Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004152

Physical Location & Seq

Genomic Coordinates Forward (+)

3405198 .. 3424357

Gene Structure 19160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1046500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3165 bp

ATGGAGGAGGAACGGGAGAGAGAAATCGGAGAGAAGATAAAGATTGGAGTTTGTGTGATGGAAAAGAAGGTGTTTTCGGCGCCGATGGGGGAGATTCTCGAAAGGCTGCAAGCATTTGGCGAATTTGAGATCACACATTTTGGGGACAGAGTCATTCTTGAAGATCCAATCGAAAGCTGGCCAATTTGTGACTGCTTGATTGCCTTTCATTCCTCGGGCTATCCTTTGGAAAAGGCTGAGGCATATGCTGCTTTGAGGAAGCCTTTTCTAGTAAATGAGTTGGAGCCGCAACACCTTCTCCATGACCGGAGGAAGGTATATGAGCATCTTGAAATGCATGGAGTCCCTGTTCCCAGATATGCCCTTGTGAATAGAGAAGTACCGTATCAAGAGCTGGACTATTTTATTGAGGAAGAAGATTTTGTTGAGGTTCATGGTCATCGTTTCTGGAAGCCATTTGTAGAGAAGCCTGTTGAAGGTAATGATCATAGTATAATGATATATTATCCCAGTTCGGCAGGTGGAGGAATGAAGGAATTGTTTAGGAAGGTTGGTAACCGGTCTAGTGAGTTCCATCCGGAGGTTAGACGAGTGAGACGTGAAGGCTCTTATATATACGAGGAATTCATGCCAACTGGAGGAACAGATGTCAAGTCTCCTGTTGTTGATGGTGTTGTCATGAGAAATCCTGATGGCAAGGAAGTGAGGTATCCTGTTTTACTGACACCTACTGAGAAGCAAATGGCAAGGGAGGTCTGCATTGCATTTAGGCAAGCGGTTTGTGGGTTTGACCTTTTGCGCTGTGAGGGACGCTCCTATGTTTGTGACGTAAATGGATGGAGTTTTGTAAAAAATTCTCACAAGTATTATGATGATGCTGCTTGTGTGCTCAGGAAGATATTTTTAGACGCCAAGGCCCCTCATCTTTCTTCTGCAATTCCACCAACATTACCATGGAAAGTCAATGAACCAAGCCAACCTACTGAGGGACTAACTCGTCAAGGAAGTGGAATCATTGGCACATTTGGGCAATCGGAGGAGCTACGTTGTGTTATTGCTATTATTCGTCATGGTGATAGAACTCCCAAACAGAAGGTAAAGCTGAAGGTTACTGAGGAAAAGCTGCTAAACTTGATGCTTAAGTACAATGGTGGACGACCTAGATCCGAGACAAAATTGAAAAGTGCTGTCCAATTGCAAGATTTATTAGATGCCACACGAATGCTAGTACCTCGTACTAGACCAGGTCGAGAAAGTGACAGTGAGGCAGAAGACATTGAACATGCTGAAAAGCTTCGTCAAGTTAAAGCAGTGCTTGAGGAGGGGGGCCATTTCTCTGGCATTTATAGGAAGGTTCAACTAAAGCCACTAAAGTGGGTTAAAGTGGCAAAAAGTAATGGTGAAGGTGAGGAAGAACGCCCAGTTGAAGCTTTGATGGTTCTTAAATATGGGGGTGTCCTTACACATGCTGGAAGAAAGCAGGCTGAGGAGCTGGGTAGATATTTTCGGAATAATATGTATCCAGGTGAAGGTACTGGCCTGCTTCGCCTCCATAGCACCTATCGTCATGATCTTAAAATCTACAGCTCTGATGAGGGCCGTGTGCAGATGTCTGCAGCTGCTTTTGCTAAAGGCCTCCTTGATCTAGAAGGGCAGCTAACACCAATACTGGTTTCCCTTGTTAGCAAGGACTCCTCTATGTTGGATGGACTTGACAACGCAAGTGTTGAGATGGATGAAGCAAAGGCTAGGTTGAATGAGATTATTACTTCTGGTTTAAAGACGGGTAATAATGGTGCAACACCTCCTTGGATGGCTGATGGAAGTGGTCTGCCTTCAAATGCTTCTGAACTTCTACCTAAATTGGTAAAATTGACTAGGAAGGTCACTGAACAAGTAAGACTGCTAGCCAAGGATGAAGATGAGGAACTTACAAAGACAAGCTCATACGATGTAATACTTCCTTATGACCAAGCAAGGGCCCTTGGTAAGACTAACATTGATGTTGATCGTATTGCTGCTGGATTACCATGCGGTAGTGAGGGATTCCTCTTGATGTATGCTCGATGGAGAAAGCTTGTAAGGGACTTGTACAGTGAACGAAAAGAACGATTCGACTTAACACAAATTCCAGACGTTTATGACTCGTGCAAATACGATCTCCTGCATAATGCACATCTTAATCTAGAAGGTCTAGATGAGCTGTTCAAAGTTGCTCAGTTACTTGCAGATGGAGTCATCCCAAATGAGTATGGCATTAATCCAACACAGAAGCTCAAGATTGGTTCAAAGATTGCTCGTCGTTTGTTGGGTAAGATAATGATTGACCTGAGGAATACTCGCGAAGAAGCCATCAGTGTTGCTGCTGAACCAAAGAGTGATCAGGATGAACATTCAAAGTCAACCAATACCGAGAAGGAAGATAAGAAGCATCATCCCAAGCTTCATGCTAAGATTGATGACAGAAAATCTAGCACAAGTGATACGCCAAAGCCTTCTGCTAAGAACGAAGATACGAGGAGACCCGGTACAACAAGCGAGATATCAATAGATCAGGACGACGACGATGACAAAGAGACCCAATATCGTTTGGATCCAAAGTATGCAAATGTCAGAACGCCCGAACGGCATGTGCGGACGCGCCTGTACTTTACATCAGAATCTCACATCCACTCTCTAATGAATGTTCTCCGTTACTGTAACCTGGACGAGTCTCTTCAAGGAGAGGATGGCCTCGTTTGCCATAGTGCTTTGGAGCGTTTATACAATACTAAGGAGCTTGACTACATGAGTTATATAGTTCTGAGGATGTTCGAGGACACCGCGGTTGCTCTTGAAGATACGAAAAGATTTCGCGTGGAGTTGACCTTCAGCCGCGGTGCAGATCTATCACCATTGGAGAGCAATGACAGTAAGGCTTCGTTCTTGCGTCAAGAGCACACACTACCGGTCATGGGTCCAGAGAGGTTGCAAGAGGTGGGATCATATCTAACATTCGATAAAATGGAGAAAATGATACGCTCATTTGCGATGCCAGCGGAAGATTTTCCGCCACCATCAACTCCAGCAGGATTCTCGGGCTATTTCTCAAAAAGTGCGGCGGTGCTCGAGCGCCTGGTAAATCTCTGGCCTTTCAATAAGCATGCTAATTCTAATGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000827 GO:0000828 GO:0000829 GO:0000832 GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009814 GO:0009817 GO:0009861 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0019222 GO:0019637 GO:0019751 GO:0030554 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032553 GO:0032555 GO:0032559 GO:0032958 GO:0033857 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043647 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046136 GO:0046165 GO:0046173 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0062012 GO:0062013 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0090407 GO:0097159 GO:0097367 GO:0098542 GO:1900150 GO:1900367 GO:1901265 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1904965 GO:1904966 GO:1905034 GO:1905036 GO:2000068

KEGG Pathways

Metabolic & Signaling

ko04070 map04070

Pfam Domains

Protein Families

His_Phos_2

Protein Analysis

1055

Amino Acids

119.55

Weight (kDa)

6.08

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPIP5K2_N	PF18086	13 - 102	6.1e-38	Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
His_Phos_2	PF00328	347 - 958	1.8e-71	Histidine phosphatase superfamily (branch 2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01310 AT3G01310 AT3G01310 AT5G15070 AT5G15070 AT5G15070 AT5G15070 AT5G15070 AT5G15070 AT5G15070
fragaria_vesca	FvH4_6g49380 FvH4_6g49380 FvH4_6g49380 FvH4_6g49380
malus_domestica	MD17G1046500.v1.1
prunus_persica	Prupe.3G272600_v2.0.a1 Prupe.3G272600_v2.0.a1 Prupe.3G272600_v2.0.a1 Prupe.3G272600_v2.0.a1
pyrus_communis	pycom06g01750 pycom09g09210 pycom111g03540 pycom17g04140
rosa_chinensis	RchiOBHm_Chr2g0169241
rosa_laevigata	RLG00000021845
rosa_multiflora	Rmu_ssc0000440.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082320
rosa_rugosa	Rorug02G0538500
rosa_samantha	Rh2AG610000 Rh2BG622900 Rh2CG591400 Rh2DG633700
rosa_wichuraiana	Rw2G050580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	509
AasI	GACNNNNNNGTC	1 cut(s)	996
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	5 cut(s)	2343, 2641, 2825, 2856, 2877
AccIII	TCCGGA	1 cut(s)	577
AclWI	GGATC	5 cut(s)	158, 1158, 2588, 2601, 2989
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	4 cut(s)	122, 623, 853, 2127
AcuI	CTGAAG	2 cut(s)	1124, 2854
AcyI	GRCGYC	2 cut(s)	80, 909
AfaI	GTAC	8 cut(s)	381, 1145, 1230, 1237, 1534, 2093, 2530, 2648
AfiI	CCNNNNNNNGG	8 cut(s)	313, 476, 580, 638, 986, 1529, 1978, 2954
AflII	CTTAAG	1 cut(s)	1139
AgeI	ACCGGT	2 cut(s)	558, 2947
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	4 cut(s)	1243, 1522, 2703, 3114
AjuI	GAANNNNNNNTTGG	2 cut(s)	1657, 1689
AleI	CACNNNNGTG	1 cut(s)	1372
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
Alw21I	GWGCWC	3 cut(s)	891, 2940, 3108
Alw26I	GTCTC	6 cut(s)	589, 660, 1163, 2515, 2570, 2718
AlwI	GGATC	5 cut(s)	158, 1158, 2588, 2601, 2989
Ama87I	CYCGRG	3 cut(s)	214, 3076, 3107
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	9 cut(s)	179, 915, 1327, 1537, 1597, 1633, 1980, 2731, 3128
ApaI	GGGCCC	1 cut(s)	1984
ApeKI	GCWGC	9 cut(s)	106, 248, 878, 1123, 1616, 1619, 1654, 2018, 2363
ApoI	RAATTY	4 cut(s)	122, 623, 853, 2127
AseI	ATTAAT	1 cut(s)	2259
AsiGI	ACCGGT	2 cut(s)	558, 2947
Asp700I	GAANNNNTTC	2 cut(s)	1293, 3045
AspLEI	GCGC	4 cut(s)	82, 801, 2643, 3114
AspS9I	GGNCC	6 cut(s)	916, 1327, 1597, 1980, 1981, 2957
AsuC2I	CCSGG	1 cut(s)	2526
AsuHPI	GGTGA	5 cut(s)	1085, 1412, 1418, 1538, 2883
AsuNHI	GCTAGC	1 cut(s)	1906
AvaI	CYCGRG	3 cut(s)	214, 3076, 3107
AvaII	GGWCC	1 cut(s)	2957
AxyI	CCTNAGG	1 cut(s)	2330
BaeGI	GKGCMC	1 cut(s)	1984
BalI	TGGCCA	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	2593
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	1984
BauI	CACGAG	1 cut(s)	2146
BbsI	GAAGAC	1 cut(s)	1278
Bbv12I	GWGCWC	3 cut(s)	891, 2940, 3108
BbvCI	CCTCAGC	2 cut(s)	237, 1485
BbvI	GCAGC	9 cut(s)	93, 235, 865, 1110, 1606, 1628, 1666, 2005, 2350
BceAI	ACGGC	2 cut(s)	1584, 2642
BcgI	CGANNNNNNTGC	2 cut(s)	3057, 3091
BciT130I	CCWGG	4 cut(s)	1245, 1524, 2705, 3116
BciVI	GTATCC	2 cut(s)	720, 1530
BclI	TGATCA	2 cut(s)	484, 2380
BcnI	CCSGG	1 cut(s)	2526
BcoDI	GTCTC	6 cut(s)	589, 660, 1163, 2515, 2570, 2718
BfmI	CTRYAG	2 cut(s)	1582, 1614
BfoI	RGCGCY	2 cut(s)	83, 3115
BfrI	CTTAAG	1 cut(s)	1139
BfuAI	ACCTGC	1 cut(s)	509
BfuI	GTATCC	2 cut(s)	720, 1530
BglI	GCCNNNNNGGC	1 cut(s)	2626
BglII	AGATCT	1 cut(s)	2884
Bme1390I	CCNGG	5 cut(s)	1245, 1524, 2526, 2705, 3116
Bme18I	GGWCC	1 cut(s)	2957
BmeT110I	CYCGRG	3 cut(s)	214, 3076, 3107
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	6 cut(s)	916, 1327, 1597, 1980, 1981, 2957
BmiI	GGNNCC	7 cut(s)	81, 285, 918, 1328, 1982, 2595, 2958
BmrFI	CCNGG	5 cut(s)	1245, 1524, 2526, 2705, 3116
BmrI	ACTGGG	2 cut(s)	504, 1415
BmsI	GCATC	6 cut(s)	334, 865, 1125, 1201, 2440, 3021
BmtI	GCTAGC	1 cut(s)	1910
BmuI	ACTGGG	2 cut(s)	504, 1415
BpiI	GAAGAC	1 cut(s)	1278
BplI	GAGNNNNNCTC	4 cut(s)	797, 829, 2323, 2355
BpmI	CTGGAG	2 cut(s)	657, 3048
Bpu10I	CCTNAGC	3 cut(s)	237, 890, 1485
BpuEI	CTTGAG	2 cut(s)	1337, 2261
BpuMI	CCSGG	1 cut(s)	2526
BsaBI	GATNNNNATC	1 cut(s)	2007
BsaHI	GRCGYC	2 cut(s)	80, 909
BsaI	GGTCTC	2 cut(s)	2515, 2570
BsaJI	CCNNGG	8 cut(s)	213, 912, 953, 1808, 1911, 1984, 2823, 2875
BsaWI	WCCGGW	4 cut(s)	306, 558, 577, 2947
BsaXI	ACNNNNNCTCC	8 cut(s)	39, 69, 282, 312, 333, 363, 2512, 2542
Bsc4I	CCNNNNNNNGG	8 cut(s)	313, 476, 580, 638, 986, 1529, 1978, 2954
Bse118I	RCCGGY	2 cut(s)	558, 2947
Bse1I	ACTGG	5 cut(s)	510, 640, 1421, 1540, 1674
Bse21I	CCTNAGG	1 cut(s)	2330
Bse3DI	GCAATG	2 cut(s)	759, 2911
Bse8I	GATNNNNATC	1 cut(s)	2007
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	4 cut(s)	1245, 1524, 2705, 3116
BseDI	CCNNGG	8 cut(s)	213, 912, 953, 1808, 1911, 1984, 2823, 2875
BseJI	GATNNNNATC	1 cut(s)	2007
BseLI	CCNNNNNNNGG	8 cut(s)	313, 476, 580, 638, 986, 1529, 1978, 2954
BseMI	GCAATG	2 cut(s)	759, 2911
BseMII	CTCAG	9 cut(s)	228, 723, 904, 975, 1104, 1476, 2231, 2321, 2795
BseNI	ACTGG	5 cut(s)	510, 640, 1421, 1540, 1674
BseRI	GAGGAG	6 cut(s)	20, 1052, 1334, 1502, 1684, 2533
BseSI	GKGCMC	1 cut(s)	1984
BseXI	GCAGC	9 cut(s)	93, 235, 865, 1110, 1606, 1628, 1666, 2005, 2350
BseYI	CCCAGC	1 cut(s)	1492
BsgI	GTGCAG	2 cut(s)	1625, 2901
Bsh1236I	CGCG	5 cut(s)	2343, 2641, 2825, 2856, 2877
BshFI	GGCC	9 cut(s)	181, 917, 1329, 1539, 1599, 1635, 1982, 2733, 3130
BshNI	GGYRCC	1 cut(s)	79
BshTI	ACCGGT	2 cut(s)	558, 2947
BsiHKAI	GWGCWC	3 cut(s)	891, 2940, 3108
BsiHKCI	CYCGRG	3 cut(s)	214, 3076, 3107
BsiSI	CCGG	5 cut(s)	307, 559, 578, 2526, 2948
BslFI	GGGAC	5 cut(s)	158, 329, 822, 1002, 2099
BslI	CCNNNNNNNGG	8 cut(s)	313, 476, 580, 638, 986, 1529, 1978, 2954
BsmAI	GTCTC	6 cut(s)	589, 660, 1163, 2515, 2570, 2718
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	5 cut(s)	158, 329, 822, 1002, 2099
BsmI	GAATGC	1 cut(s)	1227
BsnI	GGCC	9 cut(s)	181, 917, 1329, 1539, 1599, 1635, 1982, 2733, 3130
Bso31I	GGTCTC	2 cut(s)	2515, 2570
BsoBI	CYCGRG	3 cut(s)	214, 3076, 3107
Bsp120I	GGGCCC	1 cut(s)	1980
Bsp1286I	GDGCHC	4 cut(s)	891, 1984, 2940, 3108
Bsp13I	TCCGGA	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	2091
Bsp19I	CCATGG	1 cut(s)	953
Bsp68I	TCGCGA	1 cut(s)	2343
BspANI	GGCC	9 cut(s)	181, 917, 1329, 1539, 1599, 1635, 1982, 2733, 3130
BspCNI	CTCAG	9 cut(s)	229, 724, 903, 976, 1105, 1477, 2230, 2322, 2796
BspEI	TCCGGA	1 cut(s)	577
BspFNI	CGCG	5 cut(s)	2343, 2641, 2825, 2856, 2877
BspHI	TCATGA	2 cut(s)	678, 1567
BspLI	GGNNCC	7 cut(s)	81, 285, 918, 1328, 1982, 2595, 2958
BspMAI	CTGCAG	1 cut(s)	1618
BspMI	ACCTGC	1 cut(s)	509
BspOI	GCTAGC	1 cut(s)	1910
BspPI	GGATC	5 cut(s)	158, 1158, 2588, 2601, 2989
BspT107I	GGYRCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	1139
BspTNI	GGTCTC	2 cut(s)	2515, 2570
BsrDI	GCAATG	2 cut(s)	759, 2911
BsrFI	RCCGGY	2 cut(s)	558, 2947
BsrGI	TGTACA	1 cut(s)	2091
BsrI	ACTGG	5 cut(s)	510, 640, 1421, 1540, 1674
BssAI	RCCGGY	2 cut(s)	558, 2947
BssECI	CCNNGG	8 cut(s)	213, 912, 953, 1808, 1911, 1984, 2823, 2875
BssNI	GRCGYC	2 cut(s)	80, 909
BssSI	CACGAG	1 cut(s)	2146
BssT1I	CCWWGG	5 cut(s)	912, 953, 1808, 1911, 1984
Bst2BI	CACGAG	1 cut(s)	2146
Bst2UI	CCWGG	4 cut(s)	1245, 1524, 2705, 3116
Bst4CI	ACNGT	5 cut(s)	384, 1262, 2096, 2699, 2912
Bst6I	CTCTTC	1 cut(s)	2721
BstACI	GRCGYC	2 cut(s)	80, 909
BstAFI	CTTAAG	1 cut(s)	1139
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	2091
BstC8I	GCNNGC	8 cut(s)	111, 179, 774, 1482, 1541, 1908, 3036, 3144
BstDSI	CCRYGG	3 cut(s)	953, 2823, 2875
BstEII	GGTNACC	1 cut(s)	554
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstFNI	CGCG	5 cut(s)	2343, 2641, 2825, 2856, 2877
BstH2I	RGCGCY	2 cut(s)	83, 3115
BstHHI	GCGC	4 cut(s)	82, 801, 2643, 3114
BstMAI	GTCTC	6 cut(s)	589, 660, 1163, 2515, 2570, 2718
BstMWI	GCNNNNNNNGC	8 cut(s)	248, 1545, 1554, 1625, 2626, 2739, 2935, 3035
BstNI	CCWGG	4 cut(s)	1245, 1524, 2705, 3116
BstNSI	RCATGY	4 cut(s)	1286, 1469, 2633, 3146
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	5 cut(s)	1243, 1522, 2524, 2703, 3114
BstSFI	CTRYAG	2 cut(s)	1582, 1614
BstSLI	GKGCMC	1 cut(s)	1984
BstUI	CGCG	5 cut(s)	2343, 2641, 2825, 2856, 2877
BstV1I	GCAGC	9 cut(s)	93, 235, 865, 1110, 1606, 1628, 1666, 2005, 2350
BstV2I	GAAGAC	1 cut(s)	1278
BstX2I	RGATCY	4 cut(s)	163, 1163, 2593, 2884
BstXI	CCANNNNNNTGG	2 cut(s)	1337, 1374
BstYI	RGATCY	4 cut(s)	163, 1163, 2593, 2884
Bsu36I	CCTNAGG	1 cut(s)	2330
BsuI	GTATCC	2 cut(s)	720, 1530
BsuRI	GGCC	9 cut(s)	181, 917, 1329, 1539, 1599, 1635, 1982, 2733, 3130
BtgI	CCRYGG	3 cut(s)	953, 2823, 2875
BtgZI	GCGATG	1 cut(s)	3044
BtrI	CACGTC	1 cut(s)	599
BtsI	GCAGTG	1 cut(s)	1317
BtsIMutI	CAGTG	5 cut(s)	1267, 1317, 1887, 2101, 2362
BtuMI	TCGCGA	1 cut(s)	2343
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	8 cut(s)	111, 179, 774, 1482, 1541, 1908, 3036, 3144
CciI	TCATGA	2 cut(s)	678, 1567
CfoI	GCGC	4 cut(s)	82, 801, 2643, 3114
Cfr10I	RCCGGY	2 cut(s)	558, 2947
Cfr13I	GGNCC	6 cut(s)	916, 1327, 1597, 1980, 1981, 2957
Cfr42I	CCGCGG	2 cut(s)	2826, 2878
CseI	GACGC	4 cut(s)	819, 917, 2647, 2918
CsiI	ACCWGGT	1 cut(s)	1243
Csp6I	GTAC	8 cut(s)	380, 1144, 1229, 1236, 1533, 2092, 2529, 2647
CspAI	ACCGGT	2 cut(s)	558, 2947
CviQI	GTAC	8 cut(s)	380, 1144, 1229, 1236, 1533, 2092, 2529, 2647
DinI	GGCGCC	1 cut(s)	81
DraI	TTTAAA	1 cut(s)	1779
DrdI	GACNNNNNNGTC	1 cut(s)	996
DseDI	GACNNNNNNGTC	1 cut(s)	996
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	2721
EarI	CTCTTC	1 cut(s)	2721
EciI	GGCGGA	1 cut(s)	3039
Eco130I	CCWWGG	5 cut(s)	912, 953, 1808, 1911, 1984
Eco147I	AGGCCT	1 cut(s)	1635
Eco24I	GRGCYC	1 cut(s)	1984
Eco31I	GGTCTC	2 cut(s)	2515, 2570
Eco32I	GATATC	1 cut(s)	2544
Eco47I	GGWCC	1 cut(s)	2957
Eco57I	CTGAAG	2 cut(s)	1124, 2854
Eco81I	CCTNAGG	1 cut(s)	2330
Eco88I	CYCGRG	3 cut(s)	214, 3076, 3107
Eco91I	GGTNACC	1 cut(s)	554
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	3 cut(s)	916, 1980, 1981
EcoO65I	GGTNACC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	4 cut(s)	1243, 1522, 2703, 3114
EcoRV	GATATC	1 cut(s)	2544
EcoT14I	CCWWGG	5 cut(s)	912, 953, 1808, 1911, 1984
EcoT22I	ATGCAT	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	1984
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	5 cut(s)	912, 953, 1808, 1911, 1984
Esp3I	CGTCTC	1 cut(s)	589
FalI	AAGNNNNNCTT	4 cut(s)	1299, 1331, 1623, 1655
FaqI	GGGAC	5 cut(s)	158, 329, 822, 1002, 2099
FauNDI	CATATG	1 cut(s)	244
FbaI	TGATCA	2 cut(s)	484, 2380
FriOI	GRGCYC	1 cut(s)	1984
GlaI	GCGC	4 cut(s)	81, 800, 2642, 3113
GsaI	CCCAGC	1 cut(s)	1496
GsuI	CTGGAG	2 cut(s)	657, 3048
HaeII	RGCGCY	2 cut(s)	83, 3115
HaeIII	GGCC	9 cut(s)	181, 917, 1329, 1539, 1599, 1635, 1982, 2733, 3130
HapII	CCGG	5 cut(s)	307, 559, 578, 2526, 2948
HgaI	GACGC	4 cut(s)	819, 917, 2647, 2918
HhaI	GCGC	4 cut(s)	82, 801, 2643, 3114
Hin1I	GRCGYC	2 cut(s)	80, 909
Hin6I	GCGC	4 cut(s)	80, 799, 2641, 3112
HinP1I	GCGC	4 cut(s)	80, 799, 2641, 3112
HincII	GTYRAC	2 cut(s)	2403, 2865
HindII	GTYRAC	2 cut(s)	2403, 2865
HindIII	AAGCTT	4 cut(s)	1292, 1428, 2075, 2441
HpaII	CCGG	5 cut(s)	307, 559, 578, 2526, 2948
HphI	GGTGA	5 cut(s)	1085, 1412, 1418, 1538, 2883
Hpy166II	GTNNAC	4 cut(s)	1154, 2099, 2403, 2865
Hpy188I	TCNGA	9 cut(s)	29, 1036, 1168, 1509, 1591, 1849, 2615, 2659, 2805
Hpy8I	GTNNAC	4 cut(s)	1154, 2099, 2403, 2865
Hpy99I	CGWCG	3 cut(s)	2304, 2564, 2567
HpyCH4III	ACNGT	5 cut(s)	384, 1262, 2096, 2699, 2912
HpyCH4IV	ACGT	4 cut(s)	598, 828, 1045, 2136
HpyF10VI	GCNNNNNNNGC	8 cut(s)	248, 1545, 1554, 1625, 2626, 2739, 2935, 3035
HpySE526I	ACGT	4 cut(s)	598, 828, 1045, 2136
Hsp92I	GRCGYC	2 cut(s)	80, 909
HspAI	GCGC	4 cut(s)	80, 799, 2641, 3112
KasI	GGCGCC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	577
Ksp22I	TGATCA	2 cut(s)	484, 2380
KspI	CCGCGG	2 cut(s)	2826, 2878
LmnI	GCTCC	6 cut(s)	283, 818, 1039, 1489, 2755, 2776
Lsp1109I	GCAGC	9 cut(s)	93, 235, 865, 1110, 1606, 1628, 1666, 2005, 2350
LweI	GCATC	6 cut(s)	334, 865, 1125, 1201, 2440, 3021
MabI	ACCWGGT	1 cut(s)	1243
MaeII	ACGT	4 cut(s)	598, 828, 1045, 2136
MaeIII	GTNAC	9 cut(s)	188, 554, 824, 1108, 1256, 1885, 2220, 2693, 2699
MfeI	CAATTG	1 cut(s)	1193
MflI	RGATCY	4 cut(s)	163, 1163, 2593, 2884
MhlI	GDGCHC	4 cut(s)	891, 1984, 2940, 3108
MlsI	TGGCCA	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	181
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	6 cut(s)	159, 351, 1685, 2138, 2244, 2720
MmeI	TCCRAC	3 cut(s)	261, 1683, 2288
Mox20I	TGGCCA	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	339
MroI	TCCGGA	1 cut(s)	577
MroXI	GAANNNNTTC	2 cut(s)	1293, 3045
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	9 cut(s)	1140, 1305, 1380, 1443, 1575, 1778, 2120, 2181, 2259
MslI	CAYNNNNRTG	3 cut(s)	952, 1220, 1372
Msp20I	TGGCCA	1 cut(s)	181
MspA1I	CMGCKG	4 cut(s)	1619, 2825, 2877, 3038
MspCI	CTTAAG	1 cut(s)	1139
MspI	CCGG	5 cut(s)	307, 559, 578, 2526, 2948
MspR9I	CCNGG	5 cut(s)	1245, 1524, 2526, 2705, 3116
MunI	CAATTG	1 cut(s)	1193
Mva1269I	GAATGC	1 cut(s)	1227
MvaI	CCWGG	4 cut(s)	1245, 1524, 2705, 3116
MvnI	CGCG	5 cut(s)	2343, 2641, 2825, 2856, 2877
MwoI	GCNNNNNNNGC	8 cut(s)	248, 1545, 1554, 1625, 2626, 2739, 2935, 3035
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	2526
NcoI	CCATGG	1 cut(s)	953
NdeI	CATATG	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	1906
NlaIV	GGNNCC	7 cut(s)	81, 285, 918, 1328, 1982, 2595, 2958
NmuCI	GTSAC	4 cut(s)	188, 824, 1256, 1885
NruI	TCGCGA	1 cut(s)	2343
NsiI	ATGCAT	1 cut(s)	339
NspI	RCATGY	4 cut(s)	1286, 1469, 2633, 3146
OliI	CACNNNNGTG	1 cut(s)	1372
PaeI	GCATGC	1 cut(s)	3146
PaeR7I	CTCGAG	1 cut(s)	3107
PagI	TCATGA	2 cut(s)	678, 1567
PaqCI	CACCTGC	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	1635
PcsI	WCGNNNNNNNCGW	2 cut(s)	595, 2107
PctI	GAATGC	1 cut(s)	1227
PdmI	GAANNNNTTC	2 cut(s)	1293, 3045
PfeI	GAWTC	6 cut(s)	94, 1011, 2046, 2112, 2660, 3072
PflFI	GACNNNGTC	2 cut(s)	149, 1245
PinAI	ACCGGT	2 cut(s)	558, 2947
PleI	GAGTC	6 cut(s)	158, 350, 1685, 2138, 2243, 2719
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	6 cut(s)	158, 350, 1685, 2138, 2243, 2719
PshBI	ATTAAT	1 cut(s)	2259
Psp6I	CCWGG	4 cut(s)	1243, 1522, 2703, 3114
PspEI	GGTNACC	1 cut(s)	554
PspFI	CCCAGC	1 cut(s)	1492
PspGI	CCWGG	4 cut(s)	1243, 1522, 2703, 3114
PspN4I	GGNNCC	7 cut(s)	81, 285, 918, 1328, 1982, 2595, 2958
PspOMI	GGGCCC	1 cut(s)	1980
PspPI	GGNCC	6 cut(s)	916, 1327, 1597, 1980, 1981, 2957
PspXI	VCTCGAGB	1 cut(s)	3107
PstI	CTGCAG	1 cut(s)	1618
PsuI	RGATCY	4 cut(s)	163, 1163, 2593, 2884
PsyI	GACNNNGTC	2 cut(s)	149, 1245
PvuII	CAGCTG	1 cut(s)	1619
RruI	TCGCGA	1 cut(s)	2343
RsaI	GTAC	8 cut(s)	381, 1145, 1230, 1237, 1534, 2093, 2530, 2648
RsaNI	GTAC	8 cut(s)	380, 1144, 1229, 1236, 1533, 2092, 2529, 2647
RseI	CAYNNNNRTG	3 cut(s)	952, 1220, 1372
SacII	CCGCGG	2 cut(s)	2826, 2878
SaqAI	TTAA	9 cut(s)	1140, 1305, 1380, 1443, 1575, 1778, 2120, 2181, 2259
Sau96I	GGNCC	6 cut(s)	916, 1327, 1597, 1980, 1981, 2957
SchI	GAGTC	6 cut(s)	159, 351, 1685, 2138, 2244, 2720
ScrFI	CCNGG	5 cut(s)	1245, 1524, 2526, 2705, 3116
SduI	GDGCHC	4 cut(s)	891, 1984, 2940, 3108
SexAI	ACCWGGT	1 cut(s)	1243
SfaNI	GCATC	6 cut(s)	334, 865, 1125, 1201, 2440, 3021
SfcI	CTRYAG	2 cut(s)	1582, 1614
SfoI	GGCGCC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	3107
Sfr303I	CCGCGG	2 cut(s)	2826, 2878
SgrBI	CCGCGG	2 cut(s)	2826, 2878
SinI	GGWCC	1 cut(s)	2957
SlaI	CTCGAG	1 cut(s)	3107
SmiMI	CAYNNNNRTG	3 cut(s)	952, 1220, 1372
SmlI	CTYRAG	4 cut(s)	1139, 1316, 2276, 3107
SmoI	CTYRAG	4 cut(s)	1139, 1316, 2276, 3107
SphI	GCATGC	1 cut(s)	3146
SseBI	AGGCCT	1 cut(s)	1635
SspDI	GGCGCC	1 cut(s)	79
StuI	AGGCCT	1 cut(s)	1635
StyD4I	CCNGG	5 cut(s)	1243, 1522, 2524, 2703, 3114
StyI	CCWWGG	5 cut(s)	912, 953, 1808, 1911, 1984
TaaI	ACNGT	5 cut(s)	384, 1262, 2096, 2699, 2912
TaiI	ACGT	4 cut(s)	601, 831, 1048, 2139
TaqI	TCGA	8 cut(s)	99, 171, 1249, 2065, 2115, 2814, 2997, 3108
TatI	WGTACW	3 cut(s)	1143, 2091, 2646
TauI	GCSGC	3 cut(s)	289, 2877, 3101
TfiI	GAWTC	6 cut(s)	94, 1011, 2046, 2112, 2660, 3072
Tru1I	TTAA	9 cut(s)	1140, 1305, 1380, 1443, 1575, 1778, 2120, 2181, 2259
Tru9I	TTAA	9 cut(s)	1140, 1305, 1380, 1443, 1575, 1778, 2120, 2181, 2259
TscAI	CASTG	5 cut(s)	1267, 1317, 1894, 2101, 2362
TseFI	GTSAC	4 cut(s)	188, 824, 1256, 1885
TseI	GCWGC	9 cut(s)	106, 248, 878, 1123, 1616, 1619, 1654, 2018, 2363
Tsp45I	GTSAC	4 cut(s)	188, 824, 1256, 1885
TspGWI	ACGGA	1 cut(s)	2681
TspRI	CASTG	5 cut(s)	1267, 1317, 1894, 2101, 2362
Tth111I	GACNNNGTC	2 cut(s)	149, 1245
Vha464I	CTTAAG	1 cut(s)	1139
VpaK11BI	GGWCC	1 cut(s)	2957
VspI	ATTAAT	1 cut(s)	2259
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	4 cut(s)	122, 623, 853, 2127
XbaI	TCTAGA	3 cut(s)	1645, 2185, 2194
XceI	RCATGY	4 cut(s)	1286, 1469, 2633, 3146
XcmI	CCANNNNNNNNNTGG	2 cut(s)	174, 951
XhoI	CTCGAG	1 cut(s)	3107
XmnI	GAANNNNTTC	2 cut(s)	1293, 3045
Zsp2I	ATGCAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.