Rorug02G0538500

Belongs to the histidine acid phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004152
Physical Location & Seq
Reverse (-)
66716161 .. 66718031
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0538500.1

Sequence Viewer

Length: 636 bp
ATGGGAGTAGAAGAAGGGAGGTTGCAAGTCCCCGAGAAAAAGAATAAAAACTTCAACTCACAGGAGATGACAGTAATGGAACAACATTGTGCCAAGAGTCATGCTAACAAGCGGTCCCTTATAATTGCAACAGTCTCAGCAACAGCAGGATTGCTTACAGTAATTTTTGGCTGCATCTTATGGAAGAAAACTTTGGGAAAGAGAAGGGAGCGTAGAAGGAAGTACGATGAGACTATAAGTAATGTTGGTGCAAAGAATGATGCAGAAAAACCAGTCTATAGTTTAAAGAGCATATCAACTTCTCTGAAACTAATAAACTGGGAGAGGGAGGATTTGGCCCTATTTATAAGTGGATACATGTCACCTGAATATGGACTTTATGGCCAATTTTCTGAGAAGTCAGATGTATTTAGCTATGGGGTGTTGTTGCTAGAGATTGTGAGTGGAAAGAGGAGTGGTAGTTTTTACCATGTTGAACAAGAAGTCACTCTTGCTGGATGGGCATGGGAATTATGGAAAGAAGGTAAAGGAATGGAGGTGATTGATGCATCCATAAGGGAAACATGTCGGCCTCATGAAGCTTTAAGGTGTATCCATGTTGGTTTCTTGTGTCTTCAACAATCTCCTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000827 GO:0000828 GO:0000829 GO:0000832 GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009814 GO:0009817 GO:0009861 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0019222 GO:0019637 GO:0019751 GO:0030554 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032553 GO:0032555 GO:0032559 GO:0032958 GO:0033857 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043647 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046136 GO:0046165 GO:0046173 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0062012 GO:0062013 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0090407 GO:0097159 GO:0097367 GO:0098542 GO:1900150 GO:1900367 GO:1901265 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1904965 GO:1904966 GO:1905034 GO:1905036 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko04070 map04070
Pfam Domains
Protein Families
His_Phos_2

Protein Analysis

211

Amino Acids

23.9

Weight (kDa)

8.53

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 118 - 151 8.1e-07 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 122, 347
AciI CCGC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 382
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 2 cut(s) 357, 563
AgsI TTSAA 3 cut(s) 55, 476, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 414, 581
AluI AGCT 2 cut(s) 414, 581
Alw26I GTCTC 2 cut(s) 139, 224
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 3 cut(s) 336, 382, 569
ApeKI GCWGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 114, 337
AsuHPI GGTGA 2 cut(s) 354, 550
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 114
BalI TGGCCA 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 492
BciVI GTATCC 2 cut(s) 347, 602
BcoDI GTCTC 2 cut(s) 139, 224
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 1 cut(s) 277
BfuI GTATCC 2 cut(s) 347, 602
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 114, 337
BmiI GGNNCC 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 4 cut(s) 183, 250, 535, 557
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 272, 323
BseGI GGATG 2 cut(s) 503, 548
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 150, 384
BseNI ACTGG 2 cut(s) 272, 323
BseRI GAGGAG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 3 cut(s) 338, 384, 571
BsiHKCI CYCGRG 1 cut(s) 32
BslFI GGGAC 2 cut(s) 14, 100
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 2 cut(s) 139, 224
BsmFI GGGAC 2 cut(s) 14, 100
BsnI GGCC 3 cut(s) 338, 384, 571
BsoBI CYCGRG 1 cut(s) 32
BspACI CCGC 1 cut(s) 112
BspANI GGCC 3 cut(s) 338, 384, 571
BspCNI CTCAG 2 cut(s) 149, 385
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 116
BsrI ACTGG 2 cut(s) 272, 323
Bst4CI ACNGT 3 cut(s) 73, 133, 160
BstDEI CTNAG 2 cut(s) 136, 393
BstF5I GGATG 2 cut(s) 503, 548
BstMAI GTCTC 2 cut(s) 139, 224
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNSI RCATGY 2 cut(s) 361, 567
BstSFI CTRYAG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 605
BsuI GTATCC 2 cut(s) 347, 602
BsuRI GGCC 3 cut(s) 338, 384, 571
BtsCI GGATG 2 cut(s) 503, 548
CciI TCATGA 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 114, 337
Csp6I GTAC 1 cut(s) 223
CviAII CATG 7 cut(s) 101, 358, 470, 504, 564, 575, 596
CviJI RGCY 6 cut(s) 171, 338, 384, 414, 571, 581
CviKI_1 RGCY 6 cut(s) 171, 338, 384, 414, 571, 581
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 136, 393
DraI TTTAAA 1 cut(s) 285
EaeI YGGCCR 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 550
FaeI CATG 7 cut(s) 104, 361, 473, 507, 567, 578, 599
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 2 cut(s) 14, 100
FatI CATG 7 cut(s) 100, 357, 469, 503, 563, 574, 595
Fnu4HI GCNGC 1 cut(s) 172
FokI GGATG 2 cut(s) 510, 535
Fsp4HI GCNGC 1 cut(s) 172
FspBI CTAG 1 cut(s) 431
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 3 cut(s) 338, 384, 571
Hin1II CATG 7 cut(s) 104, 361, 473, 507, 567, 578, 599
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 1 cut(s) 97
HphI GGTGA 2 cut(s) 354, 550
Hpy188I TCNGA 3 cut(s) 306, 394, 403
Hpy188III TCNNGA 1 cut(s) 575
HpyAV CCTTC 4 cut(s) 8, 198, 210, 515
HpyCH4III ACNGT 3 cut(s) 73, 133, 160
HpyCH4V TGCA 6 cut(s) 25, 128, 174, 251, 263, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 136, 393
Hsp92II CATG 7 cut(s) 104, 361, 473, 507, 567, 578, 599
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 6 cut(s) 47, 132, 285, 304, 378, 480
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 4 cut(s) 183, 250, 535, 557
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 2 cut(s) 360, 484
MboII GAAGA 3 cut(s) 23, 196, 605
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 4 cut(s) 123, 162, 386, 509
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 6 cut(s) 12, 318, 322, 444, 529, 582
Mox20I TGGCCA 1 cut(s) 384
Mph1103I ATGCAT 1 cut(s) 550
MscI TGGCCA 1 cut(s) 384
MseI TTAA 2 cut(s) 284, 584
Msp20I TGGCCA 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 500
NlaIII CATG 7 cut(s) 104, 361, 473, 507, 567, 578, 599
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 360, 484
NsiI ATGCAT 1 cut(s) 550
NspI RCATGY 2 cut(s) 361, 567
PagI TCATGA 1 cut(s) 574
PciI ACATGT 2 cut(s) 357, 563
PkrI GCNGC 1 cut(s) 173
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PscI ACATGT 2 cut(s) 357, 563
PsiI TTATAA 2 cut(s) 122, 347
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 114, 337
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 284, 584
SatI GCNGC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 114, 337
SchI GAGTC 1 cut(s) 106
SetI ASST 7 cut(s) 23, 367, 416, 526, 540, 583, 590
SfaNI GCATC 4 cut(s) 183, 250, 535, 557
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 1 cut(s) 114
Sse9I AATT 4 cut(s) 123, 162, 386, 509
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 73, 133, 160
TasI AATT 4 cut(s) 123, 162, 386, 509
Tru1I TTAA 2 cut(s) 284, 584
Tru9I TTAA 2 cut(s) 284, 584
TseFI GTSAC 2 cut(s) 360, 484
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 2 cut(s) 360, 484
TspDTI ATGAA 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 2 cut(s) 361, 567
XspI CTAG 1 cut(s) 431
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.