Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0017915

Physical Location & Seq

Genomic Coordinates Forward (+)

6308907 .. 6310266

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGATATAGTTATGCTAAACAGTCCAATCCTAGGCACCAGAAAAAACCCTATATAATGGAAAAAGTATGGAGATTTAGGTATTGTTTTCTGCACAGAGGGCCAACCCAAATCATCAAAGCACTGCACTTGTTCCCAATCTGCCACTTTTCATCACCAAAGGTGTGTCCAACTAACAAAACCGAGGAAAATTTCCTGAAAATTTTTGACCGAGAAAGAAGTGAACTCATTCTCAATCATCAAGTTGTGCATTCCACTTTATTGAAATGCTCTTCTGATTTGATTGCACTGAGATTTTTCTTGTGGTGTGCCGGACAACGCAATTATTTTCACGACAAGATTGTGATTGATCACATGGTTGGTGTCATCAAGCGCACGATGGAACAATACAGAACAGTTCAATTGATAATTAGGGAACTAGAGAGCATGGGGTGTGTTGTAAAATCTCAAACGTTCTTACTCTTGTTGAGGATTTATTGGCGTGGCGAAATGTATACAATGGTCTTTGAGGCTTTTGAGCTAATGGGTACTTATGGTTTTATTCCAAACACATTCGCTCGTAACATAATCATTGATGCATTGTTCAAAATTGGGCATGGGGATTTAGCTATTAAGTTTGTGAAAGAGACCCGAAGGCCAAATTTTTTGACTTATAACATTGCGCTGTGTAATTTATGTAATCTCAAGGATTTATGTCACATTCGAGATGTGTTGAGAATGATGTTGCGGCAGGGTTATCACCCAAAAGTTGAGACTTTTGAGATGATTTTGAGCTGTTTTTGCAAAATGGATAATATAGTGGAGGCGCATCAAGTGTTGGGCCTACTGATTACTTTGGGCAACGTTGTGTCTGTAAATGTTTGGAGCATGTTGATGAATGGGTTTTGTCGATTGCAGAGACCTGATGCGGCTGGTCAGTTATTGGAGAAGATGGTTGAGACTGGTTCTTCTCCTAGTATTGTAACGTACACGACTTTAATCAGAGGATTTTTAAAATCTAATATGGTTAGTGAAGCATTCAATATTCTAAATATTATTGAATCTAAAGGATATGCCCCTGACCTCGTTCTTTGTAATGTGTTAATAGACTCCTTTGCCAAGGCTGGGAGGTGTGATGATGCCATCGATGTTTTTGTTAGCATGATCGATCACGAAACTTGGCTCCTGATTCTTGTACTGTCTCTTCATTGTTATCCACCATATGTTTGTCTAGGAGGTTTCATCTGTTACCCAAGTTGGTTCGTGGACTTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

419

Amino Acids

48.37

Weight (kDa)

8.66

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRP-S27	PF10037	283 - 396	8.7e-06	Mitochondrial 28S ribosomal protein S27
PPR_2	PF13041	285 - 332	3.9e-11	PPR repeat family
PPR_3	PF13812	307 - 365	5.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	318 - 355	9.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16830
malus_domestica	MD09G1165000.v1.1 MD17G1163000.v1.1 MD17G1163100.v1.1 MD17G1163200.v1.1
prunus_persica	Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1
pyrus_communis	pycom09g08220 pycom09g08230 pycom17g15580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	2 cut(s)	727, 908
AclI	AACGTT	2 cut(s)	452, 843
AcsI	RAATTY	3 cut(s)	190, 201, 640
AfaI	GTAC	3 cut(s)	529, 968, 1176
AfiI	CCNNNNNNNGG	2 cut(s)	33, 1104
AgsI	TTSAA	5 cut(s)	265, 401, 586, 1021, 1040
AluBI	AGCT	3 cut(s)	520, 608, 774
AluI	AGCT	3 cut(s)	520, 608, 774
Alw26I	GTCTC	5 cut(s)	620, 746, 892, 932, 1185
AoxI	GGCC	3 cut(s)	101, 635, 820
ApoI	RAATTY	3 cut(s)	190, 201, 640
Asp700I	GAANNNNTTC	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	375, 664, 808
AspS9I	GGNCC	2 cut(s)	101, 820
AsuHPI	GGTGA	2 cut(s)	147, 731
AvrII	CCTAGG	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	1167, 1199
BccI	CCATC	3 cut(s)	373, 925, 1130
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	5 cut(s)	620, 746, 892, 932, 1185
BfaI	CTAG	4 cut(s)	33, 419, 954, 1211
BisI	GCNGC	2 cut(s)	728, 909
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	2 cut(s)	729, 910
BmgT120I	GGNCC	2 cut(s)	101, 820
BmiI	GGNNCC	2 cut(s)	38, 1163
BmsI	GCATC	4 cut(s)	565, 817, 895, 1108
BpuEI	CTTGAG	1 cut(s)	668
Bsa29I	ATCGAT	2 cut(s)	1125, 1146
BsaI	GGTCTC	2 cut(s)	620, 892
BsaJI	CCNNGG	3 cut(s)	32, 183, 1098
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 1104
Bse1I	ACTGG	1 cut(s)	946
Bse3DI	GCAATG	1 cut(s)	657
BseCI	ATCGAT	2 cut(s)	1125, 1146
BseDI	CCNNGG	3 cut(s)	32, 183, 1098
BseLI	CCNNNNNNNGG	2 cut(s)	33, 1104
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	946
BseYI	CCCAGC	1 cut(s)	1103
BsgI	GTGCAG	2 cut(s)	77, 110
BshFI	GGCC	3 cut(s)	103, 637, 822
BshNI	GGYRCC	1 cut(s)	36
BshVI	ATCGAT	2 cut(s)	1125, 1146
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	2 cut(s)	33, 1104
BsmAI	GTCTC	5 cut(s)	620, 746, 892, 932, 1185
BsmI	GAATGC	2 cut(s)	250, 1016
BsnI	GGCC	3 cut(s)	103, 637, 822
Bso31I	GGTCTC	2 cut(s)	620, 892
Bsp143I	GATC	3 cut(s)	349, 1143, 1147
BspACI	CCGC	2 cut(s)	727, 908
BspANI	GGCC	3 cut(s)	103, 637, 822
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	2 cut(s)	1125, 1146
BspLI	GGNNCC	2 cut(s)	38, 1163
BspQI	GCTCTTC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	36
BspTNI	GGTCTC	2 cut(s)	620, 892
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	946
BssECI	CCNNGG	3 cut(s)	32, 183, 1098
BssMI	GATC	3 cut(s)	349, 1143, 1147
BssNAI	GTATAC	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	32, 1098
Bst1107I	GTATAC	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	24, 397, 1179
Bst6I	CTCTTC	2 cut(s)	277, 1188
BstDEI	CTNAG	1 cut(s)	290
BstHHI	GCGC	3 cut(s)	375, 664, 808
BstKTI	GATC	3 cut(s)	352, 1146, 1150
BstMAI	GTCTC	5 cut(s)	620, 746, 892, 932, 1185
BstMBI	GATC	3 cut(s)	349, 1143, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 780
BstNSI	RCATGY	1 cut(s)	871
BstZ17I	GTATAC	1 cut(s)	495
Bsu15I	ATCGAT	2 cut(s)	1125, 1146
BsuRI	GGCC	3 cut(s)	103, 637, 822
BsuTUI	ATCGAT	2 cut(s)	1125, 1146
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	122, 287
CfoI	GCGC	3 cut(s)	375, 664, 808
Cfr13I	GGNCC	2 cut(s)	101, 820
ClaI	ATCGAT	2 cut(s)	1125, 1146
Csp6I	GTAC	3 cut(s)	528, 967, 1175
CviAII	CATG	5 cut(s)	355, 427, 596, 868, 1141
CviQI	GTAC	3 cut(s)	528, 967, 1175
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	3 cut(s)	351, 1145, 1149
DpnII	GATC	3 cut(s)	349, 1143, 1147
DraI	TTTAAA	1 cut(s)	993
Eam1104I	CTCTTC	2 cut(s)	277, 1188
EarI	CTCTTC	2 cut(s)	277, 1188
Eco130I	CCWWGG	2 cut(s)	32, 1098
Eco31I	GGTCTC	2 cut(s)	620, 892
EcoT14I	CCWWGG	2 cut(s)	32, 1098
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	32, 1098
FaeI	CATG	5 cut(s)	358, 430, 599, 871, 1144
FatI	CATG	5 cut(s)	354, 426, 595, 867, 1140
FauNDI	CATATG	1 cut(s)	1201
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	2 cut(s)	728, 909
Fsp4HI	GCNGC	2 cut(s)	728, 909
FspBI	CTAG	4 cut(s)	33, 419, 954, 1211
GlaI	GCGC	3 cut(s)	374, 663, 807
GluI	GCNGC	2 cut(s)	728, 909
GsaI	CCCAGC	1 cut(s)	1107
HaeIII	GGCC	3 cut(s)	103, 637, 822
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	3 cut(s)	375, 664, 808
Hin1II	CATG	5 cut(s)	358, 430, 599, 871, 1144
Hin6I	GCGC	3 cut(s)	373, 662, 806
HinP1I	GCGC	3 cut(s)	373, 662, 806
HinfI	GANTC	3 cut(s)	1040, 1088, 1168
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	2 cut(s)	147, 731
Hpy166II	GTNNAC	4 cut(s)	224, 495, 969, 1246
Hpy188I	TCNGA	2 cut(s)	277, 983
Hpy188III	TCNNGA	5 cut(s)	196, 332, 704, 1151, 1165
Hpy8I	GTNNAC	4 cut(s)	224, 495, 969, 1246
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	3 cut(s)	24, 397, 1179
HpyCH4IV	ACGT	3 cut(s)	452, 843, 965
HpyCH4V	TGCA	7 cut(s)	94, 127, 250, 287, 578, 783, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 780
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	3 cut(s)	452, 843, 965
Hsp92II	CATG	5 cut(s)	358, 430, 599, 871, 1144
HspAI	GCGC	3 cut(s)	373, 662, 806
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	349, 1143, 1147
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	864, 1167
LweI	GCATC	4 cut(s)	565, 817, 895, 1108
MaeI	CTAG	4 cut(s)	33, 419, 954, 1211
MaeII	ACGT	3 cut(s)	452, 843, 965
MaeIII	GTNAC	4 cut(s)	560, 695, 961, 1226
MalI	GATC	3 cut(s)	351, 1145, 1149
MboI	GATC	3 cut(s)	349, 1143, 1147
MboII	GAAGA	4 cut(s)	264, 939, 940, 1175
MfeI	CAATTG	1 cut(s)	401
MluCI	AATT	8 cut(s)	190, 201, 322, 401, 408, 588, 640, 670
MlyI	GAGTC	1 cut(s)	1082
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	9 cut(s)	92, 178, 462, 502, 796, 977, 1073, 1101, 1208
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	4 cut(s)	612, 977, 992, 1082
MslI	CAYNNNNRTG	1 cut(s)	872
MspI	CCGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	2 cut(s)	250, 1016
MwoI	GCNNNNNNNGC	2 cut(s)	100, 780
NdeI	CATATG	1 cut(s)	1201
NdeII	GATC	3 cut(s)	349, 1143, 1147
NlaIII	CATG	5 cut(s)	358, 430, 599, 871, 1144
NlaIV	GGNNCC	2 cut(s)	38, 1163
NmuCI	GTSAC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	871
PciSI	GCTCTTC	1 cut(s)	277
PctI	GAATGC	2 cut(s)	250, 1016
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	1040, 1168
PkrI	GCNGC	2 cut(s)	729, 910
PleI	GAGTC	1 cut(s)	1082
PpsI	GAGTC	1 cut(s)	1082
PsiI	TTATAA	1 cut(s)	654
Psp1406I	AACGTT	2 cut(s)	452, 843
PspFI	CCCAGC	1 cut(s)	1103
PspN4I	GGNNCC	2 cut(s)	38, 1163
PspPI	GGNCC	2 cut(s)	101, 820
RsaI	GTAC	3 cut(s)	529, 968, 1176
RsaNI	GTAC	3 cut(s)	528, 967, 1175
RseI	CAYNNNNRTG	1 cut(s)	872
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	4 cut(s)	612, 977, 992, 1082
SatI	GCNGC	2 cut(s)	728, 909
Sau3AI	GATC	3 cut(s)	349, 1143, 1147
Sau96I	GGNCC	2 cut(s)	101, 820
SchI	GAGTC	1 cut(s)	1082
SfaNI	GCATC	4 cut(s)	565, 817, 895, 1108
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	8 cut(s)	190, 201, 322, 401, 408, 588, 640, 670
SsiI	CCGC	2 cut(s)	727, 908
SspI	AATATT	2 cut(s)	1024, 1033
SspMI	CTAG	4 cut(s)	33, 419, 954, 1211
StyI	CCWWGG	2 cut(s)	32, 1098
TaaI	ACNGT	3 cut(s)	24, 397, 1179
TaiI	ACGT	3 cut(s)	455, 846, 968
TaqI	TCGA	4 cut(s)	703, 889, 1125, 1146
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	8 cut(s)	190, 201, 322, 401, 408, 588, 640, 670
TatI	WGTACW	1 cut(s)	1174
TauI	GCSGC	2 cut(s)	730, 911
TfiI	GAWTC	2 cut(s)	1040, 1168
Tru1I	TTAA	4 cut(s)	612, 977, 992, 1082
Tru9I	TTAA	4 cut(s)	612, 977, 992, 1082
TscAI	CASTG	2 cut(s)	129, 294
TseFI	GTSAC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	4 cut(s)	141, 890, 1175, 1210
TspRI	CASTG	2 cut(s)	129, 294
XapI	RAATTY	3 cut(s)	190, 201, 640
XceI	RCATGY	1 cut(s)	871
XmaJI	CCTAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	4 cut(s)	33, 419, 954, 1211
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.