Rh2DG401500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
58517637 .. 58520655
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG401500.1

Sequence Viewer

Length: 384 bp
ATGATACTCGCAGTGTTATTCGCCAACTCTGAAGGGAACATCCTAGTTGAACGTTTCAATGGAGTTCCTGCTGAGGAACGGCTGCATTGGCGATCTTTCTTAGTCAAACTAGGAGCTGATAATCTTAAAGGTGTGAAGAATGAAGAACTCCTTGTTGCCTGCCACAAGTCAGTTTACATTGTTTACACTGTGCTTGGGGATGTCAGCATCTACATTGTGGGGAAGGACGAATATGATGAACTAGCCTTGTCAGAGGTGATCTTCGTTATAACATCCGCTGTGAAGGACGTATGCGGGAAGCCTCCCACTGAGCGCCTTTTCCTGGACAAGTATGGAAGAATTTGCTTGTGTCTGGATGAAATTGTTTGGAAGGTGAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.32

Weight (kDa)

5.39

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15370
fragaria_vesca FvH4_6g29940
malus_domestica MD17G1208900.v1.1
prunus_persica Prupe.3G084300_v2.0.a1 Prupe.3G084300_v2.0.a1
pyrus_communis pycom17g21470
rosa_chinensis RchiOBHm_Chr2g0135941
rosa_multiflora Rmu_ssc0000343.1_g000014
rosa_roxburghii Rroxscaffold_2G00108760
rosa_rugosa Rorug02G0326900
rosa_samantha Rh2AG378800 Rh2BG385200 Rh2CG364300 Rh2DG401500
rosa_wichuraiana Rw2G030850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AciI CCGC 2 cut(s) 276, 294
AclI AACGTT 1 cut(s) 52
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 50, 58
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 268
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 323
BfaI CTAG 3 cut(s) 44, 110, 242
BfoI RGCGCY 1 cut(s) 316
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 323
BseGI GGATG 4 cut(s) 39, 205, 272, 361
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 63, 300
BseXI GCAGC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 322
Bsp143I GATC 2 cut(s) 92, 258
BspACI CCGC 2 cut(s) 276, 294
BspCNI CTCAG 2 cut(s) 64, 301
BspHI TCATGA 1 cut(s) 380
BssMI GATC 2 cut(s) 92, 258
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 72, 100, 309
BstF5I GGATG 4 cut(s) 39, 205, 272, 361
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 2 cut(s) 95, 261
BstMBI GATC 2 cut(s) 92, 258
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 69
BtsCI GGATG 4 cut(s) 39, 205, 272, 361
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 186, 306
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 380
CfoI GCGC 1 cut(s) 315
CviAII CATG 1 cut(s) 381
CviJI RGCY 4 cut(s) 82, 116, 245, 301
CviKI_1 RGCY 4 cut(s) 82, 116, 245, 301
DdeI CTNAG 3 cut(s) 72, 100, 309
DpnI GATC 2 cut(s) 94, 260
DpnII GATC 2 cut(s) 92, 258
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 384
FaiI YATR 5 cut(s) 234, 269, 292, 333, 382
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 1 cut(s) 380
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 4 cut(s) 26, 212, 259, 368
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 3 cut(s) 44, 110, 242
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 316
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 384
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 175, 184
Hpy188I TCNGA 2 cut(s) 31, 253
Hpy188III TCNNGA 2 cut(s) 353, 381
Hpy8I GTNNAC 2 cut(s) 175, 184
HpyAV CCTTC 4 cut(s) 26, 217, 277, 364
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 2 cut(s) 52, 288
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 72, 100, 309
HpySE526I ACGT 2 cut(s) 52, 288
Hsp92II CATG 1 cut(s) 384
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 92, 258
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 5 cut(s) 81, 172, 308, 335, 338
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 216
MaeI CTAG 3 cut(s) 44, 110, 242
MaeII ACGT 2 cut(s) 52, 288
MalI GATC 2 cut(s) 94, 260
MboI GATC 2 cut(s) 92, 258
MboII GAAGA 4 cut(s) 148, 155, 253, 348
MluCI AATT 2 cut(s) 339, 360
MnlI CCTC 4 cut(s) 67, 247, 312, 369
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 92, 258
NlaIII CATG 1 cut(s) 384
PagI TCATGA 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 1 cut(s) 84
PsiI TTATAA 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 92, 258
ScrFI CCNGG 1 cut(s) 323
SetI ASST 7 cut(s) 55, 118, 133, 258, 291, 375, 380
SfaNI GCATC 1 cut(s) 216
Sse9I AATT 2 cut(s) 339, 360
SsiI CCGC 2 cut(s) 276, 294
SspMI CTAG 3 cut(s) 44, 110, 242
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 2 cut(s) 55, 291
TasI AATT 2 cut(s) 339, 360
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 18, 193, 313
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 156, 252, 372
TspRI CASTG 3 cut(s) 18, 193, 313
XapI RAATTY 1 cut(s) 339
XspI CTAG 3 cut(s) 44, 110, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.