Rorug02G0483300

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015185
Physical Location & Seq
Reverse (-)
61314319 .. 61316590
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0483300.1

Sequence Viewer

Length: 795 bp
ATGGCCTCGACTGCATGCTTTTTGCACCACCATGCACTCACTACTTCAACTGCCGCTAGGTCTTCCTCGTCGCAGCGCCAAGTGGTGAGCATCAAGCCTAACCAGGTTGTGATCTGCAGGGCCCAGAAGCAGTCTGCCCAGGAGGAAGACGGCGGTGCTGTCTCTCGCCGTTTGGCTCTTACCCTCCTCATCGGTGGCGCTGCTCTTAGCACTAAGGTTGCACCTGCTGATGCAGCTTATGGAGAATCCGCCAATGTTTTCGGAAAGCCGAAGACAAACACAGAGTTCTTGACATATGCTGGAGAAGGGTTCAAGCTGTCGATCCCTGCAAAATGGAACCCCAGCAAAGAAGTGGAATATCCGGGTCAAGTTCTGAGATACGAGGACAACTTCGACATTACCAGCAACTTGACTGTCACAATCAACCCAACTGACAAGAAGTCTATCACTGACTTTGGTAGCCCTGAACAATTTCTCAACCAGGTGGACTATTTGCTAGGCAAACAAGCCTACTTTGGGAAGACTGATTCTGAGGGAGGTTTCGACTCAGGTGCTGTGGCCACAGCCAACATATTGGAATCTGCAATTCAGACTGTTGATGGGAAACCATACTACTTCATCTCTGTGTTGACAAGGACAGCTGATGGGGATGAAGGTGGTAAGCACCAACTGATCACTGCCACCGTGAAGGACGGCAAGCTTTACATCTGCAAGGCCCAAGCCGGAGACAAGAGGTGGTTCAAGGGAGCAAAGAAGTTCGTGGAGAACACTGTAACCTCTTTCAGTGTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

264

Amino Acids

28.41

Weight (kDa)

8.29

Isoelectric Point (pI)

33.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 96 - 263 1.3e-37 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32280 AT2G32280
fragaria_vesca FvH4_6g43740 FvH4_6g43740
malus_domestica MD09G1103300.v1.1 MD17G1091200.v1.1
prunus_persica Prupe.3G222400_v2.0.a1
pyrus_communis pycom09g02680 pycom17g08810
rosa_chinensis RchiOBHm_Chr2g0160471
rosa_laevigata RLG00000021216
rosa_multiflora Rmu_sc0002771.1_g000002
rosa_roxburghii Rroxscaffold_2G00089800
rosa_rugosa Rorug02G0483300
rosa_samantha Rh2DG570900
rosa_wichuraiana Rw2G045410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 232
AciI CCGC 3 cut(s) 54, 153, 249
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 558
AfiI CCNNNNNNNGG 1 cut(s) 516
AgsI TTSAA 3 cut(s) 48, 313, 742
AhdI GACNNNNNGTC 1 cut(s) 439
AjnI CCWGG 3 cut(s) 102, 138, 480
AluBI AGCT 4 cut(s) 236, 316, 641, 700
AluI AGCT 4 cut(s) 236, 316, 641, 700
Alw26I GTCTC 2 cut(s) 166, 720
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 554
AoxI GGCC 4 cut(s) 3, 120, 558, 714
ApaI GGGCCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 73, 200, 233
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 2 cut(s) 78, 200
AspS9I GGNCC 3 cut(s) 120, 121, 715
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 124
BalI TGGCCA 1 cut(s) 560
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 4 cut(s) 54, 153, 278, 527
BbvI GCAGC 3 cut(s) 85, 187, 245
BccI CCATC 2 cut(s) 593, 638
BceAI ACGGC 3 cut(s) 153, 166, 709
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BciT130I CCWGG 3 cut(s) 104, 140, 482
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 166, 720
BfaI CTAG 2 cut(s) 57, 497
BfmI CTRYAG 1 cut(s) 115
BfoI RGCGCY 2 cut(s) 79, 201
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 4 cut(s) 54, 74, 201, 234
BlsI GCNGC 4 cut(s) 55, 75, 202, 235
Bme1390I CCNGG 4 cut(s) 104, 140, 363, 482
BmeRI GACNNNNNGTC 1 cut(s) 439
BmgT120I GGNCC 3 cut(s) 120, 121, 715
BmiI GGNNCC 2 cut(s) 122, 338
BmrFI CCNGG 4 cut(s) 104, 140, 363, 482
BmsI GCATC 2 cut(s) 99, 220
BpiI GAAGAC 4 cut(s) 54, 153, 278, 527
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 516
BseBI CCWGG 3 cut(s) 104, 140, 482
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 655
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 3 cut(s) 365, 522, 561
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 85, 187, 245
BseYI CCCAGC 1 cut(s) 341
BshFI GGCC 4 cut(s) 5, 122, 560, 716
BsiSI CCGG 2 cut(s) 362, 723
BslI CCNNNNNNNGG 1 cut(s) 516
BsmAI GTCTC 2 cut(s) 166, 720
BsnI GGCC 4 cut(s) 5, 122, 560, 716
Bsp120I GGGCCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 111, 321, 672
BspACI CCGC 3 cut(s) 54, 153, 249
BspANI GGCC 4 cut(s) 5, 122, 560, 716
BspCNI CTCAG 3 cut(s) 366, 523, 560
BspLI GGNNCC 2 cut(s) 122, 338
BspMAI CTGCAG 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 111, 321, 672
Bst2UI CCWGG 3 cut(s) 104, 140, 482
Bst4CI ACNGT 4 cut(s) 415, 595, 685, 772
BstC8I GCNNGC 2 cut(s) 16, 698
BstDEI CTNAG 5 cut(s) 206, 213, 374, 531, 547
BstF5I GGATG 1 cut(s) 655
BstH2I RGCGCY 2 cut(s) 79, 201
BstHHI GCGC 2 cut(s) 78, 200
BstKTI GATC 3 cut(s) 114, 324, 675
BstMAI GTCTC 2 cut(s) 166, 720
BstMBI GATC 3 cut(s) 111, 321, 672
BstMWI GCNNNNNNNGC 2 cut(s) 11, 233
BstNI CCWGG 3 cut(s) 104, 140, 482
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 4 cut(s) 102, 138, 361, 480
BstSFI CTRYAG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 85, 187, 245
BstV2I GAAGAC 4 cut(s) 54, 153, 278, 527
BstXI CCANNNNNNTGG 1 cut(s) 574
BsuRI GGCC 4 cut(s) 5, 122, 560, 716
BtsCI GGATG 1 cut(s) 655
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 4 cut(s) 447, 675, 768, 790
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 16, 698
CaiI CAGNNNCTG 1 cut(s) 554
CfoI GCGC 2 cut(s) 78, 200
Cfr13I GGNCC 3 cut(s) 120, 121, 715
CsiI ACCWGGT 2 cut(s) 102, 480
CviAII CATG 2 cut(s) 15, 32
DdeI CTNAG 5 cut(s) 206, 213, 374, 531, 547
DpnI GATC 3 cut(s) 113, 323, 674
DpnII GATC 3 cut(s) 111, 321, 672
DriI GACNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 558
Eam1105I GACNNNNNGTC 1 cut(s) 439
EciI GGCGGA 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 120
EcoRII CCWGG 3 cut(s) 102, 138, 480
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 18, 35
FaiI YATR 7 cut(s) 16, 33, 240, 295, 297, 572, 610
FatI CATG 2 cut(s) 14, 31
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 4 cut(s) 54, 74, 201, 234
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 4 cut(s) 54, 74, 201, 234
FspBI CTAG 2 cut(s) 57, 497
GlaI GCGC 2 cut(s) 77, 199
GluI GCNGC 4 cut(s) 54, 74, 201, 234
GsaI CCCAGC 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 321
HaeII RGCGCY 2 cut(s) 79, 201
HaeIII GGCC 4 cut(s) 5, 122, 560, 716
HapII CCGG 2 cut(s) 362, 723
HhaI GCGC 2 cut(s) 78, 200
Hin1II CATG 2 cut(s) 18, 35
Hin6I GCGC 2 cut(s) 76, 198
HinP1I GCGC 2 cut(s) 76, 198
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 4 cut(s) 245, 527, 545, 578
HpaII CCGG 2 cut(s) 362, 723
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 487, 630
Hpy188I TCNGA 4 cut(s) 263, 375, 532, 591
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 487, 630
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 299, 647, 682
HpyCH4III ACNGT 4 cut(s) 415, 595, 685, 772
HpyCH4V TGCA 9 cut(s) 14, 25, 35, 117, 221, 233, 329, 584, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 233
HpyF3I CTNAG 5 cut(s) 206, 213, 374, 531, 547
Hsp92II CATG 2 cut(s) 18, 35
HspAI GCGC 2 cut(s) 76, 198
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 3 cut(s) 111, 321, 672
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 3 cut(s) 85, 187, 245
LweI GCATC 2 cut(s) 99, 220
MabI ACCWGGT 2 cut(s) 102, 480
MaeI CTAG 2 cut(s) 57, 497
MaeIII GTNAC 2 cut(s) 415, 772
MalI GATC 3 cut(s) 113, 323, 674
MboI GATC 3 cut(s) 111, 321, 672
MboII GAAGA 4 cut(s) 54, 158, 283, 532
MhlI GDGCHC 1 cut(s) 124
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 2 cut(s) 470, 585
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 1 cut(s) 539
Mox20I TGGCCA 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 560
MslI CAYNNNNRTG 2 cut(s) 30, 623
Msp20I TGGCCA 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 641
MspI CCGG 2 cut(s) 362, 723
MspR9I CCNGG 4 cut(s) 104, 140, 363, 482
MvaI CCWGG 3 cut(s) 104, 140, 482
MwoI GCNNNNNNNGC 2 cut(s) 11, 233
NciI CCSGG 1 cut(s) 363
NdeI CATATG 1 cut(s) 295
NdeII GATC 3 cut(s) 111, 321, 672
NlaIII CATG 2 cut(s) 18, 35
NlaIV GGNNCC 2 cut(s) 122, 338
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 18
PaeI GCATGC 1 cut(s) 18
PaqCI CACCTGC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 245, 527, 578
PkrI GCNGC 4 cut(s) 55, 75, 202, 235
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Psp6I CCWGG 3 cut(s) 102, 138, 480
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 3 cut(s) 102, 138, 480
PspN4I GGNNCC 2 cut(s) 122, 338
PspOMI GGGCCC 1 cut(s) 120
PspPI GGNCC 3 cut(s) 120, 121, 715
PstI CTGCAG 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 641
RseI CAYNNNNRTG 2 cut(s) 30, 623
SatI GCNGC 4 cut(s) 54, 74, 201, 234
Sau3AI GATC 3 cut(s) 111, 321, 672
Sau96I GGNCC 3 cut(s) 120, 121, 715
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 4 cut(s) 104, 140, 363, 482
SduI GDGCHC 1 cut(s) 124
SexAI ACCWGGT 2 cut(s) 102, 480
SfaNI GCATC 2 cut(s) 99, 220
SfcI CTRYAG 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 30, 623
SphI GCATGC 1 cut(s) 18
Sse9I AATT 2 cut(s) 470, 585
SsiI CCGC 3 cut(s) 54, 153, 249
SspMI CTAG 2 cut(s) 57, 497
StyD4I CCNGG 4 cut(s) 102, 138, 361, 480
TaaI ACNGT 4 cut(s) 415, 595, 685, 772
TaqI TCGA 4 cut(s) 8, 320, 393, 543
TasI AATT 2 cut(s) 470, 585
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 3 cut(s) 245, 527, 578
TscAI CASTG 4 cut(s) 454, 682, 775, 790
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 3 cut(s) 73, 200, 233
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 607, 666
TspRI CASTG 4 cut(s) 454, 682, 775, 790
XceI RCATGY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 57, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.