pycom17g08810

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015185
Physical Location & Seq
Forward (+)
6636444 .. 6637334
891 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08810.1

Sequence Viewer

Length: 483 bp
ATGGTTAAGATAGGAGGGTTTTTGGTCTGCCTCTTGATCGTGGTGATGGACATTGTAGCCGGGATTCTTGGCATCGAAGCGGAACTCGAACAAAACAAGGTGAAACACTTGAGACTCTGGATTTTTGAGTGCAGAGAACCAAGCCATGAAGCATTCAAGCTAGGGTTAGCTGCAGCCGGACTTTTGGTTCTTGCACATGTTGTTGCCAACTTACTTGGTGGATGCAATTGCATTTGTTCTCAGGATGAACTCCAAAAGGCTCCTCCTAACAAGCAACTCTCAATGGCATGCCTCGTCTTCACTTGGATTATTTTGGCCGTTGGATTGTCCATGCTGGTGATAGGGACTTGGTCAAACCACAAGTCAAGAGCTTCATGTGGCTTCACACACCACCATTTTCTGTCGATTGGAGGCATCTTGTGTTTTGTTCATGGGCTGTTTTGTGTAGCTTATTACATATCTACCACCGCCTCGACTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

161

Amino Acids

17.34

Weight (kDa)

7.61

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 58 - 145 2.5e-22 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32280 AT2G32280
fragaria_vesca FvH4_6g43740 FvH4_6g43740
malus_domestica MD09G1103300.v1.1 MD17G1091200.v1.1
prunus_persica Prupe.3G222400_v2.0.a1
pyrus_communis pycom09g02680 pycom17g08810
rosa_chinensis RchiOBHm_Chr2g0160471
rosa_laevigata RLG00000021216
rosa_multiflora Rmu_sc0002771.1_g000002
rosa_roxburghii Rroxscaffold_2G00089800
rosa_rugosa Rorug02G0483300
rosa_samantha Rh2DG570900
rosa_wichuraiana Rw2G045410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 80, 468
AcoI YGGCCR 1 cut(s) 315
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 1 cut(s) 157
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 4 cut(s) 160, 170, 371, 449
AluI AGCT 4 cut(s) 160, 170, 371, 449
Alw26I GTCTC 1 cut(s) 106
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 2 cut(s) 170, 173
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 55, 112, 349
BbsI GAAGAC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 157, 185
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 302
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 171, 174
BlsI GCNGC 2 cut(s) 172, 175
Bme1390I CCNGG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 81, 212, 423
BpiI GAAGAC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 227, 250
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 157, 185
BsgI GTGCAG 1 cut(s) 151
BshFI GGCC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 60, 177
BslFI GGGAC 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 2 cut(s) 80, 468
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 175
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 227, 250
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 36
BstNSI RCATGY 2 cut(s) 200, 291
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 157, 185
BstV2I GAAGAC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 2 cut(s) 227, 250
Cac8I GCNNGC 1 cut(s) 289
CviAII CATG 6 cut(s) 146, 197, 288, 331, 375, 431
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 315
FaeI CATG 6 cut(s) 149, 200, 291, 334, 378, 434
FaiI YATR 7 cut(s) 147, 198, 289, 332, 376, 432, 458
FaqI GGGAC 1 cut(s) 358
FatI CATG 6 cut(s) 145, 196, 287, 330, 374, 430
Fnu4HI GCNGC 2 cut(s) 171, 174
FokI GGATG 2 cut(s) 234, 257
Fsp4HI GCNGC 2 cut(s) 171, 174
FspBI CTAG 1 cut(s) 161
GluI GCNGC 2 cut(s) 171, 174
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 60, 177
Hin1II CATG 6 cut(s) 149, 200, 291, 334, 378, 434
HinfI GANTC 2 cut(s) 64, 114
HpaII CCGG 2 cut(s) 60, 177
HphI GGTGA 3 cut(s) 55, 112, 349
Hpy188III TCNNGA 4 cut(s) 34, 118, 242, 366
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 132, 173, 194, 225, 231
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 6 cut(s) 149, 200, 291, 334, 378, 434
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 73, 103, 190, 227, 320
Lsp1109I GCAGC 2 cut(s) 157, 185
LweI GCATC 3 cut(s) 81, 212, 423
MaeI CTAG 1 cut(s) 161
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 289
MfeI CAATTG 1 cut(s) 226
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 8, 41, 273, 302, 404, 481
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 2 cut(s) 60, 177
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 36
NlaIII CATG 6 cut(s) 149, 200, 291, 334, 378, 434
NlaIV GGNNCC 1 cut(s) 261
NspI RCATGY 2 cut(s) 200, 291
PaeI GCATGC 1 cut(s) 291
PciI ACATGT 1 cut(s) 196
PctI GAATGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 349
PkrI GCNGC 2 cut(s) 172, 175
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PscI ACATGT 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 171, 174
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 61
SetI ASST 5 cut(s) 102, 162, 172, 373, 451
SfaNI GCATC 3 cut(s) 81, 212, 423
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SphI GCATGC 1 cut(s) 291
Sse9I AATT 1 cut(s) 226
SsiI CCGC 2 cut(s) 80, 468
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 75, 87, 404, 473
TasI AATT 1 cut(s) 226
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TseI GCWGC 2 cut(s) 170, 173
TspDTI ATGAA 4 cut(s) 162, 261, 363, 419
Tth111I GACNNNGTC 1 cut(s) 349
XceI RCATGY 2 cut(s) 200, 291
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.