Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016078

Physical Location & Seq

Genomic Coordinates Reverse (-)

10920307 .. 10922289

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1125500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAGACTGAAGCAAAACGCTTCGCCATCGAGATCGAAGACGACGACGAGTTCCTTTCTCAGGTAGCGGCGGCCGAGGCCGAAGCGCTCGCCTACAAGCGCCGTCGCATCAGCACTGCGCCCTCACAAAACGCCGCCGTTTCCTTCAATTCCCACGCGAATCAGAAATTAGGCGCGGACGACGACGGCGGCGGCCTCTACACCGCTGCTCTCAAAGGAAGCCAGCGAGCAGTCCCTGACACTCCCCGCGGCGGATTATCCAGAGGGAGGGTCAATGTCGGGGCGGCCGGAAACGATGGCGTCTCCGCTGGTGGTGATACCTGCTTCAAGTGCGGGAAACCGGGACATTGGGCCCGCGATTGTGATGCCCCCAGCGGAGGCGGAGGCGGTGGTGGGTATTATGGTAATTTCGGTGGCGGCGACTCTTCGATTTCTGTTCCGGAGAAAAATTGCTCTTGTGGGTATGGAGCCTGCCTGGTCCTCACTGCAAATACTGAGAAGAATCCGGGTCGAAAGTTTTACAAATGCCCTCTGAGACAGGAAAATGGAGGCTGTAGTTTCTTTGAGTGGTGTGACAATGCTGCTACTGGGCCAAATGCCGTGGCTACTACTGGTAGCGCTACTAGAAGCCATAGCTATGCTGCATCTGACTCTTCGTTTCCAGCTCTAGAATGTCCCTGCGGTGGCGGTGTCTGCTTAATCTTAACTGCCAAAACTGGGAAAAATATCGGCAGCCAATTCTACCGTTGTCCGGCTAAGGAGGGAAGCTCTTGTGGGTTCTTCAAGTGGTGCAATGAGCATATTGCGGCAGCCGCTGGTGTTCCAGGTCGTGGTTTGAGCGAGGCAAACAGCAAAGGGTATGGTGTAACTACTGGTTCTTCCTGCTTTAAGTGTGGAAAGGAAGGGCATTGGGCAAGAGATTGCCCAACAGTTCCTTCGTATAATGCTGCTCCAGCCGAAATGGGGGCACGGTCTGCTTCAGGGGGCTCTTGCTATAAGTGCGGCAAGCCAGGGCACTGGGCGCGGGACTGCCCTTCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-GRF

Protein Analysis

348

Amino Acids

35.61

Weight (kDa)

8.3

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	107 - 122	3.4e-08	Zinc knuckle
Zn_ribbon_GRF	PF06839	150 - 193	5.1e-14	GRF zinc finger
Zn_ribbon_GRF	PF06839	225 - 266	2.3e-15	GRF zinc finger
zf-CCHC	PF00098	294 - 309	2.4e-08	Zinc knuckle
zf-CCHC	PF00098	330 - 346	8e-09	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42860
fragaria_vesca	FvH4_6g39844 FvH4_6g39844 FvH4_6g39844
malus_domestica	MD17G1125500.v1.1
prunus_persica	Prupe.3G190200_v2.0.a1
pyrus_communis	pycom17g11770
rosa_chinensis	RchiOBHm_Chr2g0154211
rosa_laevigata	RLG00000020764
rosa_roxburghii	Rroxscaffold_2G00094460
rosa_samantha	Rh2AG507900 Rh2BG518900 Rh2CG493200 Rh2DG529800
rosa_wichuraiana	Rw2G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccII	CGCG	5 cut(s)	158, 176, 249, 357, 1024
AccIII	TCCGGA	1 cut(s)	439
AcoI	YGGCCR	2 cut(s)	72, 285
AcuI	CTGAAG	3 cut(s)	30, 963, 1020
AcyI	GRCGYC	1 cut(s)	300
AfeI	AGCGCT	2 cut(s)	87, 619
AfiI	CCNNNNNNNGG	9 cut(s)	61, 251, 267, 377, 683, 717, 751, 830, 963
AgsI	TTSAA	3 cut(s)	148, 328, 784
AjnI	CCWGG	3 cut(s)	474, 823, 1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	919, 951
AluBI	AGCT	3 cut(s)	636, 665, 768
AluI	AGCT	3 cut(s)	636, 665, 768
Alw26I	GTCTC	2 cut(s)	307, 529
AlwNI	CAGNNNCTG	2 cut(s)	236, 815
Aor13HI	TCCGGA	1 cut(s)	439
Aor51HI	AGCGCT	2 cut(s)	87, 619
AoxI	GGCC	6 cut(s)	72, 78, 193, 285, 351, 590
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	6 cut(s)	206, 581, 641, 732, 809, 947
AspLEI	GCGC	6 cut(s)	88, 102, 121, 176, 620, 1024
AspS9I	GGNCC	4 cut(s)	351, 352, 478, 590
AsuC2I	CCSGG	2 cut(s)	342, 507
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	3 cut(s)	355, 970, 1017
BanII	GRGCYC	2 cut(s)	355, 989
BbsI	GAAGAC	2 cut(s)	11, 45
BbvI	GCAGC	6 cut(s)	193, 568, 628, 744, 821, 934
BccI	CCATC	2 cut(s)	35, 290
BceAI	ACGGC	4 cut(s)	87, 122, 202, 584
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	3 cut(s)	476, 825, 1011
BcnI	CCSGG	2 cut(s)	342, 507
BcoDI	GTCTC	2 cut(s)	307, 529
BfaI	CTAG	2 cut(s)	624, 668
BfmI	CTRYAG	1 cut(s)	553
BfoI	RGCGCY	3 cut(s)	89, 103, 621
BfuAI	ACCTGC	1 cut(s)	329
Bme1390I	CCNGG	5 cut(s)	342, 476, 507, 825, 1011
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	4 cut(s)	351, 352, 478, 590
BmiI	GGNNCC	2 cut(s)	353, 469
BmrFI	CCNGG	5 cut(s)	342, 476, 507, 825, 1011
BmrI	ACTGGG	3 cut(s)	597, 726, 1027
BmsI	GCATC	3 cut(s)	117, 355, 653
BmuI	ACTGGG	3 cut(s)	597, 726, 1027
BpiI	GAAGAC	2 cut(s)	11, 45
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpmI	CTGGAG	1 cut(s)	936
Bpu10I	CCTNAGC	1 cut(s)	756
BpuMI	CCSGG	2 cut(s)	342, 507
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	4 cut(s)	75, 247, 600, 1010
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	9 cut(s)	61, 251, 267, 377, 683, 717, 751, 830, 963
Bse1I	ACTGG	5 cut(s)	592, 616, 721, 877, 1022
Bse3DI	GCAATG	1 cut(s)	799
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	3 cut(s)	476, 825, 1011
BseDI	CCNNGG	4 cut(s)	75, 247, 600, 1010
BseLI	CCNNNNNNNGG	9 cut(s)	61, 251, 267, 377, 683, 717, 751, 830, 963
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	3 cut(s)	74, 486, 524
BseNI	ACTGG	5 cut(s)	592, 616, 721, 877, 1022
BseSI	GKGCMC	3 cut(s)	355, 970, 1017
BseX3I	CGGCCG	2 cut(s)	72, 285
BseXI	GCAGC	6 cut(s)	193, 568, 628, 744, 821, 934
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	5 cut(s)	158, 176, 249, 357, 1024
Bsh1285I	CGRYCG	2 cut(s)	75, 288
BshFI	GGCC	6 cut(s)	74, 80, 195, 287, 353, 592
BsiEI	CGRYCG	2 cut(s)	75, 288
BsiSI	CCGG	5 cut(s)	288, 341, 440, 506, 752
BslFI	GGGAC	4 cut(s)	218, 357, 660, 1040
BslI	CCNNNNNNNGG	9 cut(s)	61, 251, 267, 377, 683, 717, 751, 830, 963
BsmAI	GTCTC	2 cut(s)	307, 529
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	4 cut(s)	218, 357, 660, 1040
BsnI	GGCC	6 cut(s)	74, 80, 195, 287, 353, 592
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	4 cut(s)	355, 970, 989, 1017
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	33
BspANI	GGCC	6 cut(s)	74, 80, 195, 287, 353, 592
BspCNI	CTCAG	3 cut(s)	73, 487, 525
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	5 cut(s)	158, 176, 249, 357, 1024
BspLI	GGNNCC	2 cut(s)	353, 469
BspMI	ACCTGC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	5 cut(s)	592, 616, 721, 877, 1022
BssECI	CCNNGG	4 cut(s)	75, 247, 600, 1010
BssMI	GATC	1 cut(s)	33
BssNI	GRCGYC	1 cut(s)	300
Bst2UI	CCWGG	3 cut(s)	476, 825, 1011
Bst4CI	ACNGT	3 cut(s)	746, 931, 972
Bst6I	CTCTTC	2 cut(s)	430, 658
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstC8I	GCNNGC	6 cut(s)	90, 224, 228, 355, 472, 1007
BstDEI	CTNAG	4 cut(s)	60, 495, 533, 756
BstDSI	CCRYGG	2 cut(s)	247, 600
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstFNI	CGCG	5 cut(s)	158, 176, 249, 357, 1024
BstH2I	RGCGCY	3 cut(s)	89, 103, 621
BstHHI	GCGC	6 cut(s)	88, 102, 121, 176, 620, 1024
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	307, 529
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	2 cut(s)	75, 288
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 330, 693, 812, 953, 974, 999, 1021
BstNI	CCWGG	3 cut(s)	476, 825, 1011
BstSCI	CCNGG	5 cut(s)	340, 474, 505, 823, 1009
BstSFI	CTRYAG	1 cut(s)	553
BstSLI	GKGCMC	3 cut(s)	355, 970, 1017
BstUI	CGCG	5 cut(s)	158, 176, 249, 357, 1024
BstV1I	GCAGC	6 cut(s)	193, 568, 628, 744, 821, 934
BstV2I	GAAGAC	2 cut(s)	11, 45
BstXI	CCANNNNNNTGG	1 cut(s)	1017
BstZI	CGGCCG	2 cut(s)	72, 285
BsuRI	GGCC	6 cut(s)	74, 80, 195, 287, 353, 592
BtgI	CCRYGG	2 cut(s)	247, 600
BtsI	GCAGTG	2 cut(s)	114, 483
BtsIMutI	CAGTG	3 cut(s)	114, 483, 1015
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	6 cut(s)	90, 224, 228, 355, 472, 1007
CaiI	CAGNNNCTG	2 cut(s)	236, 815
CfoI	GCGC	6 cut(s)	88, 102, 121, 176, 620, 1024
Cfr13I	GGNCC	4 cut(s)	351, 352, 478, 590
Cfr42I	CCGCGG	1 cut(s)	250
CseI	GACGC	1 cut(s)	289
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
DdeI	CTNAG	4 cut(s)	60, 495, 533, 756
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	2 cut(s)	72, 285
EagI	CGGCCG	2 cut(s)	72, 285
Eam1104I	CTCTTC	2 cut(s)	430, 658
EarI	CTCTTC	2 cut(s)	430, 658
EciI	GGCGGA	2 cut(s)	267, 396
EclXI	CGGCCG	2 cut(s)	72, 285
Eco24I	GRGCYC	2 cut(s)	355, 989
Eco47I	GGWCC	1 cut(s)	478
Eco47III	AGCGCT	2 cut(s)	87, 619
Eco52I	CGGCCG	2 cut(s)	72, 285
Eco57I	CTGAAG	3 cut(s)	30, 963, 1020
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	474, 823, 1009
EcoT38I	GRGCYC	2 cut(s)	355, 989
Esp3I	CGTCTC	1 cut(s)	307
FaiI	YATR	8 cut(s)	402, 465, 633, 639, 801, 861, 942, 996
FaqI	GGGAC	4 cut(s)	218, 357, 660, 1040
FauI	CCCGC	4 cut(s)	254, 326, 362, 1017
FriOI	GRGCYC	2 cut(s)	355, 989
FspBI	CTAG	2 cut(s)	624, 668
GlaI	GCGC	6 cut(s)	87, 101, 120, 175, 619, 1023
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	936
HaeII	RGCGCY	3 cut(s)	89, 103, 621
HaeIII	GGCC	6 cut(s)	74, 80, 195, 287, 353, 592
HapII	CCGG	5 cut(s)	288, 341, 440, 506, 752
HgaI	GACGC	1 cut(s)	289
HhaI	GCGC	6 cut(s)	88, 102, 121, 176, 620, 1024
Hin1I	GRCGYC	1 cut(s)	300
Hin6I	GCGC	6 cut(s)	86, 100, 119, 174, 618, 1022
HinP1I	GCGC	6 cut(s)	86, 100, 119, 174, 618, 1022
HinfI	GANTC	4 cut(s)	160, 422, 502, 650
HpaII	CCGG	5 cut(s)	288, 341, 440, 506, 752
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	3 cut(s)	165, 534, 649
Hpy188III	TCNNGA	4 cut(s)	31, 261, 440, 668
Hpy99I	CGWCG	5 cut(s)	47, 50, 108, 185, 188
HpyAV	CCTTC	4 cut(s)	154, 896, 945, 1044
HpyCH4III	ACNGT	3 cut(s)	746, 931, 972
HpyCH4V	TGCA	3 cut(s)	488, 644, 792
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 330, 693, 812, 953, 974, 999, 1021
HpyF3I	CTNAG	4 cut(s)	60, 495, 533, 756
Hsp92I	GRCGYC	1 cut(s)	300
HspAI	GCGC	6 cut(s)	86, 100, 119, 174, 618, 1022
Kpn2I	TCCGGA	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	467, 955
Lsp1109I	GCAGC	6 cut(s)	193, 568, 628, 744, 821, 934
LweI	GCATC	3 cut(s)	117, 355, 653
MaeI	CTAG	2 cut(s)	624, 668
MaeIII	GTNAC	2 cut(s)	572, 865
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	7 cut(s)	16, 50, 417, 511, 645, 772, 870
MhlI	GDGCHC	4 cut(s)	355, 970, 989, 1017
MluCI	AATT	5 cut(s)	148, 167, 406, 448, 737
MlyI	GAGTC	2 cut(s)	416, 644
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	4 cut(s)	698, 704, 888, 1042
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	5 cut(s)	206, 249, 308, 375, 815
MspI	CCGG	5 cut(s)	288, 341, 440, 506, 752
MspR9I	CCNGG	5 cut(s)	342, 476, 507, 825, 1011
MvaI	CCWGG	3 cut(s)	476, 825, 1011
MvnI	CGCG	5 cut(s)	158, 176, 249, 357, 1024
MwoI	GCNNNNNNNGC	8 cut(s)	77, 330, 693, 812, 953, 974, 999, 1021
NciI	CCSGG	2 cut(s)	342, 507
NdeII	GATC	1 cut(s)	33
NlaIV	GGNNCC	2 cut(s)	353, 469
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 417
PfeI	GAWTC	2 cut(s)	160, 502
PflMI	CCANNNNNTGG	1 cut(s)	830
PleI	GAGTC	2 cut(s)	416, 644
PpsI	GAGTC	2 cut(s)	416, 644
Psp6I	CCWGG	3 cut(s)	474, 823, 1009
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	3 cut(s)	474, 823, 1009
PspN4I	GGNNCC	2 cut(s)	353, 469
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	4 cut(s)	351, 352, 478, 590
PstNI	CAGNNNCTG	2 cut(s)	236, 815
RseI	CAYNNNNRTG	1 cut(s)	636
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	698, 704, 888, 1042
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	4 cut(s)	351, 352, 478, 590
SchI	GAGTC	2 cut(s)	416, 644
ScrFI	CCNGG	5 cut(s)	342, 476, 507, 825, 1011
SduI	GDGCHC	4 cut(s)	355, 970, 989, 1017
SetI	ASST	7 cut(s)	66, 323, 638, 667, 770, 829, 1042
SfaNI	GCATC	3 cut(s)	117, 355, 653
SfcI	CTRYAG	1 cut(s)	553
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	636
Sse9I	AATT	5 cut(s)	148, 167, 406, 448, 737
SspMI	CTAG	2 cut(s)	624, 668
StyD4I	CCNGG	5 cut(s)	340, 474, 505, 823, 1009
TaaI	ACNGT	3 cut(s)	746, 931, 972
TaqI	TCGA	4 cut(s)	30, 36, 428, 511
TasI	AATT	5 cut(s)	148, 167, 406, 448, 737
TfiI	GAWTC	2 cut(s)	160, 502
Tru1I	TTAA	4 cut(s)	698, 704, 888, 1042
Tru9I	TTAA	4 cut(s)	698, 704, 888, 1042
TscAI	CASTG	3 cut(s)	121, 490, 1022
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	6 cut(s)	206, 581, 641, 732, 809, 947
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	121, 490, 1022
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	478
XagI	CCTNNNNNAGG	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	667
XspI	CTAG	2 cut(s)	624, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.