Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017722

Physical Location & Seq

Genomic Coordinates Forward (+)

25097863 .. 25111384

Gene Structure 13522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGTTGCAGTTTGAGGGAGAAGAAGGACTGCAGCCGGTGAGCCCTCTCGGTCAGTACTTCACTAGCTCTGTGTTATCGGTATCGAATCTTGGTGTTTTGGAAACTGAGGTTCCAATCGATGAGCTTCCAGCTATGTCGTTGCTTCAAAATGTGTTCCTCCCCATCAGCCCACGGTTCTCCTCGATCATGGTTGAGAGAAGGGGAAAGAAGCAGTGGAAAAGGGTTGAAGTGAAGCTTGAAGACCATGTTAACATCCCTATTTTCCCTTCTGGCCTATCGCCTGCATCATACGATAAGTATCTTGATGACTACATATCAAAGTTAGCAATGGAAAGACTTCCGCAACACAAACCTCTCTGGAAATTCACATTATCAAGTACCCAACTACCAATGCAGCCGGCACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

136

Amino Acids

15.45

Weight (kDa)

5.37

Isoelectric Point (pI)

68.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017722)

Species	Orthologous Gene IDs
malus_domestica	MD10G1158900.v1.1 MD10G1159200.v1.1 MD10G1159300.v1.1 MD17G1238100.v1.1
prunus_persica	Prupe.3G140600_v2.0.a1 Prupe.3G141300_v2.0.a1
pyrus_communis	pycom10g13730 pycom10g13740 pycom17g24200
rosa_roxburghii	Rroxscaffold_1G00029720
rosa_samantha	Rh6BG155000 Rh6DG140200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	59, 382
AgsI	TTSAA	3 cut(s)	149, 230, 242
AluBI	AGCT	4 cut(s)	69, 127, 134, 238
AluI	AGCT	4 cut(s)	69, 127, 134, 238
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	34, 397
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	35, 398
BlsI	GCNGC	2 cut(s)	36, 399
BmcAI	AGTACT	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse118I	RCCGGY	2 cut(s)	37, 400
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	255
BseJI	GATNNNNATC	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	276
BshVI	ATCGAT	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	38, 401
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	2 cut(s)	37, 400
BssAI	RCCGGY	2 cut(s)	37, 400
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	177, 408
BstC8I	GCNNGC	2 cut(s)	285, 402
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	221, 404
Cac8I	GCNNGC	2 cut(s)	285, 402
Cfr10I	RCCGGY	2 cut(s)	37, 400
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	58, 381
CviAII	CATG	2 cut(s)	190, 248
CviJI	RGCY	9 cut(s)	37, 45, 69, 127, 134, 171, 238, 276, 400
CviKI_1	RGCY	9 cut(s)	37, 45, 69, 127, 134, 171, 238, 276, 400
CviQI	GTAC	2 cut(s)	58, 381
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	2 cut(s)	193, 251
FaiI	YATR	5 cut(s)	137, 191, 249, 292, 317
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	2 cut(s)	189, 247
Fnu4HI	GCNGC	2 cut(s)	35, 398
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	35, 398
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	2 cut(s)	35, 398
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	2 cut(s)	38, 401
Hin1II	CATG	2 cut(s)	193, 251
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	88
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	38, 401
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	305, 361
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	20, 195, 279
HpyCH4III	ACNGT	2 cut(s)	177, 408
HpyCH4V	TGCA	4 cut(s)	10, 34, 287, 397
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	193, 251
KroI	GCCGGC	1 cut(s)	400
KroNI	GCCGGC	1 cut(s)	402
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	51, 144, 258, 297, 346
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	66
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	35, 254
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	1 cut(s)	365
MnlI	CCTC	6 cut(s)	10, 57, 103, 170, 193, 366
MroNI	GCCGGC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	1 cut(s)	252
MspI	CCGG	2 cut(s)	38, 401
NaeI	GCCGGC	1 cut(s)	402
NdeII	GATC	1 cut(s)	186
NgoMIV	GCCGGC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	193, 251
NlaIV	GGNNCC	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	36, 399
PspN4I	GGNNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	36
RsaI	GTAC	2 cut(s)	59, 382
RsaNI	GTAC	2 cut(s)	58, 381
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	35, 398
Sau3AI	GATC	1 cut(s)	186
ScaI	AGTACT	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	71, 114, 129, 136, 240, 358
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	177, 408
TaqI	TCGA	3 cut(s)	86, 120, 185
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	365
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	221, 411
TseI	GCWGC	2 cut(s)	34, 397
TspRI	CASTG	2 cut(s)	221, 411
XapI	RAATTY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.