Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016066

Physical Location & Seq

Genomic Coordinates Reverse (-)

6218002 .. 6221212

Gene Structure 3211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G084300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATACTTGCAGTCTTGTTCGCCAACTCGGAAGGCAACATCCTAGTTGAACGTTTCAATGGAGTTCCTGCTGAGGAACGGCTGCATTGGCGATCTTTCCTAGTCAAACTAGGGGCAGAAAATCTTAGGGGTGTGAAAAATGAAGAGCTCCTTGTTGCTTGCCACAAGTCAGTTTACATTGTTTACACTGTGCTTGGGGATGTCAGCATCTATGTTGTGGGCAAGGATGAGTATGATGAACTAGCCTTGTCAGAGGTGATCTTTGTGATAACATCAGCTGTGAAGGATGTATGTGGGAAACCTCCAACTGAGCGCCTTTTCCTGGATAAGTATGGAAGAATTTGCTTGTGTCTGGATGAAATTGTTTGGAAGGGGTTGCTGGAGAATACGGAAAAAGACAGAATCAAGAGACTAATAAGGTTAAAGCCTCCTACTGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

5.77

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15370
fragaria_vesca	FvH4_6g29940
malus_domestica	MD17G1208900.v1.1
prunus_persica	Prupe.3G084300_v2.0.a1 Prupe.3G084300_v2.0.a1
pyrus_communis	pycom17g21470
rosa_chinensis	RchiOBHm_Chr2g0135941
rosa_multiflora	Rmu_ssc0000343.1_g000014
rosa_roxburghii	Rroxscaffold_2G00108760
rosa_rugosa	Rorug02G0326900
rosa_samantha	Rh2AG378800 Rh2BG385200 Rh2CG364300 Rh2DG401500
rosa_wichuraiana	Rw2G030850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	50, 58
AjnI	CCWGG	1 cut(s)	321
AluBI	AGCT	2 cut(s)	148, 278
AluI	AGCT	2 cut(s)	148, 278
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	4 cut(s)	44, 101, 110, 242
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	323
BseGI	GGATG	5 cut(s)	39, 205, 232, 292, 361
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	3 cut(s)	63, 300, 426
BseXI	GCAGC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	92, 258
BspCNI	CTCAG	3 cut(s)	64, 301, 427
BspQI	GCTCTTC	1 cut(s)	138
BssMI	GATC	2 cut(s)	92, 258
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	4 cut(s)	72, 125, 309, 435
BstF5I	GGATG	5 cut(s)	39, 205, 232, 292, 361
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	95, 261
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	2 cut(s)	92, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	69
BtsCI	GGATG	5 cut(s)	39, 205, 232, 292, 361
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	1 cut(s)	315
CviJI	RGCY	5 cut(s)	82, 148, 245, 278, 427
CviKI_1	RGCY	5 cut(s)	82, 148, 245, 278, 427
DdeI	CTNAG	4 cut(s)	72, 125, 309, 435
DpnI	GATC	2 cut(s)	94, 260
DpnII	GATC	2 cut(s)	92, 258
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	4 cut(s)	213, 234, 292, 333
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	5 cut(s)	26, 212, 239, 299, 368
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	4 cut(s)	44, 101, 110, 242
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	401
HaeII	RGCGCY	1 cut(s)	316
HhaI	GCGC	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	402
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	175, 184
Hpy188I	TCNGA	2 cut(s)	31, 253
Hpy188III	TCNNGA	2 cut(s)	353, 406
Hpy8I	GTNNAC	2 cut(s)	175, 184
HpyAV	CCTTC	3 cut(s)	26, 277, 364
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	11, 85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	4 cut(s)	72, 125, 309, 435
HpySE526I	ACGT	1 cut(s)	52
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	92, 258
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	5 cut(s)	81, 308, 335, 338, 365
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	4 cut(s)	44, 101, 110, 242
MaeII	ACGT	1 cut(s)	52
MalI	GATC	2 cut(s)	94, 260
MboI	GATC	2 cut(s)	92, 258
MboII	GAAGA	2 cut(s)	155, 348
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	339, 360
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	4 cut(s)	67, 247, 312, 438
MseI	TTAA	2 cut(s)	422, 442
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	2 cut(s)	92, 258
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	402
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	84
Psp124BI	GAGCTC	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	422, 442
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	92, 258
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	6 cut(s)	55, 150, 258, 280, 304, 422
SfaNI	GCATC	1 cut(s)	216
Sse9I	AATT	2 cut(s)	339, 360
SspMI	CTAG	4 cut(s)	44, 101, 110, 242
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	55
TasI	AATT	2 cut(s)	339, 360
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	2 cut(s)	422, 442
Tru9I	TTAA	2 cut(s)	422, 442
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	156, 252, 372
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	339
XspI	CTAG	4 cut(s)	44, 101, 110, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.