Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013037

Physical Location & Seq

Genomic Coordinates Forward (+)

16555370 .. 16555633

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1166500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCCATTTCCAACCTCTTCCCCTTCCTTTGCCTCCTCTGTTTTCTTTTTCCTCCGGTGCTCTCCATCCTGCCCGACCTATCCGACCGTCCAAAAACCTTCATCGTCCACGTGTCTAAATCGGAGAAGCCATCCCTCTTCTCTTCCCACCGCAGCTGGTACATTTCCATCATCCAATCCCTCCCGTCCCCCCACCCCACCAAACTCCTATACACCTACGACCCTGCCATCAACGGCTTTTTCGCCAACCTCACATCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009505 GO:0009653 GO:0010016 GO:0010150 GO:0010223 GO:0010346 GO:0016020 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031090 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0070011 GO:0071704 GO:0071944 GO:0090693 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

88

Amino Acids

9.82

Weight (kDa)

8.71

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	33 - 87	1.6e-08	Peptidase inhibitor I9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14067
fragaria_vesca	FvH4_6g35010
malus_domestica	MD09G1180500.v1.1 MD17G1166500.v1.1
prunus_persica	Prupe.3G039000_v2.0.a1
pyrus_communis	pycom09g09790
rosa_chinensis	RchiOBHm_Chr2g0146061
rosa_laevigata	RLG00000020182
rosa_multiflora	Rmu_sc0010454.1_g000002 Rmu_sc0014682.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434860 Rroxscaffold_2G00100300
rosa_rugosa	Rorug02G0393600
rosa_samantha	Rh2AG449000 Rh2BG461400 Rh2CG436000 Rh2DG470600
rosa_wichuraiana	Rw2G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	111
AluBI	AGCT	1 cut(s)	156
AluI	AGCT	1 cut(s)	156
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	4 cut(s)	74, 139, 176, 236
BceAI	ACGGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	55
BseGI	GGATG	4 cut(s)	66, 131, 171, 254
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	3 cut(s)	23, 143, 148
BstBAI	YACGTR	1 cut(s)	112
BstF5I	GGATG	4 cut(s)	66, 131, 171, 254
BstMCI	CGRYCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	4 cut(s)	66, 131, 171, 254
Csp6I	GTAC	1 cut(s)	160
CviJI	RGCY	4 cut(s)	5, 130, 156, 237
CviKI_1	RGCY	4 cut(s)	5, 130, 156, 237
CviQI	GTAC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	23, 143, 148
EarI	CTCTTC	3 cut(s)	23, 143, 148
Eco72I	CACGTG	1 cut(s)	112
FaiI	YATR	1 cut(s)	211
FaqI	GGGAC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	4 cut(s)	53, 118, 158, 241
Fsp4HI	GCNGC	1 cut(s)	154
GluI	GCNGC	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	56
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	85, 124
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	34, 109
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	111
LpnPI	CCDG	4 cut(s)	69, 83, 142, 237
Lsp1109I	GCAGC	1 cut(s)	165
MaeII	ACGT	1 cut(s)	111
MboII	GAAGA	3 cut(s)	10, 130, 135
MhlI	GDGCHC	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	36, 108
MnlI	CCTC	7 cut(s)	26, 44, 47, 63, 146, 191, 260
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	262
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	155
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	112
PspCI	CACGTG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	18, 81, 101, 114, 158, 218, 252
SgeI	CNNG	8 cut(s)	68, 82, 86, 122, 124, 169, 196, 236
SsiI	CCGC	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.