Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025148.1

Orthogroup ID

OG0016495

Physical Location & Seq

Genomic Coordinates Reverse (-)

2602 .. 3654

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025148.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgaggcatcgccagttacctgaacccttgcaagaacgtgttcgtagatttatgcaatacaaatggtttgcaacacgaggagttgatgaagaatccatcttgcattcattacccatcgacctctgccatgaaatccagcagcacttatgcctttcccttgttcgccgtgtcccttttttctcacaaatggatgaccagcttcttgatgccatatgtgagcgtcttgtgtcatccttgactatcaaaggaacatatatagttcaagaaggcgacccagtaaatgagatgctctttattatcagagggaaacttgagagctccacaaccaatggagggaggactggcttctttaactccatcaatctaggacctggtgacttctgtggtgaggaactattgacatgggcattgatgccaagctctagcattagcatgccttcttccactcggactgtgagagccctcactgaagttgaagcttttgcgcttcgagctgaggaccttaagtttgttgcaagtcagttcaaacgccttcacagcaagaaactacagcatgcctttaggtactattctcaccaatggaggacatggggtgcttgcttcatacaagctgcttggagaaggtttaagaagaggaagatggcaagggacttggctatgcaggagggcttatactatttgcatgtacccggccaagaggaagagggttactactacgacaacgaagaacaaacaaatcttgtaaactatgacggtgagagtggtgataggtcatcgacaggggagaagttaagcacttccatgaatcttggggccacatttctggcttctaaatttgctgcaaatacaagaaaagggattgtgcagaaagctcagctggttgatcctgattcaactagtttgcagatgcctcggatgtttaagccagatgagcctgatttttctgtagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016324 GO:0019725 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051704 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072511 GO:0098590 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

317

Amino Acids

36.45

Weight (kDa)

6.72

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14870
fragaria_vesca	FvH4_6g50510
malus_domestica	MD09G1035800.v1.1 MD17G1037400.v1.1
prunus_persica	Prupe.3G282200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0170931
rosa_laevigata	RLG00000021993
rosa_multiflora	Rmu_sc0025148.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080970
rosa_rugosa	Rorug02G0552400
rosa_samantha	Rh2BG636000 Rh2CG604500 Rh2DG647600
rosa_wichuraiana	Rw2G051780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	691
AcsI	RAATTY	1 cut(s)	833
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	566, 687
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflII	CTTAAG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	263, 476, 526, 894
AhlI	ACTAGT	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	8 cut(s)	199, 318, 420, 479, 494, 611, 872, 877
AluI	AGCT	8 cut(s)	199, 318, 420, 479, 494, 611, 872, 877
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	878
AoxI	GGCC	2 cut(s)	691, 813
ApeKI	GCWGC	3 cut(s)	139, 611, 839
ApoI	RAATTY	1 cut(s)	833
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	3 cut(s)	368, 499, 813
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	5 cut(s)	386, 398, 566, 767, 776
AvaII	GGWCC	2 cut(s)	368, 499
BanII	GRGCYC	2 cut(s)	320, 463
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	151, 598, 826
BccI	CCATC	4 cut(s)	104, 122, 365, 634
BceAI	ACGGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	690
BcuI	ACTAGT	1 cut(s)	896
BfaI	CTAG	3 cut(s)	365, 423, 897
BfmI	CTRYAG	2 cut(s)	548, 945
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	3 cut(s)	140, 612, 840
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	3 cut(s)	141, 613, 841
Bme1390I	CCNGG	2 cut(s)	372, 690
Bme18I	GGWCC	2 cut(s)	368, 499
BmgT120I	GGNCC	3 cut(s)	368, 499, 813
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	2 cut(s)	372, 690
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	5 cut(s)	16, 196, 276, 402, 897
BmuI	ACTGGG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	690
BsaJI	CCNNGG	1 cut(s)	911
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	3 cut(s)	13, 275, 346
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	911
BseGI	GGATG	3 cut(s)	196, 230, 921
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	486, 887
BseNI	ACTGG	3 cut(s)	13, 275, 346
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	151, 598, 826
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	2 cut(s)	693, 815
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	690
BslFI	GGGAC	2 cut(s)	155, 662
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmFI	GGGAC	2 cut(s)	155, 662
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	693, 815
Bsp1286I	GDGCHC	2 cut(s)	320, 463
Bsp143I	GATC	1 cut(s)	883
Bsp1720I	GCTNAGC	1 cut(s)	873
BspANI	GGCC	2 cut(s)	693, 815
BspCNI	CTCAG	2 cut(s)	487, 886
BspLI	GGNNCC	1 cut(s)	814
BspPI	GGATC	1 cut(s)	878
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	3 cut(s)	13, 275, 346
BssECI	CCNNGG	1 cut(s)	911
BssMI	GATC	1 cut(s)	883
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	454, 755
Bst6I	CTCTTC	2 cut(s)	626, 696
BstAFI	CTTAAG	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	434, 555, 598
BstDEI	CTNAG	2 cut(s)	495, 873
BstF5I	GGATG	3 cut(s)	196, 230, 921
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	1 cut(s)	886
BstMBI	GATC	1 cut(s)	883
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 537, 931
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	3 cut(s)	436, 557, 686
BstSCI	CCNGG	2 cut(s)	370, 688
BstSFI	CTRYAG	2 cut(s)	548, 945
BstV1I	GCAGC	3 cut(s)	151, 598, 826
BstXI	CCANNNNNNTGG	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	693, 815
BtsCI	GGATG	3 cut(s)	196, 230, 921
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	434, 555, 598
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	368, 499, 813
CseI	GACGC	1 cut(s)	209
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	565, 686
CviAII	CATG	7 cut(s)	128, 402, 433, 554, 588, 683, 802
CviQI	GTAC	2 cut(s)	565, 686
DdeI	CTNAG	2 cut(s)	495, 873
DpnI	GATC	1 cut(s)	885
DpnII	GATC	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	691
Eam1104I	CTCTTC	2 cut(s)	626, 696
EarI	CTCTTC	2 cut(s)	626, 696
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	2 cut(s)	320, 463
Eco47I	GGWCC	2 cut(s)	368, 499
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	2 cut(s)	368, 499
EcoRII	CCWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	320, 463
FaeI	CATG	7 cut(s)	131, 405, 436, 557, 591, 686, 805
FaqI	GGGAC	2 cut(s)	155, 662
FatI	CATG	7 cut(s)	127, 401, 432, 553, 587, 682, 801
FauNDI	CATATG	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	140, 612, 840
FokI	GGATG	3 cut(s)	203, 217, 928
FriOI	GRGCYC	2 cut(s)	320, 463
Fsp4HI	GCNGC	3 cut(s)	140, 612, 840
FspBI	CTAG	3 cut(s)	365, 423, 897
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	3 cut(s)	140, 612, 840
HaeIII	GGCC	2 cut(s)	693, 815
HapII	CCGG	1 cut(s)	690
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	7 cut(s)	131, 405, 436, 557, 591, 686, 805
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	3 cut(s)	92, 805, 890
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	5 cut(s)	386, 398, 566, 767, 776
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	3 cut(s)	302, 450, 915
Hpy188III	TCNNGA	3 cut(s)	203, 263, 887
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	4 cut(s)	260, 447, 542, 615
HpyCH4III	ACNGT	2 cut(s)	454, 755
HpyCH4IV	ACGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 537, 931
HpyF3I	CTNAG	2 cut(s)	495, 873
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	7 cut(s)	131, 405, 436, 557, 591, 686, 805
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	1 cut(s)	883
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	3 cut(s)	151, 598, 826
LweI	GCATC	5 cut(s)	16, 196, 276, 402, 897
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	3 cut(s)	365, 423, 897
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	3 cut(s)	15, 374, 707
MalI	GATC	1 cut(s)	885
MboI	GATC	1 cut(s)	883
MboII	GAAGA	6 cut(s)	101, 432, 643, 649, 713, 737
MhlI	GDGCHC	2 cut(s)	320, 463
MluCI	AATT	1 cut(s)	833
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	5 cut(s)	351, 504, 627, 791, 921
MslI	CAYNNNNRTG	2 cut(s)	431, 800
MspA1I	CMGCKG	1 cut(s)	877
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	2 cut(s)	372, 690
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	491, 537, 931
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	1 cut(s)	883
NlaIII	CATG	7 cut(s)	131, 405, 436, 557, 591, 686, 805
NlaIV	GGNNCC	1 cut(s)	814
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	3 cut(s)	436, 557, 686
PaeI	GCATGC	2 cut(s)	436, 557
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	92, 805, 890
PkrI	GCNGC	3 cut(s)	141, 613, 841
PpuMI	RGGWCCY	2 cut(s)	368, 499
Psp124BI	GAGCTC	1 cut(s)	320
Psp5II	RGGWCCY	2 cut(s)	368, 499
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	814
PspPI	GGNCC	3 cut(s)	368, 499, 813
PspPPI	RGGWCCY	2 cut(s)	368, 499
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	2 cut(s)	566, 687
RsaNI	GTAC	2 cut(s)	565, 686
RseI	CAYNNNNRTG	2 cut(s)	431, 800
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	5 cut(s)	351, 504, 627, 791, 921
SatI	GCNGC	3 cut(s)	140, 612, 840
Sau3AI	GATC	1 cut(s)	883
Sau96I	GGNCC	3 cut(s)	368, 499, 813
ScrFI	CCNGG	2 cut(s)	372, 690
SduI	GDGCHC	2 cut(s)	320, 463
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	5 cut(s)	16, 196, 276, 402, 897
SfcI	CTRYAG	2 cut(s)	548, 945
SinI	GGWCC	2 cut(s)	368, 499
SmiMI	CAYNNNNRTG	2 cut(s)	431, 800
SmlI	CTYRAG	2 cut(s)	311, 503
SmoI	CTYRAG	2 cut(s)	311, 503
SpeI	ACTAGT	1 cut(s)	896
SphI	GCATGC	2 cut(s)	436, 557
Sse9I	AATT	1 cut(s)	833
SspMI	CTAG	3 cut(s)	365, 423, 897
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	370, 688
TaaI	ACNGT	2 cut(s)	454, 755
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	117, 490, 776
TasI	AATT	1 cut(s)	833
TfiI	GAWTC	3 cut(s)	92, 805, 890
Tru1I	TTAA	5 cut(s)	351, 504, 627, 791, 921
Tru9I	TTAA	5 cut(s)	351, 504, 627, 791, 921
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	3 cut(s)	139, 611, 839
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	5 cut(s)	96, 102, 144, 592, 818
TspRI	CASTG	1 cut(s)	472
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	2 cut(s)	368, 499
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	3 cut(s)	436, 557, 686
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	3 cut(s)	365, 423, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.