Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0014150

Physical Location & Seq

Genomic Coordinates Forward (+)

148622 .. 152114

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgaccttcaacattcacggcggctacttggaggccatcgtccggggacaccgtgccggtcttctcaccgccgctgattacaacaacctctgccagtgcgagaccctcgacgacattaagatgcacctctctgccaccgagtacggcccctacctccaaaacgaaccatctccattgcatacaactaccattgtggaaaagtgcactcttaagttggttgatgagtacaagcacatgctatgccaagccacagagcccttgtcaacatttttggagtatatcacatatggtcatatgatagacaatgttgtcctgatcgttactggaactttgcatgagagagatgtccaggaactattggaaaaatgccaccctttgggcatgtttgacagcattgctaccctggcagttgcacagaatatgcgggagctttacagattggtgcttgttgacacacctcttgctccttacttttctgaatgcattacatcagaggatctggatgacatgaatattgaaatcatgaggaatactctttacaaggcataccttgaagatttttacaggttttgtcagaaactcggtggtgccacagcagagatcatgtctgacttacttgcttttgaagctgacagaagggctgtcaatattaccataaacagcattggaacagagcttactcgagatgatcgcaagaaattgtattctagctttggcttactctatccctatggccacgaggaacttgctatctgtgaggacattgatcaggttcgtggtgtcatggaaaagtatcctccttatcagtctatattttcaaaactatcttatggagagagccagatgcttgacaaggcattttatgaagaggaggtgaaaaggctttgtttagcatttgagcaacagtttcattatggcgtcttctttgcgtacatgaggttgagggagcaggagatcagaaatctgatgtggatatccgagtgtgtggctcagaaccagaagtccagagttcatgacagcgtggtcttcatattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007034 GO:0007035 GO:0008150 GO:0008324 GO:0008553 GO:0009506 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030054 GO:0030641 GO:0031090 GO:0032991 GO:0033176 GO:0034220 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055044 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05203 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05203 map05323

Pfam Domains

Protein Families

vATP-synt_AC39

Protein Analysis

345

Amino Acids

39.91

Weight (kDa)

4.94

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28710 AT3G28715 AT3G28715
fragaria_vesca	FvH4_6g49160
malus_domestica	MD09G1048000.v1.1 MD17G1048200.v1.1
prunus_persica	Prupe.3G271000_v2.0.a1 Prupe.3G271000_v2.0.a1
pyrus_communis	pycom17g04290
rosa_chinensis	RchiOBHm_Chr2g0169031
rosa_laevigata	RLG00000021825
rosa_multiflora	Rmu_ssc0000393.1_g000024
rosa_roxburghii	Rroxscaffold_2G00082520
rosa_rugosa	Rorug02G0536500
rosa_samantha	Rh2AG607900 Rh2CG589500
rosa_wichuraiana	Rw2G050410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	308, 1022
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	376
AciI	CCGC	4 cut(s)	21, 69, 72, 424
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	733
AcyI	GRCGYC	1 cut(s)	918
AfaI	GTAC	3 cut(s)	143, 227, 932
AfiI	CCNNNNNNNGG	2 cut(s)	42, 376
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	10, 518, 554, 626, 819
AjnI	CCWGG	2 cut(s)	348, 402
AloI	GAACNNNNNNTCC	2 cut(s)	986, 1018
AluBI	AGCT	4 cut(s)	430, 629, 676, 711
AluI	AGCT	4 cut(s)	430, 629, 676, 711
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	681
AoxI	GGCC	3 cut(s)	33, 145, 733
ApaLI	GTGCAC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	58, 886
AvaI	CYCGRG	1 cut(s)	681
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	735
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	737
BbsI	GAAGAC	3 cut(s)	53, 913, 1018
Bbv12I	GWGCWC	1 cut(s)	206
BccI	CCATC	2 cut(s)	44, 175
BceAI	ACGGC	2 cut(s)	34, 160
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	2 cut(s)	350, 404
BciVI	GTATCC	1 cut(s)	804
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	1 cut(s)	708
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	804
BisI	GCNGC	2 cut(s)	22, 72
BlsI	GCNGC	2 cut(s)	23, 73
Bme1390I	CCNGG	3 cut(s)	44, 350, 404
BmeT110I	CYCGRG	1 cut(s)	681
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	148, 589
BmrFI	CCNGG	3 cut(s)	44, 350, 404
BmsI	GCATC	2 cut(s)	111, 834
BpiI	GAAGAC	3 cut(s)	53, 913, 1018
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
BpuMI	CCSGG	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	918
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	43, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 376
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	94, 328
Bse3DI	GCAATG	2 cut(s)	173, 393
BseBI	CCWGG	2 cut(s)	350, 404
BseDI	CCNNGG	2 cut(s)	43, 402
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	2 cut(s)	42, 376
BseMI	GCAATG	2 cut(s)	173, 393
BseMII	CTCAG	1 cut(s)	1004
BseNI	ACTGG	2 cut(s)	94, 328
BseRI	GAGGAG	1 cut(s)	884
BseSI	GKGCMC	1 cut(s)	206
BshFI	GGCC	3 cut(s)	35, 147, 735
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	681
BsiSI	CCGG	2 cut(s)	43, 57
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	42, 376
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	35, 147, 735
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	206, 258
Bsp143I	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
BspACI	CCGC	4 cut(s)	21, 69, 72, 424
BspANI	GGCC	3 cut(s)	35, 147, 735
BspCNI	CTCAG	1 cut(s)	1003
BspHI	TCATGA	2 cut(s)	522, 1012
BspLI	GGNNCC	2 cut(s)	148, 589
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	173, 393
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	94, 328
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	43, 402
BssMI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
BssNI	GRCGYC	1 cut(s)	918
BssSI	CACGAG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	350, 404
Bst4CI	ACNGT	2 cut(s)	53, 906
Bst6I	CTCTTC	1 cut(s)	861
BstACI	GRCGYC	1 cut(s)	918
BstAFI	CTTAAG	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	990
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	6 cut(s)	318, 499, 603, 691, 769, 957
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 626
BstNI	CCWGG	2 cut(s)	350, 404
BstNSI	RCATGY	2 cut(s)	238, 385
BstSCI	CCNGG	3 cut(s)	42, 348, 402
BstSLI	GKGCMC	1 cut(s)	206
BstV2I	GAAGAC	3 cut(s)	53, 913, 1018
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	35, 147, 735
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	101
CciI	TCATGA	2 cut(s)	522, 1012
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	907
Csp6I	GTAC	3 cut(s)	142, 226, 931
CviAII	CATG	9 cut(s)	235, 335, 382, 508, 523, 604, 784, 934, 1013
CviQI	GTAC	3 cut(s)	142, 226, 931
DdeI	CTNAG	1 cut(s)	990
DpnI	GATC	6 cut(s)	317, 498, 602, 690, 768, 956
DpnII	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
DrdI	GACNNNNNNGTC	2 cut(s)	308, 1022
DseDI	GACNNNNNNGTC	2 cut(s)	308, 1022
EaeI	YGGCCR	1 cut(s)	733
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	348, 402
EcoRV	GATATC	1 cut(s)	975
EcoT22I	ATGCAT	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	9 cut(s)	234, 334, 381, 507, 522, 603, 783, 933, 1012
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	2 cut(s)	286, 294
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	2 cut(s)	22, 72
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	22, 72
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	2 cut(s)	22, 72
HaeIII	GGCC	3 cut(s)	35, 147, 735
HapII	CCGG	2 cut(s)	43, 57
HgaI	GACGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	918
Hin1II	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
HincII	GTYRAC	2 cut(s)	264, 451
HindII	GTYRAC	2 cut(s)	264, 451
HpaII	CCGG	2 cut(s)	43, 57
HphI	GGTGA	2 cut(s)	58, 886
Hpy166II	GTNNAC	3 cut(s)	204, 264, 451
Hpy188I	TCNGA	8 cut(s)	478, 493, 576, 610, 959, 966, 979, 993
Hpy188III	TCNNGA	6 cut(s)	313, 500, 523, 683, 1005, 1013
Hpy8I	GTNNAC	3 cut(s)	204, 264, 451
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	16, 630
HpyCH4III	ACNGT	2 cut(s)	53, 906
HpyCH4V	TGCA	6 cut(s)	124, 178, 204, 334, 413, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 626
HpyF3I	CTNAG	1 cut(s)	990
Hsp92I	GRCGYC	1 cut(s)	918
Hsp92II	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
LmnI	GCTCC	3 cut(s)	427, 469, 946
LweI	GCATC	2 cut(s)	111, 834
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	6 cut(s)	317, 498, 602, 690, 768, 956
MboI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
MboII	GAAGA	5 cut(s)	53, 566, 878, 913, 1018
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	206, 258
MlsI	TGGCCA	1 cut(s)	735
MluCI	AATT	1 cut(s)	698
MluNI	TGGCCA	1 cut(s)	735
Mox20I	TGGCCA	1 cut(s)	735
Mph1103I	ATGCAT	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	735
MseI	TTAA	2 cut(s)	117, 210
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	43, 57
MspR9I	CCNGG	3 cut(s)	44, 350, 404
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	350, 404
MwoI	GCNNNNNNNGC	2 cut(s)	404, 626
NciI	CCSGG	1 cut(s)	44
NdeI	CATATG	2 cut(s)	286, 294
NdeII	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
NlaIII	CATG	9 cut(s)	238, 338, 385, 511, 526, 607, 787, 937, 1016
NlaIV	GGNNCC	2 cut(s)	148, 589
NsiI	ATGCAT	1 cut(s)	485
NspI	RCATGY	2 cut(s)	238, 385
PaeR7I	CTCGAG	1 cut(s)	681
PagI	TCATGA	2 cut(s)	522, 1012
PctI	GAATGC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	23, 73
Psp6I	CCWGG	2 cut(s)	348, 402
PspGI	CCWGG	2 cut(s)	348, 402
PspN4I	GGNNCC	2 cut(s)	148, 589
PspPI	GGNCC	1 cut(s)	146
PsrI	GAACNNNNNNTAC	2 cut(s)	661, 693
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	3 cut(s)	143, 227, 932
RsaNI	GTAC	3 cut(s)	142, 226, 931
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	117, 210
SatI	GCNGC	2 cut(s)	22, 72
Sau3AI	GATC	6 cut(s)	315, 496, 600, 688, 766, 954
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	44, 350, 404
SduI	GDGCHC	2 cut(s)	206, 258
SfaNI	GCATC	2 cut(s)	111, 834
Sfr274I	CTCGAG	1 cut(s)	681
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	209, 681
SmoI	CTYRAG	2 cut(s)	209, 681
Sse9I	AATT	1 cut(s)	698
SsiI	CCGC	4 cut(s)	21, 69, 72, 424
SspI	AATATT	2 cut(s)	514, 649
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	42, 348, 402
TaaI	ACNGT	2 cut(s)	53, 906
TaqI	TCGA	2 cut(s)	108, 682
TasI	AATT	1 cut(s)	698
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	2 cut(s)	24, 74
Tru1I	TTAA	2 cut(s)	117, 210
Tru9I	TTAA	2 cut(s)	117, 210
TscAI	CASTG	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	524, 879, 899, 1001, 1018
TspRI	CASTG	1 cut(s)	101
Van91I	CCANNNNNTGG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	202
XceI	RCATGY	2 cut(s)	238, 385
XhoI	CTCGAG	1 cut(s)	681
XspI	CTAG	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.