Rroxscaffold_2G00108760

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
32842795 .. 32845659
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108760.1

Sequence Viewer

Length: 444 bp
ATGATACTCGCAGTGTTGTTCGCCAACTCTGAAGGGAACATCCTAGTTGAACGTTTCAATGGAGTTCCTGCTGAGGAACGGCTACATTGGCGATCTTTCTTAGTCAAACTAGGAGCTGATAATCTTAGGGGTGTGAAGAATGAAGAACTCCTTGTTGCCTGCCACAAGTCAGTTTACATTGTTTACACTGTGCTTGGGGATGTCAGCATCTATGTTGTGGGGAAGGACGAATATGATGAACTAGCCTTGTCAGAGGTGATCTTCGTTATAACATCTGCTGTGAAGGACGTATGCGGGAAGCCTCCCACTGAACGCCTTTTCCTGGACAAGTATGGAAGAATTTGCTTGTGTCTGGATGAAATTGTTTGGAAGGGATATCTGGAGAATACAGAAAAGGATAGAATCAAGAGAATGATAAGGCTAAGGCCTCCTAGTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.82

Weight (kDa)

5.76

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15370
fragaria_vesca FvH4_6g29940
malus_domestica MD17G1208900.v1.1
prunus_persica Prupe.3G084300_v2.0.a1 Prupe.3G084300_v2.0.a1
pyrus_communis pycom17g21470
rosa_chinensis RchiOBHm_Chr2g0135941
rosa_multiflora Rmu_ssc0000343.1_g000014
rosa_roxburghii Rroxscaffold_2G00108760
rosa_rugosa Rorug02G0326900
rosa_samantha Rh2AG378800 Rh2BG385200 Rh2CG364300 Rh2DG401500
rosa_wichuraiana Rw2G030850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AciI CCGC 1 cut(s) 294
AclI AACGTT 1 cut(s) 52
AcsI RAATTY 2 cut(s) 339, 437
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 50, 58
AjnI CCWGG 1 cut(s) 321
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AoxI GGCC 1 cut(s) 425
ApoI RAATTY 2 cut(s) 339, 437
AsuHPI GGTGA 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 323
BfaI CTAG 4 cut(s) 44, 110, 242, 432
Bme1390I CCNGG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 401
Bpu10I CCTNAGC 2 cut(s) 72, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 323
BseGI GGATG 3 cut(s) 39, 205, 361
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 63
BshFI GGCC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 322
BsnI GGCC 1 cut(s) 427
Bsp143I GATC 2 cut(s) 92, 258
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 1 cut(s) 64
BssMI GATC 2 cut(s) 92, 258
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 4 cut(s) 72, 100, 125, 422
BstF5I GGATG 3 cut(s) 39, 205, 361
BstKTI GATC 2 cut(s) 95, 261
BstMBI GATC 2 cut(s) 92, 258
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 39, 205, 361
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 186, 306
Cac8I GCNNGC 1 cut(s) 160
CviJI RGCY 6 cut(s) 82, 116, 245, 301, 421, 427
CviKI_1 RGCY 6 cut(s) 82, 116, 245, 301, 421, 427
DdeI CTNAG 4 cut(s) 72, 100, 125, 422
DpnI GATC 2 cut(s) 94, 260
DpnII GATC 2 cut(s) 92, 258
Eco147I AGGCCT 1 cut(s) 427
Eco32I GATATC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 321
EcoRV GATATC 1 cut(s) 377
FaiI YATR 5 cut(s) 213, 234, 269, 292, 333
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FauI CCCGC 1 cut(s) 287
FokI GGATG 3 cut(s) 26, 212, 368
FspBI CTAG 4 cut(s) 44, 110, 242, 432
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 1 cut(s) 427
HinfI GANTC 1 cut(s) 402
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 175, 184
Hpy188I TCNGA 2 cut(s) 31, 253
Hpy188III TCNNGA 3 cut(s) 353, 380, 406
Hpy8I GTNNAC 2 cut(s) 175, 184
HpyAV CCTTC 4 cut(s) 26, 217, 277, 364
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 52, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 4 cut(s) 72, 100, 125, 422
HpySE526I ACGT 2 cut(s) 52, 288
Kzo9I GATC 2 cut(s) 92, 258
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 81, 172, 308, 335, 338, 365
LweI GCATC 1 cut(s) 216
MaeI CTAG 4 cut(s) 44, 110, 242, 432
MaeII ACGT 2 cut(s) 52, 288
MalI GATC 2 cut(s) 94, 260
MboI GATC 2 cut(s) 92, 258
MboII GAAGA 4 cut(s) 148, 155, 253, 348
MluCI AATT 3 cut(s) 339, 360, 437
MnlI CCTC 4 cut(s) 67, 247, 312, 438
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 92, 258
PceI AGGCCT 1 cut(s) 427
PfeI GAWTC 1 cut(s) 402
PfoI TCCNGGA 1 cut(s) 321
PsiI TTATAA 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
Sau3AI GATC 2 cut(s) 92, 258
ScrFI CCNGG 1 cut(s) 323
SetI ASST 4 cut(s) 55, 118, 258, 291
SfaNI GCATC 1 cut(s) 216
Sse9I AATT 3 cut(s) 339, 360, 437
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 1 cut(s) 294
SspMI CTAG 4 cut(s) 44, 110, 242, 432
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 55, 291
TasI AATT 3 cut(s) 339, 360, 437
TfiI GAWTC 1 cut(s) 402
TscAI CASTG 3 cut(s) 18, 193, 313
TspDTI ATGAA 3 cut(s) 156, 252, 372
TspRI CASTG 3 cut(s) 18, 193, 313
XapI RAATTY 2 cut(s) 339, 437
XspI CTAG 4 cut(s) 44, 110, 242, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.