Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014150

Physical Location & Seq

Genomic Coordinates Reverse (-)

3500804 .. 3504423

Gene Structure 3620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1048200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTACGGCTTCGAAGCGATGACCTTCAACATTCACGGCGGGTACTTGGAGGCCATAGTGCGGGGACACCGCTCCGGCCTCCTCACGGCCGCCGATTACAACAATTTGTGCCAGTGCGAGACCCTCGATGATATCAAGATGCACCTTTCTGCCACTGAGTACGGCCCCTACCTCCAAAACGAACCTTCCCCGTTGCATACAACTACAATTGTGGAGAAGTGCACTCTTAAATTGGTTGATGAGTATAAGCACATGCTATGCCAAGCTACAGAACCTTTGTCAACCTTTTTGGAGTATATTACATATGGTCACATGATAGACAATGTTGTCCTGATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAAAAATGCCACCCCTTGGGCATGTTTGACAGCATTGCCACCCTGGCGGTTGCACAGAATATGCGGGAGCTTTACAGATTGGTGCTTGTGGACACACCGCTTGCTCCCTACTTTTCTGAATGTATTACATCCGATGACCTGGATGACATGAACATTGAAATAATGAGGAACACTCTTTACAAGGCATATCTTGAAGACTTTTACAGGTTTTGTCAGAAACTAGGTGGTGCCACAGCAGAGATTATGTCTGACTTACTTGCTTTTGAGGCTGACAGAAGGGCTGTCAATATTACAATAAACAGTATCGGAACTGAGCTTACTCGAGACGATCGCAGGAAGTTGTACTCTAGCTTTGGTTTACTCTATCCCTATGGCCACGAGGAACTTGCTGTTTGTGAGGACATTGATCAGGTCCGTGGTTGCATGGAAAAATATCCTCCTTATCAGTCTATTTTTTCAAAGCTATCCTATGGCGAGAGCCAGCTGCTTGACAAGGCATTTTATGAAGAGGAGGTGAAAAGGCTTTGCCTGGCATTTGAGCAACAGTTCCATTACGGTGTTTTCTTTGCATACATGAGGTTGAGGGAGCAGGAGATTAGAAATCTGATGTGGATATCGGAGTGTGTGGCTCAGAACCAGAAGTCCCGAGTTCACGACAGCGTGGTCTTCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

352

Amino Acids

40.61

Weight (kDa)

4.9

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 344	7.2e-108	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28710 AT3G28715 AT3G28715
fragaria_vesca	FvH4_6g49160
malus_domestica	MD09G1048000.v1.1 MD17G1048200.v1.1
prunus_persica	Prupe.3G271000_v2.0.a1 Prupe.3G271000_v2.0.a1
pyrus_communis	pycom17g04290
rosa_chinensis	RchiOBHm_Chr2g0169031
rosa_laevigata	RLG00000021825
rosa_multiflora	Rmu_ssc0000393.1_g000024
rosa_roxburghii	Rroxscaffold_2G00082520
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607900 Rh2CG589500
rosa_wichuraiana	Rw2G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	326, 1040
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	7 cut(s)	39, 61, 70, 90, 425, 442, 476
AcoI	YGGCCR	2 cut(s)	87, 751
AfaI	GTAC	4 cut(s)	5, 44, 161, 722
AfiI	CCNNNNNNNGG	3 cut(s)	60, 85, 394
AgsI	TTSAA	4 cut(s)	28, 536, 572, 837
AjnI	CCWGG	3 cut(s)	420, 516, 906
AloI	GAACNNNNNNTCC	2 cut(s)	1004, 1036
AluBI	AGCT	6 cut(s)	266, 448, 694, 729, 841, 862
AluI	AGCT	6 cut(s)	266, 448, 694, 729, 841, 862
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	113, 696
Alw44I	GTGCAC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	2 cut(s)	699, 1023
AoxI	GGCC	5 cut(s)	51, 76, 87, 163, 751
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	862
AspS9I	GGNCC	2 cut(s)	164, 790
AsuHPI	GGTGA	1 cut(s)	904
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	2 cut(s)	699, 1023
AvaII	GGWCC	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	605
BauI	CACGAG	1 cut(s)	755
BbsI	GAAGAC	2 cut(s)	579, 1036
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	849
BceAI	ACGGC	4 cut(s)	22, 52, 102, 178
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	3 cut(s)	422, 518, 908
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	113, 696
BfaI	CTAG	2 cut(s)	599, 726
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	90, 863
BlsI	GCNGC	2 cut(s)	91, 864
Bme1390I	CCNGG	3 cut(s)	422, 518, 908
Bme18I	GGWCC	1 cut(s)	790
BmeT110I	CYCGRG	2 cut(s)	699, 1023
BmgT120I	GGNCC	2 cut(s)	164, 790
BmiI	GGNNCC	3 cut(s)	166, 346, 607
BmrFI	CCNGG	3 cut(s)	422, 518, 908
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	579, 1036
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
Bpu14I	TTCGAA	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	393, 420, 793
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 85, 394
Bse1I	ACTGG	2 cut(s)	112, 346
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	3 cut(s)	422, 518, 908
BseDI	CCNNGG	3 cut(s)	393, 420, 793
BseGI	GGATG	2 cut(s)	506, 526
BseLI	CCNNNNNNNGG	3 cut(s)	60, 85, 394
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	147, 681, 1022
BseNI	ACTGG	2 cut(s)	112, 346
BseRI	GAGGAG	2 cut(s)	71, 902
BseSI	GKGCMC	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	849
Bsh1285I	CGRYCG	2 cut(s)	90, 709
BshFI	GGCC	5 cut(s)	53, 78, 89, 165, 753
BshNI	GGYRCC	1 cut(s)	605
BsiEI	CGRYCG	2 cut(s)	90, 709
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	2 cut(s)	699, 1023
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	78, 1006
BslI	CCNNNNNNNGG	3 cut(s)	60, 85, 394
BsmAI	GTCTC	2 cut(s)	113, 696
BsmBI	CGTCTC	1 cut(s)	696
BsmFI	GGGAC	2 cut(s)	78, 1006
BsnI	GGCC	5 cut(s)	53, 78, 89, 165, 753
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	2 cut(s)	699, 1023
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	706, 784
BspACI	CCGC	7 cut(s)	39, 61, 70, 90, 425, 442, 476
BspANI	GGCC	5 cut(s)	53, 78, 89, 165, 753
BspCNI	CTCAG	3 cut(s)	148, 682, 1021
BspLI	GGNNCC	3 cut(s)	166, 346, 607
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	112, 346
BssECI	CCNNGG	3 cut(s)	393, 420, 793
BssMI	GATC	2 cut(s)	706, 784
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	3 cut(s)	422, 518, 908
Bst4CI	ACNGT	4 cut(s)	375, 680, 924, 935
Bst6I	CTCTTC	1 cut(s)	879
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	480, 860
BstDEI	CTNAG	3 cut(s)	156, 690, 1008
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	2 cut(s)	506, 526
BstKTI	GATC	2 cut(s)	709, 787
BstMAI	GTCTC	2 cut(s)	113, 696
BstMBI	GATC	2 cut(s)	706, 784
BstMCI	CGRYCG	2 cut(s)	90, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 644
BstNI	CCWGG	3 cut(s)	422, 518, 908
BstNSI	RCATGY	2 cut(s)	256, 403
BstSCI	CCNGG	3 cut(s)	420, 516, 906
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	849
BstV2I	GAAGAC	2 cut(s)	579, 1036
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	5 cut(s)	53, 78, 89, 165, 753
BtgI	CCRYGG	1 cut(s)	793
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	506, 526
BtsIMutI	CAGTG	2 cut(s)	119, 153
Cac8I	GCNNGC	2 cut(s)	480, 860
CaiI	CAGNNNCTG	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	164, 790
Csp6I	GTAC	4 cut(s)	4, 43, 160, 721
CviAII	CATG	7 cut(s)	253, 313, 353, 400, 526, 802, 952
CviQI	GTAC	4 cut(s)	4, 43, 160, 721
DdeI	CTNAG	3 cut(s)	156, 690, 1008
DpnI	GATC	2 cut(s)	708, 786
DpnII	GATC	2 cut(s)	706, 784
DrdI	GACNNNNNNGTC	2 cut(s)	326, 1040
DseDI	GACNNNNNNGTC	2 cut(s)	326, 1040
EaeI	YGGCCR	2 cut(s)	87, 751
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	2 cut(s)	133, 993
Eco47I	GGWCC	1 cut(s)	790
Eco52I	CGGCCG	1 cut(s)	87
Eco88I	CYCGRG	2 cut(s)	699, 1023
EcoRII	CCWGG	3 cut(s)	420, 516, 906
EcoRV	GATATC	2 cut(s)	133, 993
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	696
FaeI	CATG	7 cut(s)	256, 316, 356, 403, 529, 805, 955
FaqI	GGGAC	2 cut(s)	78, 1006
FatI	CATG	7 cut(s)	252, 312, 352, 399, 525, 801, 951
FauI	CCCGC	3 cut(s)	32, 54, 435
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	90, 863
FokI	GGATG	2 cut(s)	493, 533
Fsp4HI	GCNGC	2 cut(s)	90, 863
FspBI	CTAG	2 cut(s)	599, 726
GluI	GCNGC	2 cut(s)	90, 863
HaeIII	GGCC	5 cut(s)	53, 78, 89, 165, 753
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	7 cut(s)	256, 316, 356, 403, 529, 805, 955
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	5 cut(s)	222, 282, 469, 737, 1030
Hpy188I	TCNGA	8 cut(s)	496, 511, 594, 628, 686, 984, 997, 1011
Hpy188III	TCNNGA	7 cut(s)	136, 331, 368, 569, 701, 1023, 1031
Hpy8I	GTNNAC	5 cut(s)	222, 282, 469, 737, 1030
HpyAV	CCTTC	3 cut(s)	34, 195, 648
HpyCH4III	ACNGT	4 cut(s)	375, 680, 924, 935
HpyCH4V	TGCA	7 cut(s)	142, 196, 222, 352, 431, 801, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 644
HpyF3I	CTNAG	3 cut(s)	156, 690, 1008
Hsp92II	CATG	7 cut(s)	256, 316, 356, 403, 529, 805, 955
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	2 cut(s)	706, 784
LmnI	GCTCC	4 cut(s)	77, 445, 487, 964
Lsp1109I	GCAGC	1 cut(s)	849
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	599, 726
MaeIII	GTNAC	2 cut(s)	308, 337
MalI	GATC	2 cut(s)	708, 786
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	2 cut(s)	706, 784
MboII	GAAGA	3 cut(s)	584, 896, 1036
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	3 cut(s)	103, 207, 230
MluNI	TGGCCA	1 cut(s)	753
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	933
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	1 cut(s)	862
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	422, 518, 908
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	3 cut(s)	422, 518, 908
MwoI	GCNNNNNNNGC	2 cut(s)	422, 644
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	706, 784
NlaIII	CATG	7 cut(s)	256, 316, 356, 403, 529, 805, 955
NlaIV	GGNNCC	3 cut(s)	166, 346, 607
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	256, 403
NspV	TTCGAA	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	699
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	91, 864
Ple19I	CGATCG	1 cut(s)	709
Psp6I	CCWGG	3 cut(s)	420, 516, 906
PspGI	CCWGG	3 cut(s)	420, 516, 906
PspN4I	GGNNCC	3 cut(s)	166, 346, 607
PspPI	GGNCC	2 cut(s)	164, 790
PsrI	GAACNNNNNNTAC	4 cut(s)	539, 571, 679, 711
PstNI	CAGNNNCTG	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	862
RsaI	GTAC	4 cut(s)	5, 44, 161, 722
RsaNI	GTAC	4 cut(s)	4, 43, 160, 721
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	90, 863
Sau3AI	GATC	2 cut(s)	706, 784
Sau96I	GGNCC	2 cut(s)	164, 790
ScrFI	CCNGG	3 cut(s)	422, 518, 908
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	1 cut(s)	790
SlaI	CTCGAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	3 cut(s)	103, 207, 230
SsiI	CCGC	7 cut(s)	39, 61, 70, 90, 425, 442, 476
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	599, 726
StyD4I	CCNGG	3 cut(s)	420, 516, 906
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	4 cut(s)	375, 680, 924, 935
TaqI	TCGA	3 cut(s)	12, 126, 700
TasI	AATT	3 cut(s)	103, 207, 230
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	119, 160
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	862
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	542, 897, 1036
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	2 cut(s)	119, 160
Van91I	CCANNNNNTGG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	790
XceI	RCATGY	2 cut(s)	256, 403
XhoI	CTCGAG	1 cut(s)	699
XspI	CTAG	2 cut(s)	599, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.