Rh2CG566800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
74751503 .. 74753972
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG566800.1

Sequence Viewer

Length: 363 bp
ATGGAAAACGTGCAAGAAATAATGCCTCCTAAAACCCCAATTCAATCTGAGACTATGAGCTTCTCTGATTGCATAACACCACCTCCACTCCAACACAAAGATGAAAACTCTCAAAATTCCGGCAACGATATACACAAAACCATCACCCCCGATCGCCTTAAAGTTCCGAAGGCATTCAAGTTCCCAGAAAGGTATACAAGCCCAACTGATATGATAATGTCCCCTGTAACAAAAGGACTTCTGGCCAGAAACAGAAAGGGTACTACCCTCTTGCCTCCTAGCAAAAATCTGCTCAAGCCTACTCAAGGTAAGAGTCACATTCATAGTTTTATTTGGCTATCAATATTCTTTTTGTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.61

Weight (kDa)

9.56

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02120
fragaria_vesca FvH4_6g46850
malus_domestica MD09G1066800.v1.1 MD17G1059700.v1.1
prunus_persica Prupe.3G254900_v2.0.a1
pyrus_communis pycom111g05610 pycom17g05940
rosa_chinensis RchiOBHm_Chr2g0165841
rosa_laevigata RLG00000021561
rosa_multiflora Rmu_sc0008709.1_g000002
rosa_roxburghii Rroxscaffold_2G00085450
rosa_rugosa Rorug02G0518300
rosa_samantha Rh2AG583900 Rh2BG596000 Rh2CG566800 Rh2DG605800
rosa_wichuraiana Rw2G048700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 3 cut(s) 44, 178, 358
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 136
BalI TGGCCA 1 cut(s) 245
BccI CCATC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 278, 288
BsaXI ACNNNNNCTCC 4 cut(s) 67, 72, 97, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 40
BssMI GATC 1 cut(s) 151
BssNAI GTATAC 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 303
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 154
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 261
CviJI RGCY 5 cut(s) 60, 201, 245, 298, 337
CviKI_1 RGCY 5 cut(s) 60, 201, 245, 298, 337
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 303
FaiI YATR 6 cut(s) 56, 74, 131, 195, 212, 324
FaqI GGGAC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 194
FspBI CTAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 120
HinfI GANTC 1 cut(s) 313
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 49, 67, 168
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 13, 72
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 133, 198, 227, 237, 259
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 226, 314
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 3 cut(s) 39, 115, 358
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 36, 93, 278, 285
Mox20I TGGCCA 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 173
MscI TGGCCA 1 cut(s) 245
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 173
NdeII GATC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 314
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 173
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 1 cut(s) 322
SetI ASST 5 cut(s) 12, 62, 85, 194, 310
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 293, 303
SmoI CTYRAG 2 cut(s) 293, 303
Sse9I AATT 3 cut(s) 39, 115, 358
SspI AATATT 1 cut(s) 345
SspMI CTAG 1 cut(s) 279
TaiI ACGT 1 cut(s) 12
TasI AATT 3 cut(s) 39, 115, 358
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 117, 311
XagI CCTNNNNNAGG 1 cut(s) 303
XapI RAATTY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.