Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004152

Physical Location & Seq

Genomic Coordinates Reverse (-)

2187519 .. 2188732

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTGATTTAGAATTGGAGCTTGATTTATCCCCAAAACCTATTAAGATCATGGAGCAAAGGTTATCGTTTATCGAGCAGAGGAGTGGTTTTCTTCACAGTCTCATTAACCAGTATGCGAGGGCGAACAAGGAGCTACTGAAACTCAGCACTTCCTTGGACCTTATAAGTCGTCTAAAAGCCACAACCAAGGAGATTAATGGTTTGAGGACTCTGATCGATCAATGTTCTCAAGAAAAAGACATGCTTGATATGGTAACTACCAAATTGATCGATCAAGCCATCCCCAAGGAAAGAAAGCTACACAATTTATTGCTCAAGTCCCTGGTTCCTAAGGATGATGCTGATGAGAGGGATTGCATACTAGAGGTCGGAGCAGGAACTGGTGGGGATGAGGCTTCTTTGTTTGCAATGGACATATTTAAAATATGCATGACTGAATTTATTCCCTTTCTTAAGGTTTCTTTTGTTAGCAAGGACTCCTTTATGTTGGATGGACTTGACAATGCTAGTGCTAGGTTGAACGAGATTATTACTTCTGGTTTAAAGACGGGTAATAATAGTGCAACACCTCCTTGGATGGCTGATGAAGGTGGTCTGCCTTCAGATACTTCTGAACTTCTACCTAAATTGGTAATTGCATTCGGTTTCCTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

220

Amino Acids

24.28

Weight (kDa)

4.9

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01310 AT3G01310 AT3G01310 AT5G15070 AT5G15070 AT5G15070 AT5G15070 AT5G15070 AT5G15070 AT5G15070
fragaria_vesca	FvH4_6g49380 FvH4_6g49380 FvH4_6g49380 FvH4_6g49380
malus_domestica	MD17G1046500.v1.1
prunus_persica	Prupe.3G272600_v2.0.a1 Prupe.3G272600_v2.0.a1 Prupe.3G272600_v2.0.a1 Prupe.3G272600_v2.0.a1
pyrus_communis	pycom06g01750 pycom09g09210 pycom111g03540 pycom17g04140
rosa_chinensis	RchiOBHm_Chr2g0169241
rosa_laevigata	RLG00000021845
rosa_multiflora	Rmu_ssc0000440.1_g000010
rosa_roxburghii	Rroxscaffold_2G00082320
rosa_rugosa	Rorug02G0538500
rosa_samantha	Rh2AG610000 Rh2BG622900 Rh2CG591400 Rh2DG633700
rosa_wichuraiana	Rw2G050580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	22, 136, 301
AluI	AGCT	3 cut(s)	22, 136, 301
Alw26I	GTCTC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	440
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	333
BccI	CCATC	3 cut(s)	290, 488, 574
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	365, 510, 516
BfrI	CTTAAG	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	216, 302
Bsa29I	ATCGAT	2 cut(s)	219, 273
BsaJI	CCNNGG	5 cut(s)	156, 189, 288, 324, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	2 cut(s)	112, 388
Bse21I	CCTNAGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	326
BseCI	ATCGAT	2 cut(s)	219, 273
BseDI	CCNNGG	5 cut(s)	156, 189, 288, 324, 575
BseGI	GGATG	5 cut(s)	282, 343, 397, 499, 585
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	112, 388
BseRI	GAGGAG	1 cut(s)	97
BshVI	ATCGAT	2 cut(s)	219, 273
BslFI	GGGAC	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	641
Bsp143I	GATC	5 cut(s)	48, 216, 220, 270, 274
BspCNI	CTCAG	1 cut(s)	159
BspDI	ATCGAT	2 cut(s)	219, 273
BspLI	GGNNCC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	112, 388
BssECI	CCNNGG	5 cut(s)	156, 189, 288, 324, 575
BssMI	GATC	5 cut(s)	48, 216, 220, 270, 274
BssT1I	CCWWGG	4 cut(s)	156, 189, 288, 575
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	455
BstDEI	CTNAG	2 cut(s)	146, 333
BstF5I	GGATG	5 cut(s)	282, 343, 397, 499, 585
BstKTI	GATC	5 cut(s)	51, 219, 223, 273, 277
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	5 cut(s)	48, 216, 220, 270, 274
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	324
Bsu15I	ATCGAT	2 cut(s)	219, 273
Bsu36I	CCTNAGG	1 cut(s)	333
BsuTUI	ATCGAT	2 cut(s)	219, 273
BtsCI	GGATG	5 cut(s)	282, 343, 397, 499, 585
CaiI	CAGNNNCTG	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	2 cut(s)	219, 273
CviAII	CATG	3 cut(s)	52, 244, 433
CviJI	RGCY	8 cut(s)	5, 22, 136, 182, 281, 301, 398, 584
CviKI_1	RGCY	8 cut(s)	5, 22, 136, 182, 281, 301, 398, 584
DdeI	CTNAG	2 cut(s)	146, 333
DpnI	GATC	5 cut(s)	50, 218, 222, 272, 276
DpnII	GATC	5 cut(s)	48, 216, 220, 270, 274
DraI	TTTAAA	2 cut(s)	424, 546
Eco130I	CCWWGG	4 cut(s)	156, 189, 288, 575
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	588
Eco81I	CCTNAGG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	4 cut(s)	156, 189, 288, 575
EcoT22I	ATGCAT	1 cut(s)	434
ErhI	CCWWGG	4 cut(s)	156, 189, 288, 575
FaeI	CATG	3 cut(s)	55, 247, 436
FalI	AAGNNNNNCTT	4 cut(s)	231, 263, 467, 499
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	51, 243, 432
FokI	GGATG	5 cut(s)	269, 350, 404, 506, 592
FspBI	CTAG	3 cut(s)	365, 510, 516
Hin1II	CATG	3 cut(s)	55, 247, 436
HinfI	GANTC	2 cut(s)	211, 479
HphI	GGTGA	1 cut(s)	646
Hpy188I	TCNGA	4 cut(s)	216, 374, 607, 616
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	584, 612
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	5 cut(s)	360, 410, 432, 566, 641
HpyF3I	CTNAG	2 cut(s)	146, 333
Hsp92II	CATG	3 cut(s)	55, 247, 436
Kzo9I	GATC	5 cut(s)	48, 216, 220, 270, 274
LmnI	GCTCC	4 cut(s)	19, 55, 133, 374
LpnPI	CCDG	6 cut(s)	125, 311, 338, 363, 369, 525
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	365, 510, 516
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	5 cut(s)	50, 218, 222, 272, 276
MboI	GATC	5 cut(s)	48, 216, 220, 270, 274
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	6 cut(s)	14, 266, 307, 440, 629, 636
MlyI	GAGTC	2 cut(s)	205, 473
MmeI	TCCRAC	2 cut(s)	352, 471
MnlI	CCTC	7 cut(s)	75, 114, 201, 345, 361, 388, 582
Mph1103I	ATGCAT	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	6 cut(s)	45, 108, 198, 423, 456, 545
MspCI	CTTAAG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	326
NdeII	GATC	5 cut(s)	48, 216, 220, 270, 274
NlaIII	CATG	3 cut(s)	55, 247, 436
NlaIV	GGNNCC	1 cut(s)	330
NsiI	ATGCAT	1 cut(s)	434
NspI	RCATGY	1 cut(s)	247
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	444
PleI	GAGTC	2 cut(s)	205, 473
PpsI	GAGTC	2 cut(s)	205, 473
PshBI	ATTAAT	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	383
SaqAI	TTAA	6 cut(s)	45, 108, 198, 423, 456, 545
Sau3AI	GATC	5 cut(s)	48, 216, 220, 270, 274
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	205, 473
ScrFI	CCNGG	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	3 cut(s)	231, 317, 455
SmoI	CTYRAG	3 cut(s)	231, 317, 455
Sse9I	AATT	6 cut(s)	14, 266, 307, 440, 629, 636
SspMI	CTAG	3 cut(s)	365, 510, 516
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	4 cut(s)	156, 189, 288, 575
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	75, 219, 273
TasI	AATT	6 cut(s)	14, 266, 307, 440, 629, 636
Tru1I	TTAA	6 cut(s)	45, 108, 198, 423, 456, 545
Tru9I	TTAA	6 cut(s)	45, 108, 198, 423, 456, 545
TspDTI	ATGAA	1 cut(s)	603
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	3 cut(s)	365, 510, 516
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.