5 cut(s)	398, 566, 968, 1680, 1998
BstNSI	RCATGY	4 cut(s)	1237, 1744, 1865, 1994
BstSCI	CCNGG	8 cut(s)	154, 354, 391, 396, 564, 966, 1678, 1996
BstSFI	CTRYAG	3 cut(s)	958, 1856, 2253
BstUI	CGCG	4 cut(s)	270, 320, 611, 798
BstV1I	GCAGC	6 cut(s)	33, 650, 1090, 1459, 1906, 2134
BstV2I	GAAGAC	1 cut(s)	2073
BstX2I	RGATCY	3 cut(s)	72, 386, 2044
BstXI	CCANNNNNNTGG	1 cut(s)	2131
BstYI	RGATCY	3 cut(s)	72, 386, 2044
BstZI	CGGCCG	3 cut(s)	20, 495, 793
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	8 cut(s)	22, 159, 215, 396, 497, 795, 2001, 2123
BtgI	CCRYGG	3 cut(s)	110, 268, 796
BtgZI	GCGATG	4 cut(s)	589, 700, 754, 1301
BtsCI	GGATG	4 cut(s)	1314, 1504, 1538, 2229
BtsIMutI	CAGTG	2 cut(s)	347, 1773
Cac8I	GCNNGC	4 cut(s)	281, 1742, 1863, 1906
CfoI	GCGC	5 cut(s)	320, 488, 537, 613, 1795
Cfr10I	RCCGGY	1 cut(s)	446
Cfr42I	CCGCGG	2 cut(s)	271, 799
CpoI	CGGWCCG	2 cut(s)	185, 352
CseI	GACGC	2 cut(s)	89, 1517
CsiI	ACCWGGT	2 cut(s)	564, 1678
Csp6I	GTAC	3 cut(s)	338, 1873, 1994
CspI	CGGWCCG	2 cut(s)	185, 352
CviQI	GTAC	3 cut(s)	338, 1873, 1994
DdeI	CTNAG	5 cut(s)	383, 1045, 1098, 1803, 2181
DinI	GGCGCC	1 cut(s)	536
EaeI	YGGCCR	4 cut(s)	20, 495, 793, 1999
EagI	CGGCCG	3 cut(s)	20, 495, 793
Eam1104I	CTCTTC	7 cut(s)	620, 731, 740, 924, 1934, 2004, 2155
EarI	CTCTTC	7 cut(s)	620, 731, 740, 924, 1934, 2004, 2155
EciI	GGCGGA	3 cut(s)	157, 325, 447
Ecl136II	GAGCTC	1 cut(s)	1626
EclXI	CGGCCG	3 cut(s)	20, 495, 793
Eco24I	GRGCYC	2 cut(s)	1628, 1771
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	7 cut(s)	92, 185, 295, 352, 985, 1676, 1807
Eco52I	CGGCCG	3 cut(s)	20, 495, 793
Eco53kI	GAGCTC	1 cut(s)	1626
Eco57I	CTGAAG	1 cut(s)	1797
EcoICRI	GAGCTC	1 cut(s)	1626
EcoO109I	RGGNCCY	2 cut(s)	1676, 1807
EcoRII	CCWGG	5 cut(s)	396, 564, 966, 1678, 1996
EcoRV	GATATC	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	1628, 1771
EgeI	GGCGCC	1 cut(s)	536
EheI	GGCGCC	1 cut(s)	536
FalI	AAGNNNNNCTT	4 cut(s)	836, 868, 1100, 1132
FaqI	GGGAC	3 cut(s)	105, 1463, 1970
FauI	CCCGC	4 cut(s)	5, 213, 218, 361
FauNDI	CATATG	1 cut(s)	1520
FblI	GTMKAC	1 cut(s)	507
FokI	GGATG	4 cut(s)	1321, 1511, 1525, 2236
FriOI	GRGCYC	2 cut(s)	1628, 1771
FspBI	CTAG	6 cut(s)	50, 474, 783, 1673, 1731, 2205
GlaI	GCGC	5 cut(s)	319, 487, 536, 612, 1794
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	449
HaeII	RGCGCY	2 cut(s)	489, 538
HaeIII	GGCC	8 cut(s)	22, 159, 215, 396, 497, 795, 2001, 2123
HapII	CCGG	8 cut(s)	155, 160, 188, 205, 350, 355, 392, 447
HgaI	GACGC	2 cut(s)	89, 1517
HhaI	GCGC	5 cut(s)	320, 488, 537, 613, 1795
Hin1I	GRCGYC	2 cut(s)	81, 535
Hin6I	GCGC	5 cut(s)	318, 486, 535, 611, 1793
HinP1I	GCGC	5 cut(s)	318, 486, 535, 611, 1793
HindIII	AAGCTT	1 cut(s)	1785
HinfI	GANTC	7 cut(s)	544, 557, 1001, 1074, 1400, 2113, 2198
HpaII	CCGG	8 cut(s)	155, 160, 188, 205, 350, 355, 392, 447
HphI	GGTGA	7 cut(s)	431, 691, 1694, 1706, 1874, 2075, 2084
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	7 cut(s)	299, 562, 850, 1048, 1610, 1758, 2223
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	3 cut(s)	653, 662, 1476
HpyAV	CCTTC	8 cut(s)	139, 356, 655, 712, 1568, 1755, 1850, 1923
HpyCH4III	ACNGT	3 cut(s)	342, 1762, 2063
HpyCH4IV	ACGT	2 cut(s)	27, 1345
HpyF3I	CTNAG	5 cut(s)	383, 1045, 1098, 1803, 2181
HpySE526I	ACGT	2 cut(s)	27, 1345
Hsp92I	GRCGYC	2 cut(s)	81, 535
HspAI	GCGC	5 cut(s)	318, 486, 535, 611, 1793
KasI	GGCGCC	1 cut(s)	534
Kpn2I	TCCGGA	2 cut(s)	204, 349
KspI	CCGCGG	2 cut(s)	271, 799
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	5 cut(s)	312, 525, 716, 866, 1631
Lsp1109I	GCAGC	6 cut(s)	33, 650, 1090, 1459, 1906, 2134
LweI	GCATC	7 cut(s)	612, 1030, 1324, 1504, 1584, 1710, 2205
MabI	ACCWGGT	2 cut(s)	564, 1678
MaeI	CTAG	6 cut(s)	50, 474, 783, 1673, 1731, 2205
MaeII	ACGT	2 cut(s)	27, 1345
MaeIII	GTNAC	5 cut(s)	697, 946, 1323, 1682, 2015
MbiI	CCGCTC	2 cut(s)	315, 711
MflI	RGATCY	3 cut(s)	72, 386, 2044
MhlI	GDGCHC	4 cut(s)	516, 1157, 1628, 1771
MlsI	TGGCCA	1 cut(s)	2001
MluCI	AATT	4 cut(s)	453, 899, 1281, 2141
MluNI	TGGCCA	1 cut(s)	2001
Mly113I	GGCGCC	1 cut(s)	535
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	4 cut(s)	322, 585, 873, 890
Mox20I	TGGCCA	1 cut(s)	2001
MroI	TCCGGA	2 cut(s)	204, 349
MroXI	GAANNNNTTC	1 cut(s)	1347
MscI	TGGCCA	1 cut(s)	2001
MseI	TTAA	7 cut(s)	1065, 1092, 1284, 1659, 1812, 1935, 2229
MslI	CAYNNNNRTG	1 cut(s)	2108
Msp20I	TGGCCA	1 cut(s)	2001
MspA1I	CMGCKG	3 cut(s)	270, 798, 2185
MspCI	CTTAAG	1 cut(s)	1811
MspI	CCGG	8 cut(s)	155, 160, 188, 205, 350, 355, 392, 447
MspR9I	CCNGG	8 cut(s)	156, 356, 393, 398, 566, 968, 1680, 1998
Mva1269I	GAATGC	2 cut(s)	764, 1411
MvaI	CCWGG	5 cut(s)	398, 566, 968, 1680, 1998
MvnI	CGCG	4 cut(s)	270, 320, 611, 798
NarI	GGCGCC	1 cut(s)	535
NciI	CCSGG	3 cut(s)	156, 356, 393
NdeI	CATATG	1 cut(s)	1520
NlaIV	GGNNCC	6 cut(s)	93, 164, 536, 581, 868, 2122
NmeAIII	GCCGAG	1 cut(s)	473
NmuCI	GTSAC	3 cut(s)	697, 946, 1682
NspI	RCATGY	4 cut(s)	1237, 1744, 1865, 1994
PaeI	GCATGC	2 cut(s)	1744, 1865
PciSI	GCTCTTC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	3 cut(s)	654, 693, 798
PctI	GAATGC	2 cut(s)	764, 1411
PdmI	GAANNNNTTC	1 cut(s)	1347
PfeI	GAWTC	6 cut(s)	544, 1001, 1074, 1400, 2113, 2198
PfoI	TCCNGGA	1 cut(s)	966
Ple19I	CGATCG	1 cut(s)	170
PleI	GAGTC	1 cut(s)	551
PluTI	GGCGCC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	551
PpuMI	RGGWCCY	2 cut(s)	1676, 1807
Psp124BI	GAGCTC	1 cut(s)	1628
Psp5II	RGGWCCY	2 cut(s)	1676, 1807
Psp6I	CCWGG	5 cut(s)	396, 564, 966, 1678, 1996
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	5 cut(s)	396, 564, 966, 1678, 1996
PspN4I	GGNNCC	6 cut(s)	93, 164, 536, 581, 868, 2122
PspPPI	RGGWCCY	2 cut(s)	1676, 1807
PsuI	RGATCY	3 cut(s)	72, 386, 2044
PvuI	CGATCG	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	2185
RsaI	GTAC	3 cut(s)	339, 1874, 1995
RsaNI	GTAC	3 cut(s)	338, 1873, 1994
RseI	CAYNNNNRTG	1 cut(s)	2108
Rsr2I	CGGWCCG	2 cut(s)	185, 352
RsrII	CGGWCCG	2 cut(s)	185, 352
SacI	GAGCTC	1 cut(s)	1628
SacII	CCGCGG	2 cut(s)	271, 799
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	7 cut(s)	1065, 1092, 1284, 1659, 1812, 1935, 2229
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	8 cut(s)	156, 356, 393, 398, 566, 968, 1680, 1998
SduI	GDGCHC	4 cut(s)	516, 1157, 1628, 1771
SexAI	ACCWGGT	2 cut(s)	564, 1678
SfaNI	GCATC	7 cut(s)	612, 1030, 1324, 1504, 1584, 1710, 2205
SfcI	CTRYAG	3 cut(s)	958, 1856, 2253
SfoI	GGCGCC	1 cut(s)	536
Sfr303I	CCGCGG	2 cut(s)	271, 799
SgrBI	CCGCGG	2 cut(s)	271, 799
SinI	GGWCC	7 cut(s)	92, 185, 295, 352, 985, 1676, 1807
SmiMI	CAYNNNNRTG	1 cut(s)	2108
SmlI	CTYRAG	3 cut(s)	842, 1619, 1811
SmoI	CTYRAG	3 cut(s)	842, 1619, 1811
SpeI	ACTAGT	1 cut(s)	2204
SphI	GCATGC	2 cut(s)	1744, 1865
Sse9I	AATT	4 cut(s)	453, 899, 1281, 2141
SspDI	GGCGCC	1 cut(s)	534
SspMI	CTAG	6 cut(s)	50, 474, 783, 1673, 1731, 2205
SstI	GAGCTC	1 cut(s)	1628
StyD4I	CCNGG	8 cut(s)	154, 354, 391, 396, 564, 966, 1678, 1996
TaaI	ACNGT	3 cut(s)	342, 1762, 2063
TaiI	ACGT	2 cut(s)	30, 1348
TaqII	GACCGA	2 cut(s)	109, 173
TasI	AATT	4 cut(s)	453, 899, 1281, 2141
TauI	GCSGC	9 cut(s)	22, 318, 480, 500, 611, 657, 798, 801, 898
TfiI	GAWTC	6 cut(s)	544, 1001, 1074, 1400, 2113, 2198
Tru1I	TTAA	7 cut(s)	1065, 1092, 1284, 1659, 1812, 1935, 2229
Tru9I	TTAA	7 cut(s)	1065, 1092, 1284, 1659, 1812, 1935, 2229
TscAI	CASTG	2 cut(s)	347, 1780
TseFI	GTSAC	3 cut(s)	697, 946, 1682
TseI	GCWGC	6 cut(s)	46, 663, 1103, 1447, 1919, 2147
Tsp45I	GTSAC	3 cut(s)	697, 946, 1682
TspDTI	ATGAA	8 cut(s)	607, 757, 1065, 1404, 1410, 1452, 1900, 2126
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	2 cut(s)	347, 1780
Vha464I	CTTAAG	1 cut(s)	1811
VpaK11BI	GGWCC	7 cut(s)	92, 185, 295, 352, 985, 1676, 1807
XapI	RAATTY	2 cut(s)	453, 2141
XceI	RCATGY	4 cut(s)	1237, 1744, 1865, 1994
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	1347
XspI	CTAG	6 cut(s)	50, 474, 783, 1673, 1731, 2205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.