Rw2G048700

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
76242738 .. 76243635
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048700.1

Sequence Viewer

Length: 333 bp
ATGGAAAACGTGCAAGAAATAATGCCTCCCAAAACCCCAATTCAATCTGAGATTATGAGCTTCTCTGATTGCATAACACCACCTCCACTCCAACACAAAGATGAAAACTCTCAAAATTCCGGCAACGATATACACAAAACCATCACCCCCGATCGCCTTAAAGTTCCGAAGGCATTTAAGTTCCCAGAAAGGTATACAAGCCCAACTGATATGATAATGTCCCCTGTAACAAAAGGACTTCTGGCCAGAAACAGAAAGGGTACTACCCTCTTGCCTCCTAGCAAAAATCTGCTCAAGCCTACTCAAGATTCTGGATTTGCAGCAGTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

8.79

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02120
fragaria_vesca FvH4_6g46850
malus_domestica MD09G1066800.v1.1 MD17G1059700.v1.1
prunus_persica Prupe.3G254900_v2.0.a1
pyrus_communis pycom111g05610 pycom17g05940
rosa_chinensis RchiOBHm_Chr2g0165841
rosa_laevigata RLG00000021561
rosa_multiflora Rmu_sc0008709.1_g000002
rosa_roxburghii Rroxscaffold_2G00085450
rosa_rugosa Rorug02G0518300
rosa_samantha Rh2AG583900 Rh2BG596000 Rh2CG566800 Rh2DG605800
rosa_wichuraiana Rw2G048700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 1 cut(s) 262
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 136
BalI TGGCCA 1 cut(s) 245
BccI CCATC 1 cut(s) 149
BfaI CTAG 1 cut(s) 279
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 278, 288
BsaXI ACNNNNNCTCC 4 cut(s) 67, 72, 97, 102
BseMII CTCAG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 40
BssMI GATC 1 cut(s) 151
BssNAI GTATAC 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMCI CGRYCG 1 cut(s) 154
BstZ17I GTATAC 1 cut(s) 195
BsuRI GGCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 261
CviJI RGCY 4 cut(s) 60, 201, 245, 298
CviKI_1 RGCY 4 cut(s) 60, 201, 245, 298
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 243
FaiI YATR 5 cut(s) 56, 74, 131, 195, 212
FaqI GGGAC 1 cut(s) 205
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 120
HinfI GANTC 1 cut(s) 308
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 49, 67, 168
Hpy188III TCNNGA 2 cut(s) 305, 312
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 13, 72, 320
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 9
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 6 cut(s) 133, 198, 227, 237, 259, 297
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 2 cut(s) 39, 115
MluNI TGGCCA 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 36, 93, 278, 285
Mox20I TGGCCA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 245
MseI TTAA 2 cut(s) 159, 177
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 1 cut(s) 120
NdeII GATC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 1 cut(s) 322
Ple19I CGATCG 1 cut(s) 154
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 159, 177
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 151
SetI ASST 4 cut(s) 12, 62, 85, 194
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 293, 303
SmoI CTYRAG 2 cut(s) 293, 303
Sse9I AATT 2 cut(s) 39, 115
SspMI CTAG 1 cut(s) 279
TaiI ACGT 1 cut(s) 12
TasI AATT 2 cut(s) 39, 115
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 159, 177
Tru9I TTAA 2 cut(s) 159, 177
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 117
XapI RAATTY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.