Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0017915

Physical Location & Seq

Genomic Coordinates Reverse (-)

16130192 .. 16134559

Gene Structure 4368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1163000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTTGATAAAGGCCTTACCCCAGATAAGTATACTTTTGTTGGATTAGTAGATGGGTTATGCAAGGCAAGAAGAGTTGACGAAGCAGTTGATGCGTATCATGGGATTCTCCAGAGTTTCCCTGGACAGGATGCTTATATTCATACTGTGGTCATGGATGGGCTTATAAAGGTCCGTAAATTTAATGCGGCCATTAGAGTGTTTAGAAAAGCAGTTGAAGAGGGCTACACCCTTGATGTTGCAGCATACACAGTTGCCATTATAGGGCTCTTTATGGGTGGTAGAGCTGGAGAGGCTTGGTCACTCTATTGCCATATGAAGGAGGTCGGCTTGGCTCTTACTGTACATACATACAATGTAATGGTCTCTGGTTTTGTTAAAGAAAGAGATCTTAATATGGTTAATTTAATGCTACAAGAGATGATAGAAGCAAAAGTAGAACTGAGCTCCAATACTTTCTTGAGATTATCAAAATTCCTCTGTAGACCATATCATTCTAATTCAGTTATTGAACTATGGATTGAGATGAGAAGTTTGGGTTTGATATCTTCTAAAGTAGTGCAAGAATTACTTTCTGATGAAGTTGCCGAAGGCATGAAAGTAGATGATGGCCTAATTGCATTTTCAGATGTTACTTCAGAAACTGATCGATTTGTGGAGACATCTGGCTCTGAAGATGTTTATGATGTGGCTGCTTCAATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

236

Amino Acids

26.1

Weight (kDa)

4.99

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	4 - 30	1.7e-07	PPR repeat
PPR_2	PF13041	79 - 127	1.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16830
malus_domestica	MD09G1165000.v1.1 MD17G1163000.v1.1 MD17G1163100.v1.1 MD17G1163200.v1.1
prunus_persica	Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1
pyrus_communis	pycom09g08220 pycom09g08230 pycom17g15580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccI	GTMKAC	2 cut(s)	32, 484
AciI	CCGC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	179, 473
AcuI	CTGAAG	2 cut(s)	621, 693
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	127, 264, 319
AgsI	TTSAA	3 cut(s)	218, 512, 699
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	2 cut(s)	287, 447
AluI	AGCT	2 cut(s)	287, 447
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	2 cut(s)	370, 653
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	3 cut(s)	13, 189, 610
ApeKI	GCWGC	2 cut(s)	242, 692
ApoI	RAATTY	2 cut(s)	179, 473
AspS9I	GGNCC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	270, 449
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	254, 679
BccI	CCATC	3 cut(s)	47, 152, 602
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	370, 653
BfmI	CTRYAG	1 cut(s)	481
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	189, 243, 693
BlsI	GCNGC	3 cut(s)	190, 244, 694
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	82, 121
BpmI	CTGGAG	2 cut(s)	95, 309
BpuEI	CTTGAG	1 cut(s)	481
Bsa29I	ATCGAT	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 264, 319
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	649
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	136, 163
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	127, 264, 319
BseMII	CTCAG	1 cut(s)	434
BseXI	GCAGC	2 cut(s)	254, 679
BshFI	GGCC	3 cut(s)	15, 191, 612
BshVI	ATCGAT	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	127, 264, 319
BsmAI	GTCTC	2 cut(s)	370, 653
BsnI	GGCC	3 cut(s)	15, 191, 612
Bso31I	GGTCTC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	270, 449
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	388, 646
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	3 cut(s)	15, 191, 612
BspCNI	CTCAG	1 cut(s)	435
BspDI	ATCGAT	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	388, 646
BssNAI	GTATAC	1 cut(s)	33
Bst1107I	GTATAC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	3 cut(s)	148, 253, 343
Bst6I	CTCTTC	2 cut(s)	67, 213
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	136, 163
BstKTI	GATC	2 cut(s)	391, 649
BstMAI	GTCTC	2 cut(s)	370, 653
BstMBI	GATC	2 cut(s)	388, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 293, 701
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	254, 679
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZ17I	GTATAC	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	15, 191, 612
BsuTUI	ATCGAT	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	136, 163
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	101, 154, 595
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	2 cut(s)	390, 648
DpnII	GATC	2 cut(s)	388, 646
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	67, 213
EarI	CTCTTC	2 cut(s)	67, 213
Ecl136II	GAGCTC	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	270, 449
Eco31I	GGTCTC	1 cut(s)	370
Eco32I	GATATC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	447
Eco57I	CTGAAG	2 cut(s)	621, 693
EcoICRI	GAGCTC	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	546
EcoT38I	GRGCYC	2 cut(s)	270, 449
FaeI	CATG	3 cut(s)	104, 157, 598
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	3 cut(s)	100, 153, 594
FauNDI	CATATG	1 cut(s)	315
FblI	GTMKAC	2 cut(s)	32, 484
Fnu4HI	GCNGC	3 cut(s)	189, 243, 693
FokI	GGATG	2 cut(s)	143, 170
FriOI	GRGCYC	2 cut(s)	270, 449
Fsp4HI	GCNGC	3 cut(s)	189, 243, 693
GluI	GCNGC	3 cut(s)	189, 243, 693
GsuI	CTGGAG	2 cut(s)	95, 309
HaeIII	GGCC	3 cut(s)	15, 191, 612
Hin1II	CATG	3 cut(s)	104, 157, 598
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	33, 79, 485
Hpy188I	TCNGA	4 cut(s)	577, 628, 640, 673
Hpy188III	TCNNGA	2 cut(s)	112, 460
Hpy8I	GTNNAC	3 cut(s)	33, 79, 485
HpyAV	CCTTC	2 cut(s)	313, 584
HpyCH4III	ACNGT	3 cut(s)	148, 253, 343
HpyCH4V	TGCA	4 cut(s)	63, 242, 562, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 293, 701
HpyF3I	CTNAG	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	104, 157, 598
Kzo9I	GATC	2 cut(s)	388, 646
LmnI	GCTCC	1 cut(s)	452
LpnPI	CCDG	8 cut(s)	36, 108, 113, 125, 135, 273, 354, 651
Lsp1109I	GCAGC	2 cut(s)	254, 679
LweI	GCATC	2 cut(s)	82, 121
MaeIII	GTNAC	2 cut(s)	300, 631
MalI	GATC	2 cut(s)	390, 648
MboI	GATC	2 cut(s)	388, 646
MboII	GAAGA	4 cut(s)	84, 230, 540, 686
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	270, 449
MluCI	AATT	6 cut(s)	179, 403, 473, 499, 566, 615
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	4 cut(s)	214, 286, 316, 488
MseI	TTAA	5 cut(s)	183, 378, 393, 402, 407
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	92, 293, 701
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	2 cut(s)	388, 646
NlaIII	CATG	3 cut(s)	104, 157, 598
NmuCI	GTSAC	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	190, 244, 694
PsiI	TTATAA	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	449
SaqAI	TTAA	5 cut(s)	183, 378, 393, 402, 407
SatI	GCNGC	3 cut(s)	189, 243, 693
Sau3AI	GATC	2 cut(s)	388, 646
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	270, 449
SetI	ASST	4 cut(s)	174, 289, 327, 449
SfaNI	GCATC	2 cut(s)	82, 121
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	6 cut(s)	179, 403, 473, 499, 566, 615
SseBI	AGGCCT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	148, 253, 343
TaqI	TCGA	1 cut(s)	649
TasI	AATT	6 cut(s)	179, 403, 473, 499, 566, 615
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	5 cut(s)	183, 378, 393, 402, 407
Tru9I	TTAA	5 cut(s)	183, 378, 393, 402, 407
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	2 cut(s)	242, 692
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	4 cut(s)	131, 332, 594, 611
TspGWI	ACGGA	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	179, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmiI	GTMKAC	2 cut(s)	32, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.