Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0017915

Physical Location & Seq

Genomic Coordinates Forward (+)

6310353 .. 6311060

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCTTGATAGAGGTCTTATACCAGATAAGTATACTTTCGTTGGATTGGTAGATGGGTTGTGTAAGGCAAGAAGAGTTGACGAAGCAGTTGATGTGTACCATGGGATTCTCCGGAGTTTCCCTGGACAGGATGCTTACATTCATACTGTGGTCATGGATGGGCTTATAAAGGTTGGTAAGTTTAATGCGGCCATTAGAGTGTTTAGAAAAGCAGTTGCAGAGGGGTTCACACTTGATGCTGTAGCATACACAGTTGCCATTATTGGGCTCTTTATGGGTGGTAGAGCTGGAGAGGCTTGGTCACTCTATCGCCAGATGAAGGAGGTCAGCTTGGCTCCTACTGCACATACATACAATGTAATGGTTTCTGGTTTTGTTAAAGAAAGAGATCTTAATATGGTTAATTTAATGCTACAAGAGATGATAGAAGCAAAAGTAGAACTGGGCTCCAATACTTTCTTAAGATTATCAAAATTCCTCTGTAGACCATATCATTCTGATTCAGTTATTGAACTATGGATTGAGATGAGAAGTTTGGGTTTGATATCTTCCAAGGTAGTGCAAGAATTACTTTCCGACGAAGTAGCTGAAGGCGTGAAAGTAGATGATGGCCTCGTTGCATTTTTAGGCGTTAGTTCAGAAACTGGCTTATCTGTGGAGACATCTGGCTCTGAAGACGTTTATGATGTGGCTGCTTCAATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

236

Amino Acids

25.76

Weight (kDa)

5.07

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	4 - 32	2.1e-07	PPR repeat
PPR_3	PF13812	66 - 127	5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	79 - 127	2.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16830
malus_domestica	MD09G1165000.v1.1 MD17G1163000.v1.1 MD17G1163100.v1.1 MD17G1163200.v1.1
prunus_persica	Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1
pyrus_communis	pycom09g08220 pycom09g08230 pycom17g15580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccI	GTMKAC	2 cut(s)	32, 484
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	609, 693
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	3 cut(s)	127, 264, 319
AflII	CTTAAG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	512, 699
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	3 cut(s)	287, 330, 587
AluI	AGCT	3 cut(s)	287, 330, 587
Alw26I	GTCTC	1 cut(s)	653
AlwNI	CAGNNNCTG	1 cut(s)	644
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	2 cut(s)	189, 610
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	270, 449
BbsI	GAAGAC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	3 cut(s)	47, 152, 602
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	653
BfmI	CTRYAG	2 cut(s)	240, 481
BfrI	CTTAAG	1 cut(s)	460
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	2 cut(s)	189, 693
BlsI	GCNGC	2 cut(s)	190, 694
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	336, 448
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	121, 226
BmuI	ACTGGG	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	681
BpmI	CTGGAG	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	100, 121, 552
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 264, 319
Bse1I	ACTGG	2 cut(s)	447, 649
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	3 cut(s)	100, 121, 552
BseGI	GGATG	2 cut(s)	136, 163
BseLI	CCNNNNNNNGG	3 cut(s)	127, 264, 319
BseNI	ACTGG	2 cut(s)	447, 649
BseXI	GCAGC	1 cut(s)	679
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	191, 612
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	127, 264, 319
BsmAI	GTCTC	1 cut(s)	653
BsnI	GGCC	2 cut(s)	191, 612
Bsp1286I	GDGCHC	2 cut(s)	270, 449
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	191, 612
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	336, 448
BspTI	CTTAAG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	447, 649
BssECI	CCNNGG	3 cut(s)	100, 121, 552
BssMI	GATC	1 cut(s)	388
BssNAI	GTATAC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	100, 552
Bst1107I	GTATAC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	148, 253
Bst6I	CTCTTC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	460
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	136, 163
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 341
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	2 cut(s)	240, 481
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	681
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZ17I	GTATAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	191, 612
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	136, 163
CaiI	CAGNNNCTG	1 cut(s)	644
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	101, 154
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	100, 552
Eco24I	GRGCYC	2 cut(s)	270, 449
Eco32I	GATATC	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	609, 693
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	100, 552
EcoT38I	GRGCYC	2 cut(s)	270, 449
ErhI	CCWWGG	2 cut(s)	100, 552
FaeI	CATG	2 cut(s)	104, 157
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	2 cut(s)	100, 153
FblI	GTMKAC	2 cut(s)	32, 484
Fnu4HI	GCNGC	2 cut(s)	189, 693
FokI	GGATG	2 cut(s)	143, 170
FriOI	GRGCYC	2 cut(s)	270, 449
Fsp4HI	GCNGC	2 cut(s)	189, 693
GluI	GCNGC	2 cut(s)	189, 693
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	191, 612
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	104, 157
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	106, 500
HpaII	CCGG	1 cut(s)	112
Hpy166II	GTNNAC	5 cut(s)	33, 79, 97, 228, 485
Hpy188I	TCNGA	4 cut(s)	499, 577, 640, 673
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	5 cut(s)	33, 79, 97, 228, 485
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	2 cut(s)	313, 584
HpyCH4III	ACNGT	2 cut(s)	148, 253
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	4 cut(s)	218, 344, 562, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 341
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	2 cut(s)	104, 157
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	340, 452
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	2 cut(s)	121, 226
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	3 cut(s)	84, 540, 686
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	270, 449
MluCI	AATT	3 cut(s)	403, 473, 566
MmeI	TCCRAC	2 cut(s)	22, 600
MnlI	CCTC	6 cut(s)	5, 214, 286, 316, 488, 623
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	6 cut(s)	183, 378, 393, 402, 407, 461
MslI	CAYNNNNRTG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	460
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	293, 341
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	104, 157
NlaIV	GGNNCC	2 cut(s)	336, 448
NmuCI	GTSAC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	106, 500
PkrI	GCNGC	2 cut(s)	190, 694
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	336, 448
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	6 cut(s)	183, 378, 393, 402, 407, 461
SatI	GCNGC	2 cut(s)	189, 693
Sau3AI	GATC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	270, 449
SetI	ASST	8 cut(s)	16, 174, 289, 327, 332, 558, 589, 681
SfaNI	GCATC	2 cut(s)	121, 226
SfcI	CTRYAG	2 cut(s)	240, 481
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	403, 473, 566
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	100, 552
TaaI	ACNGT	2 cut(s)	148, 253
TaiI	ACGT	1 cut(s)	681
TasI	AATT	3 cut(s)	403, 473, 566
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	106, 500
Tru1I	TTAA	6 cut(s)	183, 378, 393, 402, 407, 461
Tru9I	TTAA	6 cut(s)	183, 378, 393, 402, 407, 461
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	131, 332
Vha464I	CTTAAG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	32, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.