Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014150

Physical Location & Seq

Genomic Coordinates Forward (+)

78631948 .. 78635381

Gene Structure 3434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTACGGCTTCGAAGCGATGACCTTCAACATTCACGGCGGCTACTTGGAGGCCATCGTCCGGGGACACCGTGCCGGTCTTCTCACCGCCGCTGATTACAACAACCTCTGCCAGTGCGAGACCCTCGACGACATTAAGATGCACCTCTCTGCCACCGAGTACGGCCCCTACCTCCAAAACGAACCATCTCCATTGCATACAACTACCATTGTGGAAAAGTGCACTCTTAAGTTGGTTGATGAGTACAAGCACATGCTATGCCAAGCCACAGAGCCCTTGTCAACATTTTTGGAGTATATCACATATGGTCATATGATAGACAATGTTGTCCTGATCGTTACTGGAACTTTGCACGAGAGAGATGTCCAGGAACTATTGGAAAAATGCCACCCTTTGGGCATGTTTGACAGCATTGCTACCCTGGCAGTTGCACAGAATATGCGGGAGCTTTACAGATTGGTGCTTGTTGACACACCTCTTGCTCCTTACTTTTCTGAGTGCATTACATCAGAGGATCTGGATGACATGAATATTGAAATCATGAGGAATACTCTTTACAAGGCATACCTTGAAGACTTTTACAGGTTTTGTCAGAAACTCGGTGGTGCCACAGCAGAGATCATGTCTGACTTACTTGCTTTTGAAGCTGACAGAAGGGCTGTCAATATTACCATAAACAGCATTGGAACAGAGCTTACTCGAGATGATCGCAAGAAATTGTATTCTAGCTTTGGCTTACTCTATCCCTATGGCCACGAGGAACTTGCTATCTGTGAGGACATTGATCAGGTTCGTGGTGTCATGGAAAAGTATCCTCCTTATCAGTCTATATTTTCAAAACTATCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAGGAGGTGAAAAGGCTTTGTTTAGCATTTGAGCAACAGTTTCATTATGGCGTTTTCTTTGCGTACATGAGGTTGAGGGAGCAGGAGATCAGAAATCTGATGTGGATATCCGAGTGTGTGGCTCAGAACCAGAAGTCCAGAGTTCATGACAGCGTGGTCTTCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

352

Amino Acids

40.61

Weight (kDa)

4.9

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_AC39	PF01992	16 - 344	2.1e-108	ATP synthase (C/AC39) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28710 AT3G28715 AT3G28715
fragaria_vesca	FvH4_6g49160
malus_domestica	MD09G1048000.v1.1 MD17G1048200.v1.1
prunus_persica	Prupe.3G271000_v2.0.a1 Prupe.3G271000_v2.0.a1
pyrus_communis	pycom17g04290
rosa_chinensis	RchiOBHm_Chr2g0169031
rosa_laevigata	RLG00000021825
rosa_multiflora	Rmu_ssc0000393.1_g000024
rosa_roxburghii	Rroxscaffold_2G00082520
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607900 Rh2CG589500
rosa_wichuraiana	Rw2G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	326, 1040
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	394
AciI	CCGC	4 cut(s)	39, 87, 90, 442
AclWI	GGATC	1 cut(s)	522
AcoI	YGGCCR	1 cut(s)	751
AfaI	GTAC	4 cut(s)	5, 161, 245, 950
AfiI	CCNNNNNNNGG	2 cut(s)	60, 394
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	5 cut(s)	28, 536, 572, 644, 837
AjnI	CCWGG	2 cut(s)	366, 420
AloI	GAACNNNNNNTCC	2 cut(s)	1004, 1036
AluBI	AGCT	4 cut(s)	448, 647, 694, 729
AluI	AGCT	4 cut(s)	448, 647, 694, 729
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	522
Ama87I	CYCGRG	1 cut(s)	699
AoxI	GGCC	3 cut(s)	51, 163, 751
ApaLI	GTGCAC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	76, 904
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	699
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	276
BauI	CACGAG	2 cut(s)	353, 755
BbsI	GAAGAC	3 cut(s)	71, 579, 1036
Bbv12I	GWGCWC	1 cut(s)	224
BccI	CCATC	2 cut(s)	62, 193
BceAI	ACGGC	3 cut(s)	22, 52, 178
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	2 cut(s)	368, 422
BciVI	GTATCC	1 cut(s)	822
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	2 cut(s)	40, 90
BlsI	GCNGC	2 cut(s)	41, 91
Bme1390I	CCNGG	3 cut(s)	62, 368, 422
BmeT110I	CYCGRG	1 cut(s)	699
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	166, 607
BmrFI	CCNGG	3 cut(s)	62, 368, 422
BmsI	GCATC	2 cut(s)	129, 852
BpiI	GAAGAC	3 cut(s)	71, 579, 1036
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
Bpu14I	TTCGAA	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	61, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 394
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	112, 346
Bse3DI	GCAATG	2 cut(s)	191, 411
BseBI	CCWGG	2 cut(s)	368, 422
BseDI	CCNNGG	2 cut(s)	61, 420
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	60, 394
BseMI	GCAATG	2 cut(s)	191, 411
BseMII	CTCAG	2 cut(s)	486, 1022
BseNI	ACTGG	2 cut(s)	112, 346
BseRI	GAGGAG	1 cut(s)	902
BseSI	GKGCMC	1 cut(s)	224
BshFI	GGCC	3 cut(s)	53, 165, 753
BshNI	GGYRCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	699
BsiSI	CCGG	2 cut(s)	61, 75
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	60, 394
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	53, 165, 753
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	699
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	224, 276
Bsp143I	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
BspACI	CCGC	4 cut(s)	39, 87, 90, 442
BspANI	GGCC	3 cut(s)	53, 165, 753
BspCNI	CTCAG	2 cut(s)	487, 1021
BspHI	TCATGA	2 cut(s)	540, 1030
BspLI	GGNNCC	2 cut(s)	166, 607
BspPI	GGATC	1 cut(s)	522
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	605
BspTI	CTTAAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	191, 411
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	112, 346
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	61, 420
BssMI	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
BssSI	CACGAG	2 cut(s)	353, 755
Bst2BI	CACGAG	2 cut(s)	353, 755
Bst2UI	CCWGG	2 cut(s)	368, 422
Bst4CI	ACNGT	2 cut(s)	71, 924
Bst6I	CTCTTC	1 cut(s)	879
BstAFI	CTTAAG	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	495, 1008
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	6 cut(s)	336, 517, 621, 709, 787, 975
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 644
BstNI	CCWGG	2 cut(s)	368, 422
BstNSI	RCATGY	2 cut(s)	256, 403
BstSCI	CCNGG	3 cut(s)	60, 366, 420
BstSLI	GKGCMC	1 cut(s)	224
BstV2I	GAAGAC	3 cut(s)	71, 579, 1036
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	822
BsuRI	GGCC	3 cut(s)	53, 165, 753
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	119
CciI	TCATGA	2 cut(s)	540, 1030
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	4 cut(s)	4, 160, 244, 949
CviAII	CATG	8 cut(s)	253, 400, 526, 541, 622, 802, 952, 1031
CviQI	GTAC	4 cut(s)	4, 160, 244, 949
DdeI	CTNAG	2 cut(s)	495, 1008
DpnI	GATC	6 cut(s)	335, 516, 620, 708, 786, 974
DpnII	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
DrdI	GACNNNNNNGTC	2 cut(s)	326, 1040
DseDI	GACNNNNNNGTC	2 cut(s)	326, 1040
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	366, 420
EcoRV	GATATC	1 cut(s)	993
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	8 cut(s)	256, 403, 529, 544, 625, 805, 955, 1034
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	8 cut(s)	252, 399, 525, 540, 621, 801, 951, 1030
FauI	CCCGC	1 cut(s)	435
FauNDI	CATATG	2 cut(s)	304, 312
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	40, 90
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	40, 90
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	2 cut(s)	40, 90
HaeIII	GGCC	3 cut(s)	53, 165, 753
HapII	CCGG	2 cut(s)	61, 75
Hin1II	CATG	8 cut(s)	256, 403, 529, 544, 625, 805, 955, 1034
HincII	GTYRAC	2 cut(s)	282, 469
HindII	GTYRAC	2 cut(s)	282, 469
HpaII	CCGG	2 cut(s)	61, 75
HphI	GGTGA	2 cut(s)	76, 904
Hpy166II	GTNNAC	3 cut(s)	222, 282, 469
Hpy188I	TCNGA	8 cut(s)	496, 511, 594, 628, 977, 984, 997, 1011
Hpy188III	TCNNGA	6 cut(s)	331, 518, 541, 701, 1023, 1031
Hpy8I	GTNNAC	3 cut(s)	222, 282, 469
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	34, 648
HpyCH4III	ACNGT	2 cut(s)	71, 924
HpyCH4V	TGCA	6 cut(s)	142, 196, 222, 352, 431, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 644
HpyF3I	CTNAG	2 cut(s)	495, 1008
Hsp92II	CATG	8 cut(s)	256, 403, 529, 544, 625, 805, 955, 1034
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
LmnI	GCTCC	3 cut(s)	445, 487, 964
LweI	GCATC	2 cut(s)	129, 852
MaeI	CTAG	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	6 cut(s)	335, 516, 620, 708, 786, 974
MboI	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
MboII	GAAGA	4 cut(s)	71, 584, 896, 1036
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	224, 276
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	1 cut(s)	716
MluNI	TGGCCA	1 cut(s)	753
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	2 cut(s)	135, 228
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	2 cut(s)	61, 75
MspR9I	CCNGG	3 cut(s)	62, 368, 422
MvaI	CCWGG	2 cut(s)	368, 422
MwoI	GCNNNNNNNGC	2 cut(s)	422, 644
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	2 cut(s)	304, 312
NdeII	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
NlaIII	CATG	8 cut(s)	256, 403, 529, 544, 625, 805, 955, 1034
NlaIV	GGNNCC	2 cut(s)	166, 607
NspI	RCATGY	2 cut(s)	256, 403
NspV	TTCGAA	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	699
PagI	TCATGA	2 cut(s)	540, 1030
PflMI	CCANNNNNTGG	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	41, 91
Psp6I	CCWGG	2 cut(s)	366, 420
PspGI	CCWGG	2 cut(s)	366, 420
PspN4I	GGNNCC	2 cut(s)	166, 607
PspPI	GGNCC	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	679, 711
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	4 cut(s)	5, 161, 245, 950
RsaNI	GTAC	4 cut(s)	4, 160, 244, 949
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	135, 228
SatI	GCNGC	2 cut(s)	40, 90
Sau3AI	GATC	6 cut(s)	333, 514, 618, 706, 784, 972
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	62, 368, 422
SduI	GDGCHC	2 cut(s)	224, 276
SfaNI	GCATC	2 cut(s)	129, 852
Sfr274I	CTCGAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	2 cut(s)	227, 699
SmoI	CTYRAG	2 cut(s)	227, 699
Sse9I	AATT	1 cut(s)	716
SsiI	CCGC	4 cut(s)	39, 87, 90, 442
SspI	AATATT	2 cut(s)	532, 667
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	3 cut(s)	60, 366, 420
TaaI	ACNGT	2 cut(s)	71, 924
TaqI	TCGA	3 cut(s)	12, 126, 700
TasI	AATT	1 cut(s)	716
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	42, 92
Tru1I	TTAA	2 cut(s)	135, 228
Tru9I	TTAA	2 cut(s)	135, 228
TscAI	CASTG	1 cut(s)	119
TspDTI	ATGAA	5 cut(s)	542, 897, 917, 1019, 1036
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	220
XceI	RCATGY	2 cut(s)	256, 403
XhoI	CTCGAG	1 cut(s)	699
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.