Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016078

Physical Location & Seq

Genomic Coordinates Forward (+)

75718703 .. 75719609

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG529800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAGACGGAAGCACCCGGATTTCTGATCCAAATCGACGACGACGTAGACGACGACTTCCTTTCTCAGGTTGCCGCCGCCGAGGCCCATGCTCTCGCGAACAAGCGCCGCCGTATCGCCACTCCCACGCCCTCCCCAAACGCCGTCGCGTCGGCACCTCCGCCACCAAGCCCAGCGAATCCGAAGGAGAGATCAGACTCCGAAGCCGACGGCGGTCTCTACATCGCGGCGCTCAAAGGAAACCAGAGCGCGTTCTCCGAGCCTCCGCGCGGCGGTGGATTTGGCAGAGGGCGAGTCGGCGGGGCCGTAGCGGCCTCGGGAAACGACGGCGTTTTGGGCGGTGATGCGTGCTTCAAGTGCGGGAAATCGGGACACTGGGCTCGCGATTGCGATGCCCCAGGCGGAGGAAGAGGAGGAGGCGGGGGGTATAGTGGTAATTACGGCGGCGGAGGGTATAATGGTAATTACGGCGGCGACGCTGCGTCCGCCATTTTGTTTCCTGAGAAAAGCTGCCCCTGTGGATCTGGAACCTGCGTGGTGCTCACTGCAAATACTGAGAAGAATCGAGGTCGAAAATTCTACAAATGCCCACTTAGACAGGAAAATGGGGGTTGTGGTTTCTTTGAGTGGTGTGATAATGCTTCTGGGCCTAATGCCATGGCTGGTGCTGGTAGTGGTAGCTTTAGTAGGACCCAAAACTATGCATCTGATTCTACATTTCCAGCTCTTGAATGTCCCTGTGGTGGTGGGCAATGCCGAATCTTAACAGCTAAAACGGGCAAAAATATCGGCAGCCAATTCTATCGCTGTCCTGGAAATGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-GRF

Protein Analysis

274

Amino Acids

27.84

Weight (kDa)

7.41

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	116 - 131	2e-07	Zinc knuckle
Zn_ribbon_GRF	PF06839	170 - 213	5.2e-16	GRF zinc finger
Zn_ribbon_GRF	PF06839	245 - 273	1.7e-07	GRF zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42860
fragaria_vesca	FvH4_6g39844 FvH4_6g39844 FvH4_6g39844
malus_domestica	MD17G1125500.v1.1
prunus_persica	Prupe.3G190200_v2.0.a1
pyrus_communis	pycom17g11770
rosa_chinensis	RchiOBHm_Chr2g0154211
rosa_laevigata	RLG00000020764
rosa_roxburghii	Rroxscaffold_2G00094460
rosa_samantha	Rh2AG507900 Rh2BG518900 Rh2CG493200 Rh2DG529800
rosa_wichuraiana	Rw2G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	7 cut(s)	98, 149, 227, 251, 268, 270, 384
AclWI	GGATC	2 cut(s)	22, 529
AcsI	RAATTY	1 cut(s)	575
AfiI	CCNNNNNNNGG	5 cut(s)	67, 269, 272, 404, 743
AgsI	TTSAA	2 cut(s)	355, 731
AhdI	GACNNNNNGTC	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	397, 811
AluBI	AGCT	4 cut(s)	510, 681, 725, 770
AluI	AGCT	4 cut(s)	510, 681, 725, 770
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	22, 529
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	4 cut(s)	84, 303, 312, 647
ApeKI	GCWGC	3 cut(s)	479, 510, 792
ApoI	RAATTY	1 cut(s)	575
AspLEI	GCGC	4 cut(s)	108, 232, 251, 270
AspS9I	GGNCC	4 cut(s)	85, 303, 647, 690
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	466, 497, 804
BceAI	ACGGC	7 cut(s)	96, 128, 226, 290, 343, 457, 484
BcgI	CGANNNNNNTGC	6 cut(s)	71, 105, 374, 408, 769, 803
BciT130I	CCWGG	2 cut(s)	399, 813
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	109, 233
BfuAI	ACCTGC	1 cut(s)	539
BglI	GCCNNNNNGGC	2 cut(s)	83, 311
Bme1390I	CCNGG	3 cut(s)	18, 399, 813
Bme18I	GGWCC	1 cut(s)	690
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	316
BmgT120I	GGNCC	4 cut(s)	85, 303, 647, 690
BmiI	GGNNCC	4 cut(s)	156, 304, 529, 692
BmrFI	CCNGG	3 cut(s)	18, 399, 813
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	334, 382, 713
BmuI	ACTGGG	1 cut(s)	385
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	81, 315, 397, 657
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 269, 272, 404, 743
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	758
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	399, 813
BseDI	CCNNGG	4 cut(s)	81, 315, 397, 657
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	5 cut(s)	67, 269, 272, 404, 743
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	3 cut(s)	80, 492, 546
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	426, 429
BseXI	GCAGC	3 cut(s)	466, 497, 804
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	7 cut(s)	98, 149, 227, 251, 268, 270, 384
BshFI	GGCC	4 cut(s)	86, 305, 314, 649
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	384, 720
BslI	CCNNNNNNNGG	5 cut(s)	67, 269, 272, 404, 743
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	384, 720
BsnI	GGCC	4 cut(s)	86, 305, 314, 649
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	382, 543
Bsp143I	GATC	3 cut(s)	27, 191, 521
Bsp19I	CCATGG	1 cut(s)	657
Bsp68I	TCGCGA	2 cut(s)	98, 384
BspANI	GGCC	4 cut(s)	86, 305, 314, 649
BspCNI	CTCAG	3 cut(s)	79, 493, 547
BspFNI	CGCG	7 cut(s)	98, 149, 227, 251, 268, 270, 384
BspLI	GGNNCC	4 cut(s)	156, 304, 529, 692
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	2 cut(s)	22, 529
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	758
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	4 cut(s)	81, 315, 397, 657
BssMI	GATC	3 cut(s)	27, 191, 521
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	2 cut(s)	399, 813
Bst6I	CTCTTC	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	349, 382
BstDEI	CTNAG	4 cut(s)	66, 501, 555, 593
BstDSI	CCRYGG	1 cut(s)	657
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstFNI	CGCG	7 cut(s)	98, 149, 227, 251, 268, 270, 384
BstH2I	RGCGCY	2 cut(s)	109, 233
BstHHI	GCGC	4 cut(s)	108, 232, 251, 270
BstKTI	GATC	3 cut(s)	30, 194, 524
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	27, 191, 521
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 311, 336, 357, 485
BstNI	CCWGG	2 cut(s)	399, 813
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	3 cut(s)	16, 397, 811
BstUI	CGCG	7 cut(s)	98, 149, 227, 251, 268, 270, 384
BstV1I	GCAGC	3 cut(s)	466, 497, 804
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	86, 305, 314, 649
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	2 cut(s)	208, 405
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	373, 543
BtuMI	TCGCGA	2 cut(s)	98, 384
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	2 cut(s)	349, 382
CfoI	GCGC	4 cut(s)	108, 232, 251, 270
Cfr13I	GGNCC	4 cut(s)	85, 303, 647, 690
CseI	GACGC	3 cut(s)	138, 471, 485
CviAII	CATG	2 cut(s)	89, 658
DdeI	CTNAG	4 cut(s)	66, 501, 555, 593
DpnI	GATC	3 cut(s)	29, 193, 523
DpnII	GATC	3 cut(s)	27, 191, 521
DriI	GACNNNNNGTC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	403
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	403
EciI	GGCGGA	4 cut(s)	150, 417, 462, 475
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRII	CCWGG	2 cut(s)	397, 811
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	2 cut(s)	92, 661
FaiI	YATR	5 cut(s)	90, 429, 456, 659, 702
FaqI	GGGAC	2 cut(s)	384, 720
FatI	CATG	2 cut(s)	88, 657
FauI	CCCGC	3 cut(s)	293, 353, 413
FblI	GTMKAC	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	382
GlaI	GCGC	4 cut(s)	107, 231, 250, 269
GsaI	CCCAGC	1 cut(s)	176
HaeII	RGCGCY	2 cut(s)	109, 233
HaeIII	GGCC	4 cut(s)	86, 305, 314, 649
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	3 cut(s)	138, 471, 485
HhaI	GCGC	4 cut(s)	108, 232, 251, 270
Hin1II	CATG	2 cut(s)	92, 661
Hin6I	GCGC	4 cut(s)	106, 230, 249, 268
HinP1I	GCGC	4 cut(s)	106, 230, 249, 268
HinfI	GANTC	6 cut(s)	178, 197, 294, 562, 710, 759
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	6 cut(s)	27, 183, 196, 202, 259, 709
Hpy188III	TCNNGA	7 cut(s)	97, 318, 369, 383, 500, 525, 728
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	9 cut(s)	41, 44, 47, 56, 149, 154, 212, 329, 479
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	548, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 311, 336, 357, 485
HpyF3I	CTNAG	4 cut(s)	66, 501, 555, 593
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	92, 661
HspAI	GCGC	4 cut(s)	106, 230, 249, 268
Kzo9I	GATC	3 cut(s)	27, 191, 521
Lsp1109I	GCAGC	3 cut(s)	466, 497, 804
LweI	GCATC	3 cut(s)	334, 382, 713
MaeII	ACGT	1 cut(s)	45
MalI	GATC	3 cut(s)	29, 193, 523
MboI	GATC	3 cut(s)	27, 191, 521
MboII	GAAGA	3 cut(s)	16, 420, 571
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	382, 543
MluCI	AATT	4 cut(s)	436, 463, 575, 797
MlyI	GAGTC	2 cut(s)	191, 303
Mph1103I	ATGCAT	1 cut(s)	706
MseI	TTAA	1 cut(s)	764
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	3 cut(s)	18, 399, 813
MvaI	CCWGG	2 cut(s)	399, 813
MvnI	CGCG	7 cut(s)	98, 149, 227, 251, 268, 270, 384
MwoI	GCNNNNNNNGC	5 cut(s)	83, 311, 336, 357, 485
NciI	CCSGG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	657
NdeII	GATC	3 cut(s)	27, 191, 521
NlaIII	CATG	2 cut(s)	92, 661
NlaIV	GGNNCC	4 cut(s)	156, 304, 529, 692
NmeAIII	GCCGAG	1 cut(s)	106
NruI	TCGCGA	2 cut(s)	98, 384
NsiI	ATGCAT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 48, 51, 303
PfeI	GAWTC	4 cut(s)	178, 562, 710, 759
PfoI	TCCNGGA	1 cut(s)	811
PleI	GAGTC	2 cut(s)	191, 302
PpsI	GAGTC	2 cut(s)	191, 302
PpuMI	RGGWCCY	1 cut(s)	690
PshAI	GACNNNNGTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	397, 811
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	397, 811
PspN4I	GGNNCC	4 cut(s)	156, 304, 529, 692
PspPI	GGNCC	4 cut(s)	85, 303, 647, 690
PspPPI	RGGWCCY	1 cut(s)	690
PsuI	RGATCY	1 cut(s)	521
RruI	TCGCGA	2 cut(s)	98, 384
SaqAI	TTAA	1 cut(s)	764
Sau3AI	GATC	3 cut(s)	27, 191, 521
Sau96I	GGNCC	4 cut(s)	85, 303, 647, 690
SchI	GAGTC	2 cut(s)	191, 303
ScrFI	CCNGG	3 cut(s)	18, 399, 813
SduI	GDGCHC	2 cut(s)	382, 543
SetI	ASST	9 cut(s)	48, 72, 160, 512, 533, 571, 683, 727, 772
SfaNI	GCATC	3 cut(s)	334, 382, 713
SfiI	GGCCNNNNNGGCC	1 cut(s)	311
SinI	GGWCC	1 cut(s)	690
Sse9I	AATT	4 cut(s)	436, 463, 575, 797
StyD4I	CCNGG	3 cut(s)	16, 397, 811
StyI	CCWWGG	1 cut(s)	657
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	36, 565, 571
TasI	AATT	4 cut(s)	436, 463, 575, 797
TauI	GCSGC	8 cut(s)	77, 80, 111, 230, 273, 314, 447, 474
TfiI	GAWTC	4 cut(s)	178, 562, 710, 759
Tru1I	TTAA	1 cut(s)	764
Tru9I	TTAA	1 cut(s)	764
TscAI	CASTG	2 cut(s)	380, 550
TseI	GCWGC	3 cut(s)	479, 510, 792
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	380, 550
VpaK11BI	GGWCC	1 cut(s)	690
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.