Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015185

Physical Location & Seq

Genomic Coordinates Forward (+)

1986676 .. 1987402

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTAAGATTGGAGGGTTCTTCGTCTGCCTCTTGATCGTGGCAATAGACATCGTAGCCGGGATTCTTGGCATCGAAGCAGAACTCGAACAAAACAAGGTGAAACACTTGAGACTCTGGATCTTCGAGTGTAGAGAACCAAGCCATGCAGCATTCAAACTAGGGTTAGCTGCAGCCGGACTTCTGGTTCTTGCACATGTTATTGCAAACTTGCTAGGTGGATGCAACTGCATTTGTTCTCAGGATGAACTCCAAAAGGCCCCTCCTAATAAGCAACTCTCTGTCGCTTGCCTCGTCTTAACTTGGATCATTTTGGCCGTTGGATTGTCAATGCTGGTGATAGGGACTTGGTCAAACCACAAGTCAAGATCTTCATGTGGTTTCACACACCATCATTTTCTGTCGATTGGAGGCATCGTGTGTTTTGTTCATGGGCTGTTTTGTGTAGCTTATTACATATCTGTCACTGCCTCTACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

161

Amino Acids

17.17

Weight (kDa)

8.11

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32280 AT2G32280
fragaria_vesca	FvH4_6g43740 FvH4_6g43740
malus_domestica	MD09G1103300.v1.1 MD17G1091200.v1.1
prunus_persica	Prupe.3G222400_v2.0.a1
pyrus_communis	pycom09g02680 pycom17g08810
rosa_chinensis	RchiOBHm_Chr2g0160471
rosa_laevigata	RLG00000021216
rosa_multiflora	Rmu_sc0002771.1_g000002
rosa_roxburghii	Rroxscaffold_2G00089800
rosa_rugosa	Rorug02G0483300
rosa_samantha	Rh2DG570900
rosa_wichuraiana	Rw2G045410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	128, 314
AcoI	YGGCCR	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	157
AloI	GAACNNNNNNTCC	2 cut(s)	171, 203
AluBI	AGCT	2 cut(s)	170, 449
AluI	AGCT	2 cut(s)	170, 449
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	128, 314
AoxI	GGCC	2 cut(s)	258, 315
ApeKI	GCWGC	3 cut(s)	149, 170, 173
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	112, 349
BbvI	GCAGC	3 cut(s)	157, 161, 185
BccI	CCATC	1 cut(s)	399
BceAI	ACGGC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	161, 215
BfmI	CTRYAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	3 cut(s)	150, 171, 174
BlsI	GCNGC	3 cut(s)	151, 172, 175
Bme1390I	CCNGG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	81, 212, 423
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse1I	ACTGG	1 cut(s)	481
BseGI	GGATG	2 cut(s)	227, 250
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	157, 161, 185
BshFI	GGCC	2 cut(s)	260, 317
BsiSI	CCGG	2 cut(s)	60, 177
BslFI	GGGAC	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	260, 317
Bsp143I	GATC	4 cut(s)	36, 120, 306, 368
BspANI	GGCC	2 cut(s)	260, 317
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	2 cut(s)	128, 314
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	36, 120, 306, 368
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	227, 250
BstKTI	GATC	4 cut(s)	39, 123, 309, 371
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	36, 120, 306, 368
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	157, 161, 185
BstX2I	RGATCY	2 cut(s)	120, 368
BstYI	RGATCY	2 cut(s)	120, 368
BsuRI	GGCC	2 cut(s)	260, 317
BtsCI	GGATG	2 cut(s)	227, 250
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	259
CviAII	CATG	4 cut(s)	146, 197, 375, 431
CviJI	RGCY	8 cut(s)	59, 144, 170, 176, 260, 317, 436, 449
CviKI_1	RGCY	8 cut(s)	59, 144, 170, 176, 260, 317, 436, 449
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	4 cut(s)	38, 122, 308, 370
DpnII	GATC	4 cut(s)	36, 120, 306, 368
EaeI	YGGCCR	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	259
FaeI	CATG	4 cut(s)	149, 200, 378, 434
FaiI	YATR	5 cut(s)	147, 198, 376, 432, 458
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	145, 196, 374, 430
Fnu4HI	GCNGC	3 cut(s)	150, 171, 174
FokI	GGATG	2 cut(s)	234, 257
Fsp4HI	GCNGC	3 cut(s)	150, 171, 174
FspBI	CTAG	2 cut(s)	161, 215
GluI	GCNGC	3 cut(s)	150, 171, 174
HaeIII	GGCC	2 cut(s)	260, 317
HapII	CCGG	2 cut(s)	60, 177
Hin1II	CATG	4 cut(s)	149, 200, 378, 434
HinfI	GANTC	2 cut(s)	64, 114
HpaII	CCGG	2 cut(s)	60, 177
HphI	GGTGA	2 cut(s)	112, 349
Hpy188III	TCNNGA	4 cut(s)	34, 118, 242, 366
HpyCH4V	TGCA	6 cut(s)	149, 173, 194, 206, 225, 231
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	149, 200, 378, 434
Kzo9I	GATC	4 cut(s)	36, 120, 306, 368
LpnPI	CCDG	7 cut(s)	73, 103, 170, 190, 227, 320, 462
Lsp1109I	GCAGC	3 cut(s)	157, 161, 185
LweI	GCATC	3 cut(s)	81, 212, 423
MaeI	CTAG	2 cut(s)	161, 215
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	38, 122, 308, 370
MboI	GATC	4 cut(s)	36, 120, 306, 368
MboII	GAAGA	3 cut(s)	13, 115, 363
MflI	RGATCY	2 cut(s)	120, 368
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	8, 41, 273, 302, 404, 481
MseI	TTAA	3 cut(s)	6, 299, 481
MspI	CCGG	2 cut(s)	60, 177
MspR9I	CCNGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	4 cut(s)	36, 120, 306, 368
NlaIII	CATG	4 cut(s)	149, 200, 378, 434
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	200
PciI	ACATGT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	151, 172, 175
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PscI	ACATGT	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	2 cut(s)	120, 368
PsyI	GACNNNGTC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	6, 299, 481
SatI	GCNGC	3 cut(s)	150, 171, 174
Sau3AI	GATC	4 cut(s)	36, 120, 306, 368
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	4 cut(s)	102, 172, 220, 451
SfaNI	GCATC	3 cut(s)	81, 212, 423
SfcI	CTRYAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SspMI	CTAG	2 cut(s)	161, 215
StyD4I	CCNGG	1 cut(s)	59
TaqI	TCGA	4 cut(s)	75, 87, 126, 404
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	3 cut(s)	6, 299, 481
Tru9I	TTAA	3 cut(s)	6, 299, 481
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	3 cut(s)	149, 170, 173
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	261, 363, 419
TspRI	CASTG	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	2 cut(s)	161, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.