MD17G1091200.v1.1

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015185
Physical Location & Seq
Forward (+)
7607014 .. 7607702
689 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1091200.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGTGAAACACTTGAGACTCTGGATTTTTGAGTGCAGAGAACCAAGCCATGAAGCATTCAAGCTAGGGTTAGCTGCAGCTGGACTTTTGGTTCTTGCACATGTTGTTGCCAACTTGCTTGGTGGATGCAATTGCATTTGTTCTCAGGATGAACTCCAAAAGGCTCCTCCTAACAAGCAACTCTCAATGGCATGCCTCGTCTTCACTTGGATAATTTTGGCCGTTGGATTGTCCATGCTGGTGATAGGGACTTGGTCAAACCACAAGTCAAGAGCATCATGTGGCTTCACACACCACCATTTTCTGTCGATTGGAGGCATCTTGTGTTTTGTTCATGGGCTGTTTTGTGTAGCTTATTACATATCTGCCACCGCATCGACTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

129

Amino Acids

13.93

Weight (kDa)

8.48

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 26 - 113 1.3e-22 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32280 AT2G32280
fragaria_vesca FvH4_6g43740 FvH4_6g43740
malus_domestica MD09G1103300.v1.1 MD17G1091200.v1.1
prunus_persica Prupe.3G222400_v2.0.a1
pyrus_communis pycom09g02680 pycom17g08810
rosa_chinensis RchiOBHm_Chr2g0160471
rosa_laevigata RLG00000021216
rosa_multiflora Rmu_sc0002771.1_g000002
rosa_roxburghii Rroxscaffold_2G00089800
rosa_rugosa Rorug02G0483300
rosa_samantha Rh2DG570900
rosa_wichuraiana Rw2G045410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 1 cut(s) 61
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 64, 74, 80, 353
AluI AGCT 4 cut(s) 64, 74, 80, 353
Alw26I GTCTC 1 cut(s) 10
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 74, 77
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsuHPI GGTGA 2 cut(s) 16, 253
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 61, 89
BceAI ACGGC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 75, 78
BlsI GCNGC 2 cut(s) 76, 79
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 4 cut(s) 116, 284, 327, 383
BpiI GAAGAC 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 34
BseGI GGATG 2 cut(s) 131, 154
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 61, 89
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 221
BslFI GGGAC 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 1 cut(s) 221
BspACI CCGC 1 cut(s) 372
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 131, 154
BstMAI GTCTC 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 104, 195
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 61, 89
BstV2I GAAGAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 131, 154
Cac8I GCNNGC 1 cut(s) 193
CviAII CATG 6 cut(s) 50, 101, 192, 235, 279, 335
CviJI RGCY 9 cut(s) 48, 64, 74, 80, 164, 221, 285, 340, 353
CviKI_1 RGCY 9 cut(s) 48, 64, 74, 80, 164, 221, 285, 340, 353
DdeI CTNAG 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 219
FaeI CATG 6 cut(s) 53, 104, 195, 238, 282, 338
FaiI YATR 7 cut(s) 51, 102, 193, 236, 280, 336, 362
FaqI GGGAC 1 cut(s) 262
FatI CATG 6 cut(s) 49, 100, 191, 234, 278, 334
Fnu4HI GCNGC 2 cut(s) 75, 78
FokI GGATG 2 cut(s) 138, 161
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 75, 78
HaeIII GGCC 1 cut(s) 221
Hin1II CATG 6 cut(s) 53, 104, 195, 238, 282, 338
HinfI GANTC 1 cut(s) 18
HphI GGTGA 2 cut(s) 16, 253
Hpy188III TCNNGA 3 cut(s) 22, 146, 270
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 5 cut(s) 36, 77, 98, 129, 135
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 6 cut(s) 53, 104, 195, 238, 282, 338
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 7, 66, 131, 224
Lsp1109I GCAGC 2 cut(s) 61, 89
LweI GCATC 4 cut(s) 116, 284, 327, 383
MaeI CTAG 1 cut(s) 65
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 1 cut(s) 130
MluCI AATT 2 cut(s) 130, 213
MlyI GAGTC 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 3 cut(s) 177, 206, 308
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 80
MunI CAATTG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 56
NlaIII CATG 6 cut(s) 53, 104, 195, 238, 282, 338
NlaIV GGNNCC 1 cut(s) 165
NspI RCATGY 2 cut(s) 104, 195
PaeI GCATGC 1 cut(s) 195
PciI ACATGT 1 cut(s) 100
PctI GAATGC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 76, 79
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 165
PstI CTGCAG 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 2 cut(s) 75, 78
SchI GAGTC 1 cut(s) 12
SetI ASST 4 cut(s) 66, 76, 82, 355
SfaNI GCATC 4 cut(s) 116, 284, 327, 383
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SphI GCATGC 1 cut(s) 195
Sse9I AATT 2 cut(s) 130, 213
SsiI CCGC 1 cut(s) 372
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 308, 377
TasI AATT 2 cut(s) 130, 213
TseI GCWGC 2 cut(s) 74, 77
TspDTI ATGAA 3 cut(s) 66, 165, 323
Tth111I GACNNNGTC 1 cut(s) 253
XceI RCATGY 2 cut(s) 104, 195
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.