Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0017722

Physical Location & Seq

Genomic Coordinates Reverse (-)

17200191 .. 17201714

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGTTTATTAAGGTTGATGATGGAGATTATTACAATGAGCCGGTGAGTCCTACTGGGCAATGTCTCAACACGTCGGTATTATCCATGTCAGTTCTTGGTGTTTTAGAATCTGAGGTTCCAATCGATGAATCAAAGATCATGTCATTCCTTCAGGATGTCTTCCTCCACATCAACCCACGCTTCTGCTCCATCATGGTTGACGTCGACGGAGAGAAACAATGGAAGAAGGTTGAGGTCAAGCTCACGGATCATGTTCACGTCCCTATTTTTCCCTCTGGAGTATTGTCACCTGAGTCTTACGACCTTTATCTCGGTGACTACATATCAAAAGTAGTACTGGAAAAATACCCAGAAGACAAACCACTGTGGGAAGTTCACATAGTCAAATATCCAACTTCCACTGCCGCTGGTAACCTAATATTCAAGCTTCACCATGCACTTGGCGATGGCTACTCCTTCATGAGTGCTCTTCTTTCTTGTCTGCAAAGAGCTGACGATCCTTCTCGCCCTCTAACTTTTCCGTCGCGCCGAGGTTCCGAGAGAAAGGGACGTGACGTTTATTATAAGAGTGCTTTGAGGTGGGTGTCTCAGAATTTGGCCTCAGCTTTTTATGCCGTGAAGGATTTGGGTTGGAACGCTTTCGTTGAAGATGATCGAACACCGATAAGATCTGGGAATTCTGGAGTTGAGTTTCTGCCAATGGATATATCAAGCTTGATATTCTCCCTTGATGAAATCAAACTAATCAAGAACAAGCTCAACGTGACGATAAATGATGTGATATGTGGAATAGTGTTCTTTGCTACTAGACTGTACATGCAAGAGATGATTAATAATAACCAAAAATCAAGCAGCGCAGCAAGCTGCCGAGCGCTGGTGTTGGTCAATACTAGGATCACTCATGGTGATTATAAGCCGGTGAAGCAGATCGATCGGACCCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

317

Amino Acids

35.74

Weight (kDa)

5.84

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017722)

Species	Orthologous Gene IDs
malus_domestica	MD10G1158900.v1.1 MD10G1159200.v1.1 MD10G1159300.v1.1 MD17G1238100.v1.1
prunus_persica	Prupe.3G140600_v2.0.a1 Prupe.3G141300_v2.0.a1
pyrus_communis	pycom10g13730 pycom10g13740 pycom17g24200
rosa_roxburghii	Rroxscaffold_1G00029720
rosa_samantha	Rh6BG155000 Rh6DG140200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 915
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	529
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	3 cut(s)	258, 494, 905
AcsI	RAATTY	2 cut(s)	595, 679
AcuI	CTGAAG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	339, 818
AfeI	AGCGCT	1 cut(s)	876
AfiI	CCNNNNNNNGG	1 cut(s)	877
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	427, 650
AjiI	CACGTC	3 cut(s)	75, 262, 554
AluBI	AGCT	7 cut(s)	244, 430, 494, 608, 717, 760, 867
AluI	AGCT	7 cut(s)	244, 430, 494, 608, 717, 760, 867
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	71, 594
AlwI	GGATC	3 cut(s)	258, 494, 905
Aor51HI	AGCGCT	1 cut(s)	876
AoxI	GGCC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	855, 860, 867
ApoI	RAATTY	2 cut(s)	595, 679
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AseI	ATTAAT	1 cut(s)	834
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	3 cut(s)	531, 860, 877
AspS9I	GGNCC	1 cut(s)	939
AsuHPI	GGTGA	6 cut(s)	58, 282, 329, 425, 920, 934
AvaII	GGWCC	1 cut(s)	939
BbsI	GAAGAC	2 cut(s)	154, 363
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	854, 867, 872
BccI	CCATC	3 cut(s)	17, 200, 443
BceAI	ACGGC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BcoDI	GTCTC	2 cut(s)	71, 594
BfaI	CTAG	2 cut(s)	810, 894
BfoI	RGCGCY	1 cut(s)	878
BglII	AGATCT	1 cut(s)	671
BisI	GCNGC	4 cut(s)	408, 856, 861, 868
BlsI	GCNGC	4 cut(s)	409, 857, 862, 869
BmcAI	AGTACT	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	939
BmgBI	CACGTC	3 cut(s)	75, 262, 554
BmgT120I	GGNCC	1 cut(s)	939
BmiI	GGNNCC	3 cut(s)	120, 538, 941
BmrI	ACTGGG	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	2 cut(s)	154, 363
BpmI	CTGGAG	2 cut(s)	300, 705
Bpu10I	CCTNAGC	1 cut(s)	604
Bsa29I	ATCGAT	2 cut(s)	126, 933
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse118I	RCCGGY	2 cut(s)	43, 919
Bse1I	ACTGG	2 cut(s)	61, 345
Bse3DI	GCAATG	1 cut(s)	68
BseCI	ATCGAT	2 cut(s)	126, 933
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	4 cut(s)	105, 285, 605, 618
BseNI	ACTGG	2 cut(s)	61, 345
BseXI	GCAGC	3 cut(s)	854, 867, 872
Bsh1236I	CGCG	1 cut(s)	529
Bsh1285I	CGRYCG	1 cut(s)	937
BshFI	GGCC	1 cut(s)	602
BshVI	ATCGAT	2 cut(s)	126, 933
BsiEI	CGRYCG	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	2 cut(s)	44, 920
BslFI	GGGAC	2 cut(s)	248, 564
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmAI	GTCTC	2 cut(s)	71, 594
BsmFI	GGGAC	2 cut(s)	248, 564
BsnI	GGCC	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	602
BspCNI	CTCAG	4 cut(s)	106, 286, 604, 617
BspDI	ATCGAT	2 cut(s)	126, 933
BspFNI	CGCG	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	120, 538, 941
BspPI	GGATC	3 cut(s)	258, 494, 905
BspQI	GCTCTTC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	68
BsrFI	RCCGGY	2 cut(s)	43, 919
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	2 cut(s)	61, 345
BssAI	RCCGGY	2 cut(s)	43, 919
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
BssNI	GRCGYC	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	369, 816
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	816
BstC8I	GCNNGC	1 cut(s)	865
BstDEI	CTNAG	4 cut(s)	114, 294, 591, 604
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	529
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	3 cut(s)	531, 860, 877
BstKTI	GATC	8 cut(s)	141, 253, 502, 658, 674, 900, 933, 937
BstMAI	GTCTC	2 cut(s)	71, 594
BstMBI	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
BstMCI	CGRYCG	1 cut(s)	937
BstMWI	GCNNNNNNNGC	3 cut(s)	614, 864, 925
BstNSI	RCATGY	1 cut(s)	823
BstPI	GGTNACC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	3 cut(s)	854, 867, 872
BstV2I	GAAGAC	2 cut(s)	154, 363
BstX2I	RGATCY	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	671
Bsu15I	ATCGAT	2 cut(s)	126, 933
BsuRI	GGCC	1 cut(s)	602
BsuTUI	ATCGAT	2 cut(s)	126, 933
BtgZI	GCGATG	1 cut(s)	462
BtrI	CACGTC	3 cut(s)	75, 262, 554
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	2 cut(s)	365, 402
Cac8I	GCNNGC	1 cut(s)	865
CciI	TCATGA	1 cut(s)	462
CfoI	GCGC	3 cut(s)	531, 860, 877
Cfr10I	RCCGGY	2 cut(s)	43, 919
Cfr13I	GGNCC	1 cut(s)	939
ClaI	ATCGAT	2 cut(s)	126, 933
Csp6I	GTAC	2 cut(s)	338, 817
CviAII	CATG	8 cut(s)	88, 142, 196, 254, 437, 463, 820, 905
CviQI	GTAC	2 cut(s)	338, 817
DdeI	CTNAG	4 cut(s)	114, 294, 591, 604
DpnI	GATC	8 cut(s)	140, 252, 501, 657, 673, 899, 932, 936
DpnII	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	939
Eco47III	AGCGCT	1 cut(s)	876
Eco57I	CTGAAG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	679
FaeI	CATG	8 cut(s)	91, 145, 199, 257, 440, 466, 823, 908
FaqI	GGGAC	2 cut(s)	248, 564
FatI	CATG	8 cut(s)	87, 141, 195, 253, 436, 462, 819, 904
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	408, 856, 861, 868
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	408, 856, 861, 868
FspBI	CTAG	2 cut(s)	810, 894
GlaI	GCGC	3 cut(s)	530, 859, 876
GluI	GCNGC	4 cut(s)	408, 856, 861, 868
GsuI	CTGGAG	2 cut(s)	300, 705
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	1 cut(s)	602
HapII	CCGG	2 cut(s)	44, 920
HhaI	GCGC	3 cut(s)	531, 860, 877
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	8 cut(s)	91, 145, 199, 257, 440, 466, 823, 908
Hin6I	GCGC	3 cut(s)	529, 858, 875
HinP1I	GCGC	3 cut(s)	529, 858, 875
HincII	GTYRAC	2 cut(s)	202, 208
HindII	GTYRAC	2 cut(s)	202, 208
HindIII	AAGCTT	2 cut(s)	428, 715
HinfI	GANTC	4 cut(s)	49, 110, 131, 296
HpaII	CCGG	2 cut(s)	44, 920
HphI	GGTGA	6 cut(s)	58, 282, 329, 425, 920, 934
Hpy166II	GTNNAC	4 cut(s)	202, 208, 259, 379
Hpy188I	TCNGA	5 cut(s)	115, 541, 594, 939, 950
Hpy188III	TCNNGA	5 cut(s)	155, 279, 463, 684, 751
Hpy8I	GTNNAC	4 cut(s)	202, 208, 259, 379
Hpy99I	CGWCG	4 cut(s)	79, 209, 212, 529
HpyAV	CCTTC	5 cut(s)	161, 223, 469, 513, 616
HpyCH4III	ACNGT	2 cut(s)	369, 816
HpyCH4IV	ACGT	6 cut(s)	74, 204, 261, 553, 558, 765
HpyCH4V	TGCA	3 cut(s)	440, 487, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	614, 864, 925
HpyF3I	CTNAG	4 cut(s)	114, 294, 591, 604
HpySE526I	ACGT	6 cut(s)	74, 204, 261, 553, 558, 765
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	8 cut(s)	91, 145, 199, 257, 440, 466, 823, 908
HspAI	GCGC	3 cut(s)	529, 858, 875
Kzo9I	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	3 cut(s)	854, 867, 872
MaeI	CTAG	2 cut(s)	810, 894
MaeII	ACGT	6 cut(s)	74, 204, 261, 553, 558, 765
MaeIII	GTNAC	5 cut(s)	288, 317, 413, 554, 766
MalI	GATC	8 cut(s)	140, 252, 501, 657, 673, 899, 932, 936
MboI	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
MboII	GAAGA	5 cut(s)	154, 238, 368, 464, 662
MflI	RGATCY	1 cut(s)	671
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	3 cut(s)	595, 679, 944
MlyI	GAGTC	2 cut(s)	58, 305
MmeI	TCCRAC	2 cut(s)	419, 614
MnlI	CCTC	8 cut(s)	109, 176, 229, 286, 522, 527, 573, 613
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	2 cut(s)	12, 834
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	44, 920
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	3 cut(s)	614, 864, 925
NdeII	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
NlaIII	CATG	8 cut(s)	91, 145, 199, 257, 440, 466, 823, 908
NlaIV	GGNNCC	3 cut(s)	120, 538, 941
NmeAIII	GCCGAG	2 cut(s)	557, 896
NmuCI	GTSAC	4 cut(s)	288, 317, 554, 766
NspI	RCATGY	1 cut(s)	823
PagI	TCATGA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	2 cut(s)	110, 131
PkrI	GCNGC	4 cut(s)	409, 857, 862, 869
Ple19I	CGATCG	1 cut(s)	937
PleI	GAGTC	2 cut(s)	57, 304
PpsI	GAGTC	2 cut(s)	57, 304
PshBI	ATTAAT	1 cut(s)	834
PsiI	TTATAA	2 cut(s)	567, 915
PspEI	GGTNACC	1 cut(s)	413
PspN4I	GGNNCC	3 cut(s)	120, 538, 941
PspPI	GGNCC	1 cut(s)	939
PsuI	RGATCY	1 cut(s)	671
PvuI	CGATCG	1 cut(s)	937
RsaI	GTAC	2 cut(s)	339, 818
RsaNI	GTAC	2 cut(s)	338, 817
SalI	GTCGAC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	12, 834
SatI	GCNGC	4 cut(s)	408, 856, 861, 868
Sau3AI	GATC	8 cut(s)	138, 250, 499, 655, 671, 897, 930, 934
Sau96I	GGNCC	1 cut(s)	939
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	2 cut(s)	58, 305
SduI	GDGCHC	1 cut(s)	472
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	939
Sse9I	AATT	3 cut(s)	595, 679, 944
SsiI	CCGC	1 cut(s)	408
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	810, 894
TaaI	ACNGT	2 cut(s)	369, 816
TaiI	ACGT	6 cut(s)	77, 207, 264, 556, 561, 768
TaqI	TCGA	4 cut(s)	126, 207, 658, 933
TasI	AATT	3 cut(s)	595, 679, 944
TatI	WGTACW	2 cut(s)	337, 816
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	110, 131
Tru1I	TTAA	2 cut(s)	12, 834
Tru9I	TTAA	2 cut(s)	12, 834
TscAI	CASTG	2 cut(s)	372, 409
TseFI	GTSAC	4 cut(s)	288, 317, 554, 766
TseI	GCWGC	3 cut(s)	855, 860, 867
Tsp45I	GTSAC	4 cut(s)	288, 317, 554, 766
TspDTI	ATGAA	3 cut(s)	144, 451, 750
TspGWI	ACGGA	3 cut(s)	225, 263, 513
TspRI	CASTG	2 cut(s)	372, 409
VpaK11BI	GGWCC	1 cut(s)	939
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	2 cut(s)	595, 679
XceI	RCATGY	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	2 cut(s)	810, 894
ZraI	GACGTC	1 cut(s)	205
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.