pycom17g21470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016066
Physical Location & Seq
Reverse (-)
19816311 .. 19818530
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21470.4

Sequence Viewer

Length: 444 bp
ATGATACTGGCAGTGTTGTTCGCCAACTCGGAAGGCAACATCCTAGTTGAACGTTTCAACGGAGTTCCTGCTGAGGAAAGGCTGCATTGGCGATCTTTCCTAGTCAAACTTGGGGCAGATAATCTTAGGGGCGTGAAGAATGAAGAGCTCCTTGTTGCTTGCCACAAGTCAGTTTACATTGTTTACACTGTGCTTGGAGATGTCAGCATCTATGTCGTGGGCAAAGATGAGTATGATGAACTAGCTTTGTCGGAAGTCATCTTTGTTATAACATCAGCTGTGAAGGATGTATGCGGAAAGCCTCCAACCGAGCGCCTTTTCCTGGATAAGTACGGAAGAATTTGCTTGTGTCTGGATGAAATTGTTTGGAAGGGATTGCTGGAAAATACAGAAAAGGATAGAATCAAGAGACTGATAAGGTTGAAGCCTCCAACTGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

148

Amino Acids

16.74

Weight (kDa)

5.76

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15370
fragaria_vesca FvH4_6g29940
malus_domestica MD17G1208900.v1.1
prunus_persica Prupe.3G084300_v2.0.a1 Prupe.3G084300_v2.0.a1
pyrus_communis pycom17g21470
rosa_chinensis RchiOBHm_Chr2g0135941
rosa_multiflora Rmu_ssc0000343.1_g000014
rosa_roxburghii Rroxscaffold_2G00108760
rosa_rugosa Rorug02G0326900
rosa_samantha Rh2AG378800 Rh2BG385200 Rh2CG364300 Rh2DG401500
rosa_wichuraiana Rw2G030850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AciI CCGC 1 cut(s) 294
AclI AACGTT 1 cut(s) 52
AcsI RAATTY 1 cut(s) 339
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 3 cut(s) 50, 58, 424
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 3 cut(s) 148, 245, 278
AluI AGCT 3 cut(s) 148, 245, 278
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 3 cut(s) 44, 101, 242
BfoI RGCGCY 1 cut(s) 316
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 323
BseGI GGATG 3 cut(s) 39, 292, 361
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 63, 426
BseNI ACTGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 64, 427
BspQI GCTCTTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 12
BssMI GATC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 72, 125, 435
BstF5I GGATG 3 cut(s) 39, 292, 361
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 69
BtsCI GGATG 3 cut(s) 39, 292, 361
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 186
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 6 cut(s) 82, 148, 245, 278, 301, 427
CviKI_1 RGCY 6 cut(s) 82, 148, 245, 278, 301, 427
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 3 cut(s) 72, 125, 435
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 150
FaiI YATR 4 cut(s) 213, 234, 269, 292
FalI AAGNNNNNCTT 2 cut(s) 135, 167
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 3 cut(s) 26, 299, 368
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 3 cut(s) 44, 101, 242
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 316
HhaI GCGC 1 cut(s) 315
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 1 cut(s) 402
Hpy166II GTNNAC 2 cut(s) 175, 184
Hpy188I TCNGA 3 cut(s) 31, 253, 443
Hpy188III TCNNGA 2 cut(s) 353, 406
Hpy8I GTNNAC 2 cut(s) 175, 184
HpyAV CCTTC 3 cut(s) 26, 277, 364
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 72, 125, 435
HpySE526I ACGT 1 cut(s) 52
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 92
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 81, 308, 335, 338, 365
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 216
MaeI CTAG 3 cut(s) 44, 101, 242
MaeII ACGT 1 cut(s) 52
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 3 cut(s) 148, 155, 348
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 339, 360
MmeI TCCRAC 2 cut(s) 231, 329
MnlI CCTC 3 cut(s) 67, 312, 438
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 1 cut(s) 84
PsiI TTATAA 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 138
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 55, 150, 247, 280, 422
SfaNI GCATC 1 cut(s) 216
Sse9I AATT 2 cut(s) 339, 360
SsiI CCGC 1 cut(s) 294
SspMI CTAG 3 cut(s) 44, 101, 242
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 55
TasI AATT 2 cut(s) 339, 360
TfiI GAWTC 1 cut(s) 402
TscAI CASTG 2 cut(s) 18, 193
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 156, 252, 372
TspGWI ACGGA 2 cut(s) 75, 348
TspRI CASTG 2 cut(s) 18, 193
XapI RAATTY 1 cut(s) 339
XspI CTAG 3 cut(s) 44, 101, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.