Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0017722

Physical Location & Seq

Genomic Coordinates Forward (+)

28744278 .. 28745669

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1238100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCAAATTGATGAAAGTTATATCAAGATGGAAATTTGGGAAGAGGGACTGGAGCCAGTGAGCCCTACTGGCCATTATTTCAACAACTCTGTTTTATCAATATCAATTCTTGCTGTTTTGGAATATGAAATTCCAATTGATGACTCTCAATTTCTGTCATTGCTCGAGAACGTGTTCCTGCCTATCAACCCACGCTTCTCCTCTATCATGATTGAAAAAAATGGAAAGAAACAATGGAAAAGGGTTGAAGTGAAGCTTGAAGACCATGTTAAAACTCCAATCTTCCCTTCCAACTTGTCGAATGAATCATATGACGAGTATTTTTTGACGACTACTTGTCAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

116

Amino Acids

13.39

Weight (kDa)

4.55

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017722)

Species	Orthologous Gene IDs
malus_domestica	MD10G1158900.v1.1 MD10G1159200.v1.1 MD10G1159300.v1.1 MD17G1238100.v1.1
prunus_persica	Prupe.3G140600_v2.0.a1 Prupe.3G141300_v2.0.a1
pyrus_communis	pycom10g13730 pycom10g13740 pycom17g24200
rosa_roxburghii	Rroxscaffold_1G00029720
rosa_samantha	Rh6BG155000 Rh6DG140200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	33, 129
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	82, 215, 248, 260
AhdI	GACNNNNNGTC	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	70
ApoI	RAATTY	2 cut(s)	33, 129
Asp700I	GAANNNNTTC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	267
BccI	CCATC	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	54, 56, 73
Bse3DI	GCAATG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	54, 56, 73
BseRI	GAGGAG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	3 cut(s)	54, 56, 73
Bst6I	CTCTTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	63
CciI	TCATGA	1 cut(s)	207
CviAII	CATG	2 cut(s)	208, 266
CviJI	RGCY	4 cut(s)	55, 63, 72, 256
CviKI_1	RGCY	4 cut(s)	55, 63, 72, 256
DriI	GACNNNNNGTC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	2 cut(s)	211, 269
FaiI	YATR	6 cut(s)	21, 126, 209, 267, 310, 312
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	2 cut(s)	207, 265
FauNDI	CATATG	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	211, 269
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	143, 305
Hpy188III	TCNNGA	3 cut(s)	25, 166, 208
HpyAV	CCTTC	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	171, 344
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	171, 344
Hsp92II	CATG	2 cut(s)	211, 269
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	35, 54, 69, 191
MaeII	ACGT	2 cut(s)	171, 344
MboII	GAAGA	3 cut(s)	53, 272, 274
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	6 cut(s)	6, 33, 105, 129, 135, 149
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	2 cut(s)	37, 211
Mox20I	TGGCCA	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	72
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeI	CATATG	1 cut(s)	310
NlaIII	CATG	2 cut(s)	211, 269
NlaIV	GGNNCC	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	164
PagI	TCATGA	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	270
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	3 cut(s)	174, 258, 347
Sfr274I	CTCGAG	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	6 cut(s)	6, 33, 105, 129, 135, 149
TaiI	ACGT	2 cut(s)	174, 347
TaqI	TCGA	2 cut(s)	165, 299
TasI	AATT	6 cut(s)	6, 33, 105, 129, 135, 149
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	27, 141, 318
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	2 cut(s)	33, 129
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.