Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014150

Physical Location & Seq

Genomic Coordinates Forward (+)

25199577 .. 25203234

Gene Structure 3658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G271000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTACGGCTTCGAGGCAATGACGTTCAACATTCACGGCGGGTACTTGGAGGCCATAGTACGGGGACACCGTGCGGGCCTTCTCACTGCCGCCGATTACAACAATTTGTGCCAGTGCGAGACCCTCGACGATATTAAGATGCACCTTTCTGCCACCGAGTACGGGCCCTACCTCCAAAATGAACCTTCCCCGTTGCATACAACTACAATTGTGGAAAAGTGCACCCTTAAATTGGTTGATGAGTATAAGCACATGCTATGCCAAGCCACAGAGCCCTTGTCAACCTTTTTGGAGTACATTACATATGGCCACATGATAGACAATGTTGTCCTGATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTCTTGGAAAAATGCCACCCTTTGGGCATGTTTGACAGCATTGCCACCCTGGCAGTTGCACAGAATATGCGGGAGCTTTACAGACTGGTGCTTGTTGACACACCACTTGCTCCTTACTTTTCTGAATGTATTACATCTGAGGACCTGGATGATATGAATATTGAAATAATGAGGAATACTCTTTACAAGGCATACCTTGAAGATTTCTACAGGTTTTGTCAGAAACTAGGTGGCGCCACAGCAGAGATCATGTCTGACTTACTTGCTTTTGAGGCTGACAGAAGGGCGGTCAATATTACCATAAATAGTATTGGAACTGAGCTTACTCGAGATGATCGCAGGAAGTTGTATTCTAGCTTTGGTTTGCTTTATCCCTATGGCCATGAAGAACTCGCTGTCTGTGAGGACGTTGATCAGGTCCGTGGTGTCATGGAAAAATATCCTCCATATCAGGCTATCTTTTCAAAACTATCCTATGGTGAGAGTCAGATGCTTGACAAGGCATTTTATGAAGAGGAGGTGAAAAGGCTTTGCTTAGCATTTGAGCAACAGTTCCATTACGGTGTTTTCTTCGCATACATGAGGTTGAGGGAGCAGGAGATCAGAAATCTTATGTGGATATCTGAGTGTGTGGCTCAGAACCAGAAGTCCAGAGTTCATGACAGTGTGGTCTTCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

352

Amino Acids

40.6

Weight (kDa)

4.9

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28710 AT3G28715 AT3G28715
fragaria_vesca	FvH4_6g49160
malus_domestica	MD09G1048000.v1.1 MD17G1048200.v1.1
prunus_persica	Prupe.3G271000_v2.0.a1 Prupe.3G271000_v2.0.a1
pyrus_communis	pycom17g04290
rosa_chinensis	RchiOBHm_Chr2g0169031
rosa_laevigata	RLG00000021825
rosa_multiflora	Rmu_ssc0000393.1_g000024
rosa_roxburghii	Rroxscaffold_2G00082520
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607900 Rh2CG589500
rosa_wichuraiana	Rw2G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	326, 1040
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	394
AciI	CCGC	5 cut(s)	39, 74, 90, 442, 659
AcoI	YGGCCR	2 cut(s)	307, 751
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	5 cut(s)	5, 44, 60, 161, 296
AfiI	CCNNNNNNNGG	4 cut(s)	60, 162, 232, 394
AgsI	TTSAA	4 cut(s)	28, 536, 572, 837
AjnI	CCWGG	2 cut(s)	420, 516
AloI	GAACNNNNNNTCC	2 cut(s)	1004, 1036
AluBI	AGCT	3 cut(s)	448, 694, 729
AluI	AGCT	3 cut(s)	448, 694, 729
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	699
AoxI	GGCC	5 cut(s)	51, 76, 164, 307, 751
ApaI	GGGCCC	1 cut(s)	168
ApaLI	GTGCAC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	5 cut(s)	76, 164, 165, 514, 790
AsuHPI	GGTGA	2 cut(s)	863, 904
AvaI	CYCGRG	1 cut(s)	699
AvaII	GGWCC	2 cut(s)	514, 790
BaeGI	GKGCMC	2 cut(s)	168, 224
BalI	TGGCCA	2 cut(s)	309, 753
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	2 cut(s)	168, 276
BbsI	GAAGAC	1 cut(s)	1036
Bbv12I	GWGCWC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	22, 52
BciT130I	CCWGG	2 cut(s)	422, 518
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	599, 726
BfmI	CTRYAG	1 cut(s)	580
BfoI	RGCGCY	1 cut(s)	609
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	90
BlpI	GCTNAGC	1 cut(s)	907
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	422, 518
Bme18I	GGWCC	2 cut(s)	514, 790
BmeT110I	CYCGRG	1 cut(s)	699
BmgT120I	GGNCC	5 cut(s)	76, 164, 165, 514, 790
BmiI	GGNNCC	3 cut(s)	166, 346, 607
BmrFI	CCNGG	2 cut(s)	422, 518
BmsI	GCATC	2 cut(s)	129, 852
BpiI	GAAGAC	1 cut(s)	1036
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
Bpu1102I	GCTNAGC	1 cut(s)	907
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	420, 793
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 162, 232, 394
Bse1I	ACTGG	3 cut(s)	112, 346, 462
Bse3DI	GCAATG	2 cut(s)	24, 411
BseBI	CCWGG	2 cut(s)	422, 518
BseDI	CCNNGG	2 cut(s)	420, 793
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	4 cut(s)	60, 162, 232, 394
BseMI	GCAATG	2 cut(s)	24, 411
BseMII	CTCAG	4 cut(s)	501, 681, 987, 1022
BseNI	ACTGG	3 cut(s)	112, 346, 462
BseRI	GAGGAG	1 cut(s)	902
BseSI	GKGCMC	2 cut(s)	168, 224
BshFI	GGCC	5 cut(s)	53, 78, 166, 309, 753
BshNI	GGYRCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	699
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	4 cut(s)	60, 162, 232, 394
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	5 cut(s)	53, 78, 166, 309, 753
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	699
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	168, 224, 276
Bsp143I	GATC	4 cut(s)	618, 706, 784, 972
Bsp1720I	GCTNAGC	1 cut(s)	907
BspACI	CCGC	5 cut(s)	39, 74, 90, 442, 659
BspANI	GGCC	5 cut(s)	53, 78, 166, 309, 753
BspCNI	CTCAG	4 cut(s)	502, 682, 988, 1021
BspHI	TCATGA	1 cut(s)	1030
BspLI	GGNNCC	3 cut(s)	166, 346, 607
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	24, 411
BsrI	ACTGG	3 cut(s)	112, 346, 462
BssECI	CCNNGG	2 cut(s)	420, 793
BssMI	GATC	4 cut(s)	618, 706, 784, 972
BssNI	GRCGYC	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	422, 518
Bst4CI	ACNGT	4 cut(s)	71, 924, 935, 1037
Bst6I	CTCTTC	1 cut(s)	879
BstACI	GRCGYC	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	5 cut(s)	510, 690, 907, 996, 1008
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	1 cut(s)	526
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	4 cut(s)	621, 709, 787, 975
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	4 cut(s)	618, 706, 784, 972
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 644
BstNI	CCWGG	2 cut(s)	422, 518
BstNSI	RCATGY	2 cut(s)	256, 403
BstSCI	CCNGG	2 cut(s)	420, 516
BstSFI	CTRYAG	1 cut(s)	580
BstSLI	GKGCMC	2 cut(s)	168, 224
BstV2I	GAAGAC	1 cut(s)	1036
BsuRI	GGCC	5 cut(s)	53, 78, 166, 309, 753
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	84, 119, 1042
Cac8I	GCNNGC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	1030
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	5 cut(s)	76, 164, 165, 514, 790
Csp6I	GTAC	5 cut(s)	4, 43, 59, 160, 295
CviAII	CATG	9 cut(s)	253, 313, 353, 400, 622, 755, 802, 952, 1031
CviQI	GTAC	5 cut(s)	4, 43, 59, 160, 295
DdeI	CTNAG	5 cut(s)	510, 690, 907, 996, 1008
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	4 cut(s)	620, 708, 786, 974
DpnII	GATC	4 cut(s)	618, 706, 784, 972
DrdI	GACNNNNNNGTC	2 cut(s)	326, 1040
DseDI	GACNNNNNNGTC	2 cut(s)	326, 1040
EaeI	YGGCCR	2 cut(s)	307, 751
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Eco24I	GRGCYC	2 cut(s)	168, 276
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	993
Eco47I	GGWCC	2 cut(s)	514, 790
Eco88I	CYCGRG	1 cut(s)	699
EcoO109I	RGGNCCY	2 cut(s)	165, 514
EcoRII	CCWGG	2 cut(s)	420, 516
EcoRV	GATATC	1 cut(s)	993
EcoT38I	GRGCYC	2 cut(s)	168, 276
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
FaeI	CATG	9 cut(s)	256, 316, 356, 403, 625, 758, 805, 955, 1034
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	9 cut(s)	252, 312, 352, 399, 621, 754, 801, 951, 1030
FauI	CCCGC	3 cut(s)	32, 67, 435
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	2 cut(s)	168, 276
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	599, 726
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	5 cut(s)	53, 78, 166, 309, 753
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	9 cut(s)	256, 316, 356, 403, 625, 758, 805, 955, 1034
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HincII	GTYRAC	2 cut(s)	282, 469
HindII	GTYRAC	2 cut(s)	282, 469
HinfI	GANTC	1 cut(s)	856
HphI	GGTGA	2 cut(s)	863, 904
Hpy166II	GTNNAC	3 cut(s)	222, 282, 469
Hpy188I	TCNGA	8 cut(s)	496, 511, 594, 628, 861, 977, 997, 1011
Hpy188III	TCNNGA	5 cut(s)	331, 368, 701, 1023, 1031
Hpy8I	GTNNAC	3 cut(s)	222, 282, 469
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	89, 195, 648
HpyCH4III	ACNGT	4 cut(s)	71, 924, 935, 1037
HpyCH4IV	ACGT	2 cut(s)	23, 780
HpyCH4V	TGCA	5 cut(s)	142, 196, 222, 352, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 644
HpyF3I	CTNAG	5 cut(s)	510, 690, 907, 996, 1008
HpySE526I	ACGT	2 cut(s)	23, 780
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	9 cut(s)	256, 316, 356, 403, 625, 758, 805, 955, 1034
HspAI	GCGC	1 cut(s)	606
KasI	GGCGCC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	618, 706, 784, 972
LmnI	GCTCC	3 cut(s)	445, 487, 964
LweI	GCATC	2 cut(s)	129, 852
MaeI	CTAG	2 cut(s)	599, 726
MaeII	ACGT	2 cut(s)	23, 780
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	620, 708, 786, 974
MboI	GATC	4 cut(s)	618, 706, 784, 972
MboII	GAAGA	5 cut(s)	584, 770, 896, 934, 1036
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	168, 224, 276
MlsI	TGGCCA	2 cut(s)	309, 753
MluCI	AATT	3 cut(s)	103, 207, 230
MluNI	TGGCCA	2 cut(s)	309, 753
Mly113I	GGCGCC	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	865
Mox20I	TGGCCA	2 cut(s)	309, 753
MscI	TGGCCA	2 cut(s)	309, 753
MseI	TTAA	2 cut(s)	135, 228
MslI	CAYNNNNRTG	2 cut(s)	933, 1035
Msp20I	TGGCCA	2 cut(s)	309, 753
MspR9I	CCNGG	2 cut(s)	422, 518
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	422, 518
MwoI	GCNNNNNNNGC	2 cut(s)	422, 644
NarI	GGCGCC	1 cut(s)	606
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	4 cut(s)	618, 706, 784, 972
NlaIII	CATG	9 cut(s)	256, 316, 356, 403, 625, 758, 805, 955, 1034
NlaIV	GGNNCC	3 cut(s)	166, 346, 607
NspI	RCATGY	2 cut(s)	256, 403
PaeR7I	CTCGAG	1 cut(s)	699
PagI	TCATGA	1 cut(s)	1030
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	864
PluTI	GGCGCC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	864
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	420, 516
PspGI	CCWGG	2 cut(s)	420, 516
PspN4I	GGNNCC	3 cut(s)	166, 346, 607
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	5 cut(s)	76, 164, 165, 514, 790
PspPPI	RGGWCCY	1 cut(s)	514
PsrI	GAACNNNNNNTAC	2 cut(s)	679, 711
RsaI	GTAC	5 cut(s)	5, 44, 60, 161, 296
RsaNI	GTAC	5 cut(s)	4, 43, 59, 160, 295
RseI	CAYNNNNRTG	2 cut(s)	933, 1035
SaqAI	TTAA	2 cut(s)	135, 228
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	618, 706, 784, 972
Sau96I	GGNCC	5 cut(s)	76, 164, 165, 514, 790
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	2 cut(s)	422, 518
SduI	GDGCHC	3 cut(s)	168, 224, 276
SfaNI	GCATC	2 cut(s)	129, 852
SfcI	CTRYAG	1 cut(s)	580
SfoI	GGCGCC	1 cut(s)	607
Sfr274I	CTCGAG	1 cut(s)	699
SinI	GGWCC	2 cut(s)	514, 790
SlaI	CTCGAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	2 cut(s)	933, 1035
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	3 cut(s)	103, 207, 230
SsiI	CCGC	5 cut(s)	39, 74, 90, 442, 659
SspDI	GGCGCC	1 cut(s)	605
SspI	AATATT	2 cut(s)	532, 667
SspMI	CTAG	2 cut(s)	599, 726
StyD4I	CCNGG	2 cut(s)	420, 516
TaaI	ACNGT	4 cut(s)	71, 924, 935, 1037
TaiI	ACGT	2 cut(s)	26, 783
TaqI	TCGA	3 cut(s)	12, 126, 700
TasI	AATT	3 cut(s)	103, 207, 230
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	135, 228
Tru9I	TTAA	2 cut(s)	135, 228
TscAI	CASTG	3 cut(s)	91, 119, 1042
TspDTI	ATGAA	6 cut(s)	195, 542, 771, 897, 1019, 1036
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	3 cut(s)	91, 119, 1042
Van91I	CCANNNNNTGG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	514, 790
XceI	RCATGY	2 cut(s)	256, 403
XhoI	CTCGAG	1 cut(s)	699
XspI	CTAG	2 cut(s)	599, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.