MD17G1059700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014143
Physical Location & Seq
Forward (+)
4860724 .. 4861831
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1059700.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGAGAATCTACCAGAAATGCCTCCTACGAGCCCGACTCAATCAGAGAAGATATTTTCCGAGTGCAAATCGCCACCGCCTCCACTCCAACACAAGGATGAAAATTCTCAAAACTCCGGCAACGATTTACGCAAAACCACCACGCCGGACCACCTTAAAGTCCCCAAGGCATTTAAATTCCCAGAAAGGTATACAAGCCCAACAGATATGAAATTGTCCCCTGTAACAAAAGGCCTTCTAGCCAGAAACAGAAAGGGTGGTGCCCTCTTGCCCCCTAGCAAAAATTTACTCAAACCTCCTCGAGATTCAGGAGTTGCAGGTGTGGATGGTCCAGCTTCAGAAGTAAAGTTTGGGTGCAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spo12

Protein Analysis

122

Amino Acids

13.16

Weight (kDa)

9.36

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02120
fragaria_vesca FvH4_6g46850
malus_domestica MD09G1066800.v1.1 MD17G1059700.v1.1
prunus_persica Prupe.3G254900_v2.0.a1
pyrus_communis pycom111g05610 pycom17g05940
rosa_chinensis RchiOBHm_Chr2g0165841
rosa_laevigata RLG00000021561
rosa_multiflora Rmu_sc0008709.1_g000002
rosa_roxburghii Rroxscaffold_2G00085450
rosa_rugosa Rorug02G0518300
rosa_samantha Rh2AG583900 Rh2BG596000 Rh2CG566800 Rh2DG605800
rosa_wichuraiana Rw2G048700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 191
AciI CCGC 1 cut(s) 77
AcsI RAATTY 3 cut(s) 103, 176, 283
AcuI CTGAAG 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 1 cut(s) 232
ApoI RAATTY 3 cut(s) 103, 176, 283
AspS9I GGNCC 2 cut(s) 148, 329
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 2 cut(s) 148, 329
BaeGI GKGCMC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 35
BccI CCATC 1 cut(s) 320
BfaI CTAG 2 cut(s) 239, 276
BfuAI ACCTGC 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 148, 329
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 2 cut(s) 148, 329
BmiI GGNNCC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 103, 331
BseLI CCNNNNNNNGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 265
BshFI GGCC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 2 cut(s) 117, 146
BslFI GGGAC 2 cut(s) 146, 202
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 146, 202
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 35, 265
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 165
BssNAI GTATAC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 192
BstF5I GGATG 2 cut(s) 103, 331
BstSLI GKGCMC 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 103, 331
BveI ACCTGC 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 148, 329
CviJI RGCY 5 cut(s) 33, 198, 234, 242, 335
CviKI_1 RGCY 5 cut(s) 33, 198, 234, 242, 335
DraI TTTAAA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 148, 329
Eco57I CTGAAG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 165
FaiI YATR 2 cut(s) 192, 209
FaqI GGGAC 2 cut(s) 146, 202
FblI GTMKAC 1 cut(s) 191
FokI GGATG 2 cut(s) 110, 338
FriOI GRGCYC 1 cut(s) 35
FspBI CTAG 2 cut(s) 239, 276
HaeIII GGCC 1 cut(s) 234
HapII CCGG 2 cut(s) 117, 146
HinfI GANTC 3 cut(s) 7, 37, 305
HpaII CCGG 2 cut(s) 117, 146
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 3 cut(s) 46, 61, 340
Hpy188III TCNNGA 2 cut(s) 302, 309
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 66, 317, 357
LpnPI CCDG 9 cut(s) 27, 130, 159, 195, 234, 256, 294, 303, 345
MaeI CTAG 2 cut(s) 239, 276
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 35, 265
MluCI AATT 5 cut(s) 103, 176, 212, 283, 361
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 33, 90, 275, 306, 309
MseI TTAA 2 cut(s) 156, 174
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 2 cut(s) 117, 146
NlaIV GGNNCC 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 300
PaqCI CACCTGC 1 cut(s) 308
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 2 cut(s) 7, 305
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 2 cut(s) 148, 329
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 156, 174
Sau96I GGNCC 2 cut(s) 148, 329
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 2 cut(s) 35, 265
SetI ASST 5 cut(s) 156, 191, 298, 322, 337
Sfr274I CTCGAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 148, 329
SlaI CTCGAG 1 cut(s) 300
SmiI ATTTAAAT 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 300
SmoI CTYRAG 1 cut(s) 300
Sse9I AATT 5 cut(s) 103, 176, 212, 283, 361
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 77
SspMI CTAG 2 cut(s) 239, 276
StuI AGGCCT 1 cut(s) 234
StyI CCWWGG 1 cut(s) 165
SwaI ATTTAAAT 1 cut(s) 175
TaqI TCGA 1 cut(s) 301
TasI AATT 5 cut(s) 103, 176, 212, 283, 361
TfiI GAWTC 2 cut(s) 7, 305
Tru1I TTAA 2 cut(s) 156, 174
Tru9I TTAA 2 cut(s) 156, 174
TspDTI ATGAA 2 cut(s) 114, 224
VpaK11BI GGWCC 2 cut(s) 148, 329
XapI RAATTY 3 cut(s) 103, 176, 283
XhoI CTCGAG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 2 cut(s) 239, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.