Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0017915

Physical Location & Seq

Genomic Coordinates Forward (+)

1664999 .. 1670940

Gene Structure 5942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G022400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGAAATGCTTGGTTTGCAGGAAAAATCAAACTTTGATGGAAAAAGTATGGAGATTTAGGTTGTGTTTTCTACACAGAGGGCCAAACCAAATCATCAGAGCACTGCGCATGTTGCCAATCTGCCACTTTTCATCTCCAAAGGTATGCCCAACTAACAAAACCAAGAAAATTTTCCGGGAAAATCTTGACCCAGAAAGAAGTAAATGCACTCTCACTCATCAGAATGTGCATTCCACTTTATTGAACTGCCCTTCGGATTTGATTGCACTGAGATTCTTTTTGTGGTGTGCTCAACAACCTAATTTTTTTCACAATAGGATTGTGTTTGACCACATGGTTGGTGTGATCAAGCGCATGATGGAACGGTACAAAACAGTTAAATCGGTTGTTAGGGAATTAGCGAGTGTAGGGTGTGTTATAAAATCTCAGACATTTTTGCTCTTGCTGAGGATTTATTGGCGTGGCAGAATGTATGAGATGGTCTTTGAGGCAATTGAGCAAATGGGTGCTTATGGTTTTACTCCGAACACGTTTGTGCGTAATGTAATCATTGATGTATCGTTCAAAATTGGGCGTGGTGATTTAGCTATTAAGTCTCTGAAAGAGACCCAAGTGCCAAATTTTGTGACTTTTAATATTATGCTGTGTAATTTATGCAAGTTCAATGATTTGTTCCATATTGGAGATGTATTGAGAATGATGTTGCGGTGGGGGTATCACCCAAAAGTTGAGACATTTGAGATGCTTTTGAACTGTTTTTGCAAAATGGGTAATATAGTGGAGGCGCATCAAGTTTTGGGTCTAATGATTACTTTGGGCGTCTCTATGTCTGTAAATGTTTGGAGTATGTTAATCCATGGGTTTTGTCGATTGCAGAGACTTGATGTTGCTGGTAAATTATTGGACAAGATGGTTGAGACTGGTTCTTCTCCTAATATTGTAACATACACGACTTTAATCAGAGGATTTTTAAAGTCTCACATGGTTCACGATGCATTCAACGTTTTAAGTATTATGGAATCTAAAGGAGATGCCCCTGATCTGGTTCTTTGTAATGTGTTAATAGACTCCCTCACCAAGGTTGGGAGGTACAATGATGCTATTGATGTTTTTGTTGGCATGCGATCACGAAAATTGTCTCCCGATTCGTATACGTTCTGTTCATTGTTATCCGCCATATGTTCTTCCAGGAGGTTCTCTCTGTTCCCCAAGTTGGTTTGCGGACTTGAAATAGAAGCTGACTTATTAGTATGCAACTCACTTCTCAGTTATTTCTGTAAATCGGGGTTTCCAGCTCTGGCTGTGAAGTTTTATAAGGTTATGCTCGATAGAGGTTTTACAGCAGATAAGTATACTTTTGTTGGATTATTAAGTGGACTATGTAAAGCTAGAAGAGTTGACCAAGCAGTTGATGTGTACCATGGGATTGTCATGAATTACCCTGGTCAGGATGCTCATATTCATACTGTTCTTATAGATGGGCTTATAAAGGTTCGTAAATTTGATAGAGCCATTAGCATATTTAAGAAAGTAGTTGCAGAGAGGTATGCACTTGATGTTGTAGCTTATGCAGTTACCATTCGTGGACTTTTCATGGGTGGTAGAACTGAAGAGGCTTGTTCACTTTATCGCCAAATGAAGGAGGTTGGTTTGACTCCTAATGAATATACTTACAATGTAATGGTCTCTGGCTTTGTTAAAGAAAGAGATCTTAATATGGTTAATTTAATGCTACAAGAGATGATTGAAGCGAAAGTACGACTGAGCTACAATACTGTCCTGAGATTATCAAAATTTCTTTGTAGATCATATCATTTGATTTCAGTTATTGACCTATGGATTGAGATGAGAAATTTGGGTTTGATATCTGGTGAGGTAATGCATGAATTATTTCCCGATGAAGTTGTTGAAGGTGTGAAAGGAGATGATGGTCACATTACATTTTCGGATGCTTATTCAGAAACTGATCTACATGTGGAGACATCTGGCTCTGAAGACTTCTGTGATGTGGCTGCTTCGATAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

676

Amino Acids

77.0

Weight (kDa)

8.85

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16830
malus_domestica	MD09G1165000.v1.1 MD17G1163000.v1.1 MD17G1163100.v1.1 MD17G1163200.v1.1
prunus_persica	Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1 Prupe.3G022400_v2.0.a1
pyrus_communis	pycom09g08220 pycom09g08230 pycom17g15580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	419, 1314, 1487
Acc16I	TGCGCA	1 cut(s)	107
AccI	GTMKAC	2 cut(s)	1151, 1352
AciI	CCGC	3 cut(s)	706, 1173, 1221
AclI	AACGTT	1 cut(s)	1002
AcsI	RAATTY	5 cut(s)	168, 619, 1499, 1793, 1852
AcuI	CTGAAG	2 cut(s)	1629, 2013
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	4 cut(s)	368, 1091, 1418, 1758
AfiI	CCNNNNNNNGG	6 cut(s)	1042, 1078, 1083, 1213, 1447, 1639
AflIII	ACRYGT	2 cut(s)	528, 1972
AgsI	TTSAA	8 cut(s)	244, 565, 664, 751, 1000, 1229, 1748, 1910
AjnI	CCWGG	2 cut(s)	1187, 1441
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	6 cut(s)	587, 1238, 1295, 1388, 1565, 1767
AluI	AGCT	6 cut(s)	587, 1238, 1295, 1388, 1565, 1767
Alw21I	GWGCWC	2 cut(s)	103, 292
AlwNI	CAGNNNCTG	1 cut(s)	1964
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	2012
ApoI	RAATTY	5 cut(s)	168, 619, 1499, 1793, 1852
Asp700I	GAANNNNTTC	2 cut(s)	170, 1890
AspLEI	GCGC	3 cut(s)	108, 354, 787
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	4 cut(s)	590, 710, 1066, 1883
BarI	GAAGNNNNNNTAC	2 cut(s)	1740, 1772
BbsI	GAAGAC	1 cut(s)	2001
Bbv12I	GWGCWC	2 cut(s)	103, 292
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	1999
BccI	CCATC	6 cut(s)	31, 352, 472, 904, 1472, 1922
BciT130I	CCWGG	2 cut(s)	1189, 1443
BclI	TGATCA	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	1389
BglII	AGATCT	1 cut(s)	1708
BisI	GCNGC	1 cut(s)	2013
BlsI	GCNGC	1 cut(s)	2014
Bme1390I	CCNGG	3 cut(s)	176, 1189, 1443
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	176, 1189, 1443
BmsI	GCATC	7 cut(s)	732, 796, 982, 1021, 1087, 1441, 1939
BpiI	GAAGAC	1 cut(s)	2001
BplI	GAGNNNNNCTC	2 cut(s)	1183, 1215
Bpu10I	CCTNAGC	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	819
BsaI	GGTCTC	2 cut(s)	599, 1690
BsaJI	CCNNGG	4 cut(s)	856, 1077, 1420, 1441
Bsc4I	CCNNNNNNNGG	6 cut(s)	1042, 1078, 1083, 1213, 1447, 1639
Bse1I	ACTGG	1 cut(s)	925
BseBI	CCWGG	2 cut(s)	1189, 1443
BseDI	CCNNGG	4 cut(s)	856, 1077, 1420, 1441
BseGI	GGATG	2 cut(s)	1456, 1954
BseLI	CCNNNNNNNGG	6 cut(s)	1042, 1078, 1083, 1213, 1447, 1639
BseMII	CTCAG	6 cut(s)	260, 437, 440, 1279, 1754, 1772
BseNI	ACTGG	1 cut(s)	925
BseXI	GCAGC	1 cut(s)	1999
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	103, 292
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	6 cut(s)	1042, 1078, 1083, 1213, 1447, 1639
BsmBI	CGTCTC	1 cut(s)	826
BsmI	GAATGC	2 cut(s)	229, 995
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	2 cut(s)	599, 1690
Bsp1286I	GDGCHC	2 cut(s)	103, 292
Bsp143I	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
Bsp19I	CCATGG	2 cut(s)	856, 1420
BspACI	CCGC	3 cut(s)	706, 1173, 1221
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	6 cut(s)	261, 438, 439, 1278, 1755, 1773
BspHI	TCATGA	1 cut(s)	1431
BspTNI	GGTCTC	2 cut(s)	599, 1690
BsrI	ACTGG	1 cut(s)	925
BssECI	CCNNGG	4 cut(s)	856, 1077, 1420, 1441
BssMI	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
BssNAI	GTATAC	2 cut(s)	1152, 1353
BssNI	GRCGYC	1 cut(s)	819
BssT1I	CCWWGG	3 cut(s)	856, 1077, 1420
Bst1107I	GTATAC	2 cut(s)	1152, 1353
Bst2UI	CCWGG	2 cut(s)	1189, 1443
Bst4CI	ACNGT	5 cut(s)	366, 376, 755, 1468, 1777
Bst6I	CTCTTC	2 cut(s)	1387, 1605
BstACI	GRCGYC	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	1121
BstDEI	CTNAG	6 cut(s)	269, 426, 446, 1265, 1763, 1781
BstDSI	CCRYGG	2 cut(s)	856, 1420
BstENI	CCTNNNNNAGG	1 cut(s)	1076
BstF5I	GGATG	2 cut(s)	1456, 1954
BstHHI	GCGC	3 cut(s)	108, 354, 787
BstKTI	GATC	6 cut(s)	348, 1042, 1127, 1711, 1808, 1969
BstMBI	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 112
BstNI	CCWGG	2 cut(s)	1189, 1443
BstNSI	RCATGY	3 cut(s)	112, 1123, 1976
BstSCI	CCNGG	3 cut(s)	174, 1187, 1441
BstV1I	GCAGC	1 cut(s)	1999
BstV2I	GAAGAC	1 cut(s)	2001
BstX2I	RGATCY	1 cut(s)	1708
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	1708
BstZ17I	GTATAC	2 cut(s)	1152, 1353
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	2 cut(s)	856, 1420
BtsCI	GGATG	2 cut(s)	1456, 1954
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 266
Cac8I	GCNNGC	1 cut(s)	1121
CaiI	CAGNNNCTG	1 cut(s)	1964
CciI	TCATGA	1 cut(s)	1431
CfoI	GCGC	3 cut(s)	108, 354, 787
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	808
Csp6I	GTAC	4 cut(s)	367, 1090, 1417, 1757
CviQI	GTAC	4 cut(s)	367, 1090, 1417, 1757
DdeI	CTNAG	6 cut(s)	269, 426, 446, 1265, 1763, 1781
DpnI	GATC	6 cut(s)	347, 1041, 1126, 1710, 1807, 1968
DpnII	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
DraI	TTTAAA	1 cut(s)	972
Eam1104I	CTCTTC	2 cut(s)	1387, 1605
EarI	CTCTTC	2 cut(s)	1387, 1605
EciI	GGCGGA	1 cut(s)	1162
Eco130I	CCWWGG	3 cut(s)	856, 1077, 1420
Eco31I	GGTCTC	2 cut(s)	599, 1690
Eco32I	GATATC	1 cut(s)	1866
Eco57I	CTGAAG	2 cut(s)	1629, 2013
EcoNI	CCTNNNNNAGG	1 cut(s)	1076
EcoRII	CCWGG	2 cut(s)	1187, 1441
EcoRV	GATATC	1 cut(s)	1866
EcoT14I	CCWWGG	3 cut(s)	856, 1077, 1420
EcoT22I	ATGCAT	2 cut(s)	997, 1884
ErhI	CCWWGG	3 cut(s)	856, 1077, 1420
Esp3I	CGTCTC	1 cut(s)	826
FauNDI	CATATG	1 cut(s)	1178
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	2 cut(s)	1151, 1352
Fnu4HI	GCNGC	1 cut(s)	2013
FokI	GGATG	2 cut(s)	1463, 1961
Fsp4HI	GCNGC	1 cut(s)	2013
FspBI	CTAG	1 cut(s)	1389
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	3 cut(s)	107, 353, 786
GluI	GCNGC	1 cut(s)	2013
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	808
HhaI	GCGC	3 cut(s)	108, 354, 787
Hin1I	GRCGYC	1 cut(s)	819
Hin6I	GCGC	3 cut(s)	106, 352, 785
HinP1I	GCGC	3 cut(s)	106, 352, 785
HincII	GTYRAC	1 cut(s)	1399
HindII	GTYRAC	1 cut(s)	1399
HinfI	GANTC	5 cut(s)	273, 1019, 1067, 1145, 1654
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	4 cut(s)	590, 710, 1066, 1883
Hpy166II	GTNNAC	8 cut(s)	988, 1152, 1353, 1376, 1399, 1417, 1586, 1622
Hpy188III	TCNNGA	8 cut(s)	185, 989, 1128, 1142, 1432, 1448, 1780, 1895
Hpy8I	GTNNAC	8 cut(s)	988, 1152, 1353, 1376, 1399, 1417, 1586, 1622
HpyAV	CCTTC	3 cut(s)	261, 1633, 1904
HpyCH4III	ACNGT	5 cut(s)	366, 376, 755, 1468, 1777
HpyCH4IV	ACGT	3 cut(s)	530, 1002, 1154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 112
HpyF3I	CTNAG	6 cut(s)	269, 426, 446, 1265, 1763, 1781
HpySE526I	ACGT	3 cut(s)	530, 1002, 1154
Hsp92I	GRCGYC	1 cut(s)	819
HspAI	GCGC	3 cut(s)	106, 352, 785
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
Lsp1109I	GCAGC	1 cut(s)	1999
LweI	GCATC	7 cut(s)	732, 796, 982, 1021, 1087, 1441, 1939
MaeI	CTAG	1 cut(s)	1389
MaeII	ACGT	3 cut(s)	530, 1002, 1154
MaeIII	GTNAC	4 cut(s)	625, 940, 1573, 1931
MalI	GATC	6 cut(s)	347, 1041, 1126, 1710, 1807, 1968
MboI	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
MboII	GAAGA	5 cut(s)	918, 1176, 1404, 1622, 2006
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	1708
MhlI	GDGCHC	2 cut(s)	103, 292
MlyI	GAGTC	2 cut(s)	1061, 1648
MmeI	TCCRAC	1 cut(s)	1342
Mph1103I	ATGCAT	2 cut(s)	997, 1884
MroXI	GAANNNNTTC	2 cut(s)	170, 1890
MslI	CAYNNNNRTG	2 cut(s)	222, 533
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	3 cut(s)	176, 1189, 1443
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	2 cut(s)	229, 995
MvaI	CCWGG	2 cut(s)	1189, 1443
MwoI	GCNNNNNNNGC	2 cut(s)	15, 112
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	2 cut(s)	856, 1420
NdeI	CATATG	1 cut(s)	1178
NdeII	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
NmuCI	GTSAC	2 cut(s)	625, 1931
NsbI	TGCGCA	1 cut(s)	107
NsiI	ATGCAT	2 cut(s)	997, 1884
NspI	RCATGY	3 cut(s)	112, 1123, 1976
OliI	CACNNNNGTG	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	1123
PagI	TCATGA	1 cut(s)	1431
PciI	ACATGT	1 cut(s)	1972
PctI	GAATGC	2 cut(s)	229, 995
PdmI	GAANNNNTTC	2 cut(s)	170, 1890
PfeI	GAWTC	3 cut(s)	273, 1019, 1145
PfoI	TCCNGGA	2 cut(s)	174, 1187
PkrI	GCNGC	1 cut(s)	2014
PleI	GAGTC	2 cut(s)	1061, 1648
PpsI	GAGTC	2 cut(s)	1061, 1648
PscI	ACATGT	1 cut(s)	1972
PsiI	TTATAA	3 cut(s)	419, 1314, 1487
Psp1406I	AACGTT	1 cut(s)	1002
Psp6I	CCWGG	2 cut(s)	1187, 1441
PspGI	CCWGG	2 cut(s)	1187, 1441
PspPI	GGNCC	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	1964
PsuI	RGATCY	1 cut(s)	1708
RsaI	GTAC	4 cut(s)	368, 1091, 1418, 1758
RsaNI	GTAC	4 cut(s)	367, 1090, 1417, 1757
RseI	CAYNNNNRTG	2 cut(s)	222, 533
SatI	GCNGC	1 cut(s)	2013
Sau3AI	GATC	6 cut(s)	345, 1039, 1124, 1708, 1805, 1966
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	1061, 1648
ScrFI	CCNGG	3 cut(s)	176, 1189, 1443
SduI	GDGCHC	2 cut(s)	103, 292
SfaNI	GCATC	7 cut(s)	732, 796, 982, 1021, 1087, 1441, 1939
SmiMI	CAYNNNNRTG	2 cut(s)	222, 533
SphI	GCATGC	1 cut(s)	1123
SsiI	CCGC	3 cut(s)	706, 1173, 1221
SspI	AATATT	2 cut(s)	637, 937
SspMI	CTAG	1 cut(s)	1389
StyD4I	CCNGG	3 cut(s)	174, 1187, 1441
StyI	CCWWGG	3 cut(s)	856, 1077, 1420
TaaI	ACNGT	5 cut(s)	366, 376, 755, 1468, 1777
TaiI	ACGT	3 cut(s)	533, 1005, 1157
TaqI	TCGA	3 cut(s)	868, 1326, 2018
TfiI	GAWTC	3 cut(s)	273, 1019, 1145
TscAI	CASTG	2 cut(s)	108, 273
TseFI	GTSAC	2 cut(s)	625, 1931
TseI	GCWGC	1 cut(s)	2012
Tsp45I	GTSAC	2 cut(s)	625, 1931
TspRI	CASTG	2 cut(s)	108, 273
XagI	CCTNNNNNAGG	1 cut(s)	1076
XapI	RAATTY	5 cut(s)	168, 619, 1499, 1793, 1852
XceI	RCATGY	3 cut(s)	112, 1123, 1976
XmiI	GTMKAC	2 cut(s)	1151, 1352
XmnI	GAANNNNTTC	2 cut(s)	170, 1890
XspI	CTAG	1 cut(s)	1389
Zsp2I	ATGCAT	2 cut(s)	997, 1884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.