Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014150

Physical Location & Seq

Genomic Coordinates Reverse (-)

2927135 .. 2930158

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTACGGCTTCGAAGCGATGACCTTCAACATTCACGGCGGGTACTTGGAGGCCATAGTGCGGGGACACCGCTCCGGCCTCCTCACCGCCGCCGATTACAACAATTTGTGCCAGTGCGAGACCCTCGACGATATCAAGATGCACCTTTCTGCCACTGAGTACGGCCCCTACCTCCAAAACGAACCTTCCCCATTGCATACAACTACAATTGTGGAGAAGTGCACTCTTAAATTGGTTGATGAGTATAAGCACATGCTATGCCAAGCTACAGAGCCCTTGTCAACCTTTTTGGAGTATATTACATATGGTCACATGATAGACAATGTTGTCCTGATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAAAAATGCCACCCCTTGGGCATGTTTGACAGCATTGCCACCCTGGCGGTTGCACAGAATATGCGGGAGCTTTACAGATTGGTGCTTGTTGACACACCACTTGCTCCCTACTTTTCTGAATGTATTACATCCGATGACCTGGATGACATGAACATTGAAATAATGAGGAACACTCTTTACAAGGCATACCTTGAAGACTTTTACAGGTTTTGTCAGAAACTAGGTGGTGCCACAGCAGAGATTATGTCTGACTTACTTGCTTTTGAGGCTGACAGAAGGGCTGTCAATATTACAATAAACAGTATCGGAACTGAGCTTACTCGAGACGATCGCTGGAAGTTGTACTCTAGCTTTGGTTTACTCTATCCCTATGGCCACGAGGAACTTGCTGTTTGTGAGGACATTGATCAGGTTCGTGGTTGTATGGAAAAATATCCCCCTTATCAGTCGATTTTTTCAAAACTATCCTATGGTGAGAGCCAGCTACTGGACAAGGCATTTTATGAAGAGGAGGTGAAAAGGCTTTGCCTGGCATTTGAGCAACAGTTCCATTACGGTGTTTTCTTTGCATACATGAGGTTGAGGGAGCAGGAGATCAGAAATCTGATGTGGATATCGGAGTGTGTGGCGCAGAACCAGAAGTCCCGAGTTCACGACAGCGTGGTCTTCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

352

Amino Acids

40.64

Weight (kDa)

4.85

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28710 AT3G28715 AT3G28715
fragaria_vesca	FvH4_6g49160
malus_domestica	MD09G1048000.v1.1 MD17G1048200.v1.1
prunus_persica	Prupe.3G271000_v2.0.a1 Prupe.3G271000_v2.0.a1
pyrus_communis	pycom17g04290
rosa_chinensis	RchiOBHm_Chr2g0169031
rosa_laevigata	RLG00000021825
rosa_multiflora	Rmu_ssc0000393.1_g000024
rosa_roxburghii	Rroxscaffold_2G00082520
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607900 Rh2CG589500
rosa_wichuraiana	Rw2G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	326, 1040
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	2 cut(s)	394, 865
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	7 cut(s)	39, 61, 70, 87, 90, 425, 442
AcoI	YGGCCR	1 cut(s)	751
AfaI	GTAC	4 cut(s)	5, 44, 161, 722
AfiI	CCNNNNNNNGG	3 cut(s)	60, 394, 865
AgsI	TTSAA	4 cut(s)	28, 536, 572, 837
AjnI	CCWGG	3 cut(s)	420, 516, 906
AloI	GAACNNNNNNTCC	2 cut(s)	1004, 1036
AluBI	AGCT	5 cut(s)	266, 448, 694, 729, 862
AluI	AGCT	5 cut(s)	266, 448, 694, 729, 862
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	113, 696
Alw44I	GTGCAC	1 cut(s)	220
AlwNI	CAGNNNCTG	2 cut(s)	373, 865
Ama87I	CYCGRG	2 cut(s)	699, 1023
AoxI	GGCC	4 cut(s)	51, 76, 163, 751
ApaLI	GTGCAC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	76, 863, 904
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	2 cut(s)	699, 1023
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	276
BauI	CACGAG	1 cut(s)	755
BbsI	GAAGAC	2 cut(s)	579, 1036
Bbv12I	GWGCWC	1 cut(s)	224
BceAI	ACGGC	3 cut(s)	22, 52, 178
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	3 cut(s)	422, 518, 908
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	2 cut(s)	113, 696
BfaI	CTAG	2 cut(s)	599, 726
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	3 cut(s)	422, 518, 908
BmeT110I	CYCGRG	2 cut(s)	699, 1023
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	3 cut(s)	166, 346, 607
BmrFI	CCNGG	3 cut(s)	422, 518, 908
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	579, 1036
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
Bpu14I	TTCGAA	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	393, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 394, 865
Bse1I	ACTGG	3 cut(s)	112, 346, 870
Bse3DI	GCAATG	2 cut(s)	191, 411
BseBI	CCWGG	3 cut(s)	422, 518, 908
BseDI	CCNNGG	2 cut(s)	393, 420
BseGI	GGATG	2 cut(s)	506, 526
BseLI	CCNNNNNNNGG	3 cut(s)	60, 394, 865
BseMI	GCAATG	2 cut(s)	191, 411
BseMII	CTCAG	2 cut(s)	147, 681
BseNI	ACTGG	3 cut(s)	112, 346, 870
BseRI	GAGGAG	2 cut(s)	71, 902
BseSI	GKGCMC	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	709
BshFI	GGCC	4 cut(s)	53, 78, 165, 753
BshNI	GGYRCC	1 cut(s)	605
BsiEI	CGRYCG	1 cut(s)	709
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	2 cut(s)	699, 1023
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	78, 1006
BslI	CCNNNNNNNGG	3 cut(s)	60, 394, 865
BsmAI	GTCTC	2 cut(s)	113, 696
BsmBI	CGTCTC	1 cut(s)	696
BsmFI	GGGAC	2 cut(s)	78, 1006
BsnI	GGCC	4 cut(s)	53, 78, 165, 753
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	2 cut(s)	699, 1023
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	224, 276
Bsp143I	GATC	3 cut(s)	706, 784, 972
BspACI	CCGC	7 cut(s)	39, 61, 70, 87, 90, 425, 442
BspANI	GGCC	4 cut(s)	53, 78, 165, 753
BspCNI	CTCAG	2 cut(s)	148, 682
BspLI	GGNNCC	3 cut(s)	166, 346, 607
BspT104I	TTCGAA	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	605
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	191, 411
BsrI	ACTGG	3 cut(s)	112, 346, 870
BssECI	CCNNGG	2 cut(s)	393, 420
BssMI	GATC	3 cut(s)	706, 784, 972
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	755
Bst2UI	CCWGG	3 cut(s)	422, 518, 908
Bst4CI	ACNGT	4 cut(s)	375, 680, 924, 935
Bst6I	CTCTTC	1 cut(s)	879
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	860
BstDEI	CTNAG	2 cut(s)	156, 690
BstF5I	GGATG	2 cut(s)	506, 526
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	3 cut(s)	709, 787, 975
BstMAI	GTCTC	2 cut(s)	113, 696
BstMBI	GATC	3 cut(s)	706, 784, 972
BstMCI	CGRYCG	1 cut(s)	709
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 644
BstNI	CCWGG	3 cut(s)	422, 518, 908
BstNSI	RCATGY	2 cut(s)	256, 403
BstSCI	CCNGG	3 cut(s)	420, 516, 906
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	224
BstV2I	GAAGAC	2 cut(s)	579, 1036
BsuRI	GGCC	4 cut(s)	53, 78, 165, 753
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	506, 526
BtsIMutI	CAGTG	2 cut(s)	119, 153
Cac8I	GCNNGC	1 cut(s)	860
CaiI	CAGNNNCTG	2 cut(s)	373, 865
CfoI	GCGC	1 cut(s)	1009
Cfr13I	GGNCC	1 cut(s)	164
Csp6I	GTAC	4 cut(s)	4, 43, 160, 721
CviAII	CATG	6 cut(s)	253, 313, 353, 400, 526, 952
CviQI	GTAC	4 cut(s)	4, 43, 160, 721
DdeI	CTNAG	2 cut(s)	156, 690
DpnI	GATC	3 cut(s)	708, 786, 974
DpnII	GATC	3 cut(s)	706, 784, 972
DrdI	GACNNNNNNGTC	2 cut(s)	326, 1040
DseDI	GACNNNNNNGTC	2 cut(s)	326, 1040
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	879
EarI	CTCTTC	1 cut(s)	879
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	2 cut(s)	133, 993
Eco88I	CYCGRG	2 cut(s)	699, 1023
EcoRII	CCWGG	3 cut(s)	420, 516, 906
EcoRV	GATATC	2 cut(s)	133, 993
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	696
FaeI	CATG	6 cut(s)	256, 316, 356, 403, 529, 955
FaqI	GGGAC	2 cut(s)	78, 1006
FatI	CATG	6 cut(s)	252, 312, 352, 399, 525, 951
FauI	CCCGC	3 cut(s)	32, 54, 435
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	493, 533
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	599, 726
GlaI	GCGC	1 cut(s)	1008
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	4 cut(s)	53, 78, 165, 753
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	1009
Hin1II	CATG	6 cut(s)	256, 316, 356, 403, 529, 955
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HincII	GTYRAC	2 cut(s)	282, 469
HindII	GTYRAC	2 cut(s)	282, 469
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	76, 863, 904
Hpy166II	GTNNAC	5 cut(s)	222, 282, 469, 737, 1030
Hpy188I	TCNGA	8 cut(s)	496, 511, 594, 628, 686, 977, 984, 997
Hpy188III	TCNNGA	6 cut(s)	136, 331, 368, 701, 1023, 1031
Hpy8I	GTNNAC	5 cut(s)	222, 282, 469, 737, 1030
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	34, 195, 648
HpyCH4III	ACNGT	4 cut(s)	375, 680, 924, 935
HpyCH4V	TGCA	6 cut(s)	142, 196, 222, 352, 431, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 644
HpyF3I	CTNAG	2 cut(s)	156, 690
Hsp92II	CATG	6 cut(s)	256, 316, 356, 403, 529, 955
HspAI	GCGC	1 cut(s)	1007
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	706, 784, 972
LmnI	GCTCC	4 cut(s)	77, 445, 487, 964
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	599, 726
MaeIII	GTNAC	2 cut(s)	308, 337
MalI	GATC	3 cut(s)	708, 786, 974
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	3 cut(s)	706, 784, 972
MboII	GAAGA	3 cut(s)	584, 896, 1036
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	224, 276
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	3 cut(s)	103, 207, 230
MluNI	TGGCCA	1 cut(s)	753
MmeI	TCCRAC	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	933
Msp20I	TGGCCA	1 cut(s)	753
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	422, 518, 908
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	3 cut(s)	422, 518, 908
MwoI	GCNNNNNNNGC	2 cut(s)	422, 644
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	706, 784, 972
NlaIII	CATG	6 cut(s)	256, 316, 356, 403, 529, 955
NlaIV	GGNNCC	3 cut(s)	166, 346, 607
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	2 cut(s)	256, 403
NspV	TTCGAA	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	699
PflMI	CCANNNNNTGG	2 cut(s)	394, 865
PkrI	GCNGC	1 cut(s)	91
Ple19I	CGATCG	1 cut(s)	709
Psp6I	CCWGG	3 cut(s)	420, 516, 906
PspGI	CCWGG	3 cut(s)	420, 516, 906
PspN4I	GGNNCC	3 cut(s)	166, 346, 607
PspPI	GGNCC	1 cut(s)	164
PsrI	GAACNNNNNNTAC	4 cut(s)	539, 571, 679, 711
PstNI	CAGNNNCTG	2 cut(s)	373, 865
PvuI	CGATCG	1 cut(s)	709
RsaI	GTAC	4 cut(s)	5, 44, 161, 722
RsaNI	GTAC	4 cut(s)	4, 43, 160, 721
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	706, 784, 972
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	422, 518, 908
SduI	GDGCHC	2 cut(s)	224, 276
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	3 cut(s)	103, 207, 230
SsiI	CCGC	7 cut(s)	39, 61, 70, 87, 90, 425, 442
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	599, 726
StyD4I	CCNGG	3 cut(s)	420, 516, 906
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	4 cut(s)	375, 680, 924, 935
TaqI	TCGA	4 cut(s)	12, 126, 700, 827
TasI	AATT	3 cut(s)	103, 207, 230
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	119, 160
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	542, 897, 1036
TspRI	CASTG	2 cut(s)	119, 160
Van91I	CCANNNNNTGG	2 cut(s)	394, 865
VneI	GTGCAC	1 cut(s)	220
XceI	RCATGY	2 cut(s)	256, 403
XhoI	CTCGAG	1 cut(s)	699
XspI	CTAG	2 cut(s)	599, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.