Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016066

Physical Location & Seq

Genomic Coordinates Reverse (-)

25356406 .. 25359144

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATACTGGCAGTGTTGTTCGCCAACTCGGAAGGCAACATCCTAGTTGAACGTTTCAATGGAGTTCCTGCTGAGGAAAGGCTGCATTGGCGATCTTTCCTGGTCAAACTTGGGGCAGATAATCTTAGGGGCGTGAAGAATGAAGAGCTCCTTGTTGCTTGCCACAAGTCAGTTTACATTGTTTACACTGTGCTTGGGGATGTCAGCATCTATGTCGTGGGCAAAGATGAGTATGATGAACTAGCCTTGTCGGAGGTGATCTTTGTTATAACATCAGCTGTGAAGGATGTATGCGGAAAGCCGCCAACTGAGCGCCTTTTCCTGGATAAGTACGGAAGAATTTGCTTGTGTCTGGATGAAATTGTTTGGAAGGGATTGCTGGAAAATACAGAAAAGGATAGAATCAAGAGATTGATAAGGTTAAAGCCTCCAACTGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

148

Amino Acids

16.73

Weight (kDa)

5.75

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15370
fragaria_vesca	FvH4_6g29940
malus_domestica	MD17G1208900.v1.1
prunus_persica	Prupe.3G084300_v2.0.a1 Prupe.3G084300_v2.0.a1
pyrus_communis	pycom17g21470
rosa_chinensis	RchiOBHm_Chr2g0135941
rosa_multiflora	Rmu_ssc0000343.1_g000014
rosa_roxburghii	Rroxscaffold_2G00108760
rosa_rugosa	Rorug02G0326900
rosa_samantha	Rh2AG378800 Rh2BG385200 Rh2CG364300 Rh2DG401500
rosa_wichuraiana	Rw2G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AciI	CCGC	2 cut(s)	294, 302
AclI	AACGTT	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	339
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	50, 58
AjnI	CCWGG	2 cut(s)	99, 321
AluBI	AGCT	2 cut(s)	148, 278
AluI	AGCT	2 cut(s)	148, 278
Alw21I	GWGCWC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	2 cut(s)	101, 323
BfaI	CTAG	2 cut(s)	44, 242
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	2 cut(s)	83, 302
BlsI	GCNGC	2 cut(s)	84, 303
Bme1390I	CCNGG	2 cut(s)	101, 323
BmrFI	CCNGG	2 cut(s)	101, 323
BmsI	GCATC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	101, 323
BseGI	GGATG	4 cut(s)	39, 205, 292, 361
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	63, 300
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	92, 258
BspACI	CCGC	2 cut(s)	294, 302
BspCNI	CTCAG	2 cut(s)	64, 301
BspQI	GCTCTTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	92, 258
Bst2UI	CCWGG	2 cut(s)	101, 323
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	72, 125, 309
BstF5I	GGATG	4 cut(s)	39, 205, 292, 361
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	95, 261
BstMBI	GATC	2 cut(s)	92, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 310
BstNI	CCWGG	2 cut(s)	101, 323
BstSCI	CCNGG	2 cut(s)	99, 321
BstV1I	GCAGC	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	39, 205, 292, 361
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 186
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	331
CviJI	RGCY	6 cut(s)	82, 148, 245, 278, 301, 427
CviKI_1	RGCY	6 cut(s)	82, 148, 245, 278, 301, 427
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	72, 125, 309
DpnI	GATC	2 cut(s)	94, 260
DpnII	GATC	2 cut(s)	92, 258
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	99, 321
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	4 cut(s)	213, 234, 269, 292
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
Fnu4HI	GCNGC	2 cut(s)	83, 302
FokI	GGATG	4 cut(s)	26, 212, 299, 368
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	83, 302
FspBI	CTAG	2 cut(s)	44, 242
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	83, 302
HaeII	RGCGCY	1 cut(s)	316
HhaI	GCGC	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	402
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	175, 184
Hpy188I	TCNGA	3 cut(s)	31, 253, 443
Hpy188III	TCNNGA	2 cut(s)	353, 406
Hpy8I	GTNNAC	2 cut(s)	175, 184
HpyAV	CCTTC	3 cut(s)	26, 277, 364
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 310
HpyF3I	CTNAG	3 cut(s)	72, 125, 309
HpySE526I	ACGT	1 cut(s)	52
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	92, 258
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	7 cut(s)	81, 86, 113, 308, 335, 338, 365
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	44, 242
MaeII	ACGT	1 cut(s)	52
MalI	GATC	2 cut(s)	94, 260
MboI	GATC	2 cut(s)	92, 258
MboII	GAAGA	3 cut(s)	148, 155, 348
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	339, 360
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	3 cut(s)	67, 247, 438
MseI	TTAA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	101, 323
MvaI	CCWGG	2 cut(s)	101, 323
MwoI	GCNNNNNNNGC	2 cut(s)	88, 310
NdeII	GATC	2 cut(s)	92, 258
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	84, 303
PsiI	TTATAA	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	99, 321
PspGI	CCWGG	2 cut(s)	99, 321
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	2 cut(s)	83, 302
Sau3AI	GATC	2 cut(s)	92, 258
ScrFI	CCNGG	2 cut(s)	101, 323
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	5 cut(s)	55, 150, 258, 280, 422
SfaNI	GCATC	1 cut(s)	216
Sse9I	AATT	2 cut(s)	339, 360
SsiI	CCGC	2 cut(s)	294, 302
SspMI	CTAG	2 cut(s)	44, 242
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	99, 321
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	55
TasI	AATT	2 cut(s)	339, 360
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	18, 193
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	156, 252, 372
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	2 cut(s)	18, 193
XapI	RAATTY	1 cut(s)	339
XspI	CTAG	2 cut(s)	44, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.