pycom111g05610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0014143
Physical Location & Seq
Forward (+)
3591741 .. 3592700
960 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g05610.2

Sequence Viewer

Length: 426 bp
ATGCCTTCTGAATTTATTAAAGTTTTCAGTTCAATGTTCTCTCTCACGAATCACACTATGGAGAACCTACCAGAAGTGCCTCCTATGAGCCCAACTCAGGCAGAGAAGACATTTTCCGAGTGCATAACGCCACCGCCTCCGCTTCAACACAAGGATGAAAATTCTCAAAACTCCGGCAACGATTTACGCAAAACCACCATGCCGGATCGCCTTAAGGTCCCCAAGGCATTTAAGTTCCCAGAAAGGTATACTAGCCCAACCGATATGATAATGTCCCCTGTAACACAAGGCCTTCTTGCCAGAAACAGAAGGGGTGGTGCCCTCTTGCCCCCTAGCATAAATCTACTCAAAACTCCTCAAGATTCAGGAATTGAAGGTGTGGGATGTGGTCCAACTTCTGAATTAAAGTTTGGGTGCGATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Spo12

Protein Analysis

142

Amino Acids

15.52

Weight (kDa)

6.72

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02120
fragaria_vesca FvH4_6g46850
malus_domestica MD09G1066800.v1.1 MD17G1059700.v1.1
prunus_persica Prupe.3G254900_v2.0.a1
pyrus_communis pycom111g05610 pycom17g05940
rosa_chinensis RchiOBHm_Chr2g0165841
rosa_laevigata RLG00000021561
rosa_multiflora Rmu_sc0008709.1_g000002
rosa_roxburghii Rroxscaffold_2G00085450
rosa_rugosa Rorug02G0518300
rosa_samantha Rh2AG583900 Rh2BG596000 Rh2CG566800 Rh2DG605800
rosa_wichuraiana Rw2G048700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 248
AciI CCGC 2 cut(s) 134, 140
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 11, 160
AfiI CCNNNNNNNGG 1 cut(s) 97
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 3 cut(s) 33, 146, 374
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 11, 160
AspS9I GGNCC 2 cut(s) 217, 389
AvaII GGWCC 2 cut(s) 217, 389
BaeGI GKGCMC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 113
BfaI CTAG 2 cut(s) 252, 333
BfrI CTTAAG 1 cut(s) 212
Bme18I GGWCC 2 cut(s) 217, 389
BmgT120I GGNCC 2 cut(s) 217, 389
BmiI GGNNCC 2 cut(s) 219, 319
BpiI GAAGAC 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpuEI CTTGAG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 160, 389
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 345
BseSI GKGCMC 1 cut(s) 322
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 174, 203
BslFI GGGAC 2 cut(s) 203, 259
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 2 cut(s) 203, 259
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 92, 322
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 2 cut(s) 134, 140
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 219, 319
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 205
BssNAI GTATAC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 160, 389
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstSLI GKGCMC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 2 cut(s) 160, 389
Cfr13I GGNCC 2 cut(s) 217, 389
CviAII CATG 1 cut(s) 199
CviJI RGCY 3 cut(s) 90, 255, 291
CviKI_1 RGCY 3 cut(s) 90, 255, 291
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 217, 389
EcoO109I RGGNCCY 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 202
FaiI YATR 7 cut(s) 59, 86, 125, 200, 249, 266, 338
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 2 cut(s) 203, 259
FatI CATG 1 cut(s) 198
FblI GTMKAC 1 cut(s) 248
FokI GGATG 2 cut(s) 167, 396
FriOI GRGCYC 1 cut(s) 92
FspBI CTAG 2 cut(s) 252, 333
HaeIII GGCC 1 cut(s) 291
HapII CCGG 2 cut(s) 174, 203
Hin1II CATG 1 cut(s) 202
HinfI GANTC 2 cut(s) 49, 362
HpaII CCGG 2 cut(s) 174, 203
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 10, 118, 400
Hpy188III TCNNGA 3 cut(s) 46, 359, 366
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 4 cut(s) 15, 302, 303, 368
HpyCH4V TGCA 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 83, 84, 187, 216, 252, 291, 313, 351
MaeI CTAG 2 cut(s) 252, 333
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 92, 322
MluCI AATT 5 cut(s) 11, 160, 369, 401, 421
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 4 cut(s) 90, 147, 332, 366
MseI TTAA 4 cut(s) 18, 213, 231, 404
MslI CAYNNNNRTG 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 2 cut(s) 174, 203
NdeII GATC 1 cut(s) 205
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 2 cut(s) 219, 319
PceI AGGCCT 1 cut(s) 291
PfeI GAWTC 2 cut(s) 49, 362
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 219, 319
PspPI GGNCC 2 cut(s) 217, 389
PspPPI RGGWCCY 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 4 cut(s) 18, 213, 231, 404
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 2 cut(s) 217, 389
SduI GDGCHC 2 cut(s) 92, 322
SetI ASST 4 cut(s) 69, 219, 248, 379
SinI GGWCC 2 cut(s) 217, 389
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 212, 357
SmoI CTYRAG 2 cut(s) 212, 357
Sse9I AATT 5 cut(s) 11, 160, 369, 401, 421
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 2 cut(s) 134, 140
SspMI CTAG 2 cut(s) 252, 333
StuI AGGCCT 1 cut(s) 291
StyI CCWWGG 1 cut(s) 222
TasI AATT 5 cut(s) 11, 160, 369, 401, 421
TfiI GAWTC 2 cut(s) 49, 362
Tru1I TTAA 4 cut(s) 18, 213, 231, 404
Tru9I TTAA 4 cut(s) 18, 213, 231, 404
TspDTI ATGAA 1 cut(s) 171
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 217, 389
XapI RAATTY 2 cut(s) 11, 160
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 2 cut(s) 252, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.