Rroxscaffold_1G00029720

O-acyltransferase (WSD1-like)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017722
Physical Location & Seq
Forward (+)
38576924 .. 38579246
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029720.1

Sequence Viewer

Length: 570 bp
ATGGAGTTTGGCGAAGAGGGATTACTACAAGAGCCGGTGAGCCCTGGTGGTCAGTTCATCAACAGCTCTGTCTTATCTCTTGCAATTCTTGCCGTTTTGGAATCACAAGTTCCAATCGACGATTCTCAAACGTTTTTCCTTCTGAAAAATGTCTTCCTCCCGATCAATCCACGCTTCTCTTCCATCATGGACAGCCCAATAGAAAGGCCTAACACATGGCTTGCTGGAATAGCTCGGACAAGCCTAGCCGCCATCTCCACCGTGAACAGTTTTCCGGGTAGCTATGCCGGATCCCGCAGCCCCGATCCATGCCTCCGGTCCATCGCGCCCGCCGCATTGTCCTCACGTCGTAACAGACCGCTTCAAGACAGATCCCAACATCCCCACGAAGAGCACCAAAACCGGAGAAAGCAACACCACGCACGCGCCAGTTCTTCCATCACTCGCTGCCACGAGTTCCAAAAAAATCCCACACCGATGCGCACCGCCTTTGCACATAGCACGAAACACCTAGAGATCCCACCCGGAACCTACGCCAATGATCTAAAAAATGGCCTAGGCGGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1298 WES_acyltransf

Protein Analysis

189

Amino Acids

20.75

Weight (kDa)

9.13

Isoelectric Point (pI)

68.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 563
AccII CGCG 2 cut(s) 326, 426
AciI CCGC 7 cut(s) 249, 295, 330, 333, 359, 486, 561
AclI AACGTT 1 cut(s) 131
AclWI GGATC 5 cut(s) 285, 298, 299, 366, 511
AcyI GRCGYC 1 cut(s) 564
AgsI TTSAA 1 cut(s) 365
AjiI CACGTC 1 cut(s) 347
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 3 cut(s) 66, 233, 282
AluI AGCT 3 cut(s) 66, 233, 282
Alw21I GWGCWC 1 cut(s) 396
AlwI GGATC 5 cut(s) 285, 298, 299, 366, 511
AoxI GGCC 2 cut(s) 206, 553
ApeKI GCWGC 2 cut(s) 297, 447
AspA2I CCTAGG 1 cut(s) 556
AspLEI GCGC 4 cut(s) 328, 428, 483, 566
AspS9I GGNCC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 276, 525
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 318
AvrII CCTAGG 1 cut(s) 556
BamHI GGATCC 1 cut(s) 290
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 1 cut(s) 38
BauI CACGAG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 309, 434
BccI CCATC 4 cut(s) 191, 260, 329, 446
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 2 cut(s) 276, 525
BfaI CTAG 4 cut(s) 245, 512, 557, 568
BfoI RGCGCY 1 cut(s) 567
BglI GCCNNNNNGGC 1 cut(s) 561
BisI GCNGC 5 cut(s) 249, 298, 333, 448, 562
BlnI CCTAGG 1 cut(s) 556
BlsI GCNGC 5 cut(s) 250, 299, 334, 449, 563
Bme1390I CCNGG 3 cut(s) 45, 276, 525
Bme18I GGWCC 1 cut(s) 318
BmgBI CACGTC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 3 cut(s) 292, 529, 565
BmrFI CCNGG 3 cut(s) 45, 276, 525
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 276, 525
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 43, 556
BsaWI WCCGGW 2 cut(s) 315, 402
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 2 cut(s) 43, 556
BseGI GGATG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 429
BseXI GCAGC 2 cut(s) 309, 434
Bsh1236I CGCG 2 cut(s) 326, 426
BshFI GGCC 2 cut(s) 208, 555
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 6 cut(s) 35, 275, 288, 316, 403, 525
BsnI GGCC 2 cut(s) 208, 555
Bsp1286I GDGCHC 2 cut(s) 44, 396
Bsp143I GATC 6 cut(s) 162, 290, 304, 371, 516, 541
BspACI CCGC 7 cut(s) 249, 295, 330, 333, 359, 486, 561
BspANI GGCC 2 cut(s) 208, 555
BspFNI CGCG 2 cut(s) 326, 426
BspLI GGNNCC 3 cut(s) 292, 529, 565
BspPI GGATC 5 cut(s) 285, 298, 299, 366, 511
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 429
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 43, 556
BssMI GATC 6 cut(s) 162, 290, 304, 371, 516, 541
BssNI GRCGYC 1 cut(s) 564
BssSI CACGAG 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 556
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 262, 269
Bst6I CTCTTC 3 cut(s) 9, 184, 384
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 3 cut(s) 222, 330, 424
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 2 cut(s) 326, 426
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 4 cut(s) 328, 428, 483, 566
BstKTI GATC 6 cut(s) 165, 293, 307, 374, 519, 544
BstMBI GATC 6 cut(s) 162, 290, 304, 371, 516, 541
BstMWI GCNNNNNNNGC 4 cut(s) 89, 230, 332, 561
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 3 cut(s) 43, 274, 523
BstUI CGCG 2 cut(s) 326, 426
BstV1I GCAGC 2 cut(s) 309, 434
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 3 cut(s) 290, 371, 516
BstYI RGATCY 3 cut(s) 290, 371, 516
BsuRI GGCC 2 cut(s) 208, 555
BtgZI GCGATG 1 cut(s) 307
BtrI CACGTC 1 cut(s) 347
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 3 cut(s) 222, 330, 424
CfoI GCGC 4 cut(s) 328, 428, 483, 566
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 318
CviAII CATG 3 cut(s) 187, 216, 309
DinI GGCGCC 1 cut(s) 565
DpnI GATC 6 cut(s) 164, 292, 306, 373, 518, 543
DpnII GATC 6 cut(s) 162, 290, 304, 371, 516, 541
Eam1104I CTCTTC 3 cut(s) 9, 184, 384
EarI CTCTTC 3 cut(s) 9, 184, 384
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 565
EheI GGCGCC 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 3 cut(s) 190, 219, 312
FaiI YATR 5 cut(s) 188, 217, 285, 310, 498
FatI CATG 3 cut(s) 186, 215, 308
FauI CCCGC 2 cut(s) 302, 337
Fnu4HI GCNGC 5 cut(s) 249, 298, 333, 448, 562
FokI GGATG 1 cut(s) 366
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 5 cut(s) 249, 298, 333, 448, 562
FspAI RTGCGCAY 1 cut(s) 482
FspBI CTAG 4 cut(s) 245, 512, 557, 568
FspI TGCGCA 1 cut(s) 482
GlaI GCGC 4 cut(s) 327, 427, 482, 565
GluI GCNGC 5 cut(s) 249, 298, 333, 448, 562
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 2 cut(s) 208, 555
HapII CCGG 6 cut(s) 35, 275, 288, 316, 403, 525
HhaI GCGC 4 cut(s) 328, 428, 483, 566
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 3 cut(s) 190, 219, 312
Hin6I GCGC 4 cut(s) 326, 426, 481, 564
HinP1I GCGC 4 cut(s) 326, 426, 481, 564
HinfI GANTC 2 cut(s) 101, 122
HpaII CCGG 6 cut(s) 35, 275, 288, 316, 403, 525
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 144, 237
Hpy188III TCNNGA 2 cut(s) 160, 365
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 122, 351
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 262, 269
HpyCH4IV ACGT 2 cut(s) 131, 346
HpyCH4V TGCA 2 cut(s) 83, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 230, 332, 561
HpySE526I ACGT 2 cut(s) 131, 346
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 3 cut(s) 190, 219, 312
HspAI GCGC 4 cut(s) 326, 426, 481, 564
KasI GGCGCC 1 cut(s) 563
Kzo9I GATC 6 cut(s) 162, 290, 304, 371, 516, 541
LguI GCTCTTC 1 cut(s) 384
Lsp1109I GCAGC 2 cut(s) 309, 434
LweI GCATC 1 cut(s) 468
MaeI CTAG 4 cut(s) 245, 512, 557, 568
MaeII ACGT 2 cut(s) 131, 346
MaeIII GTNAC 1 cut(s) 350
MalI GATC 6 cut(s) 164, 292, 306, 373, 518, 543
MboI GATC 6 cut(s) 162, 290, 304, 371, 516, 541
MboII GAAGA 5 cut(s) 26, 145, 171, 401, 426
MflI RGATCY 3 cut(s) 290, 371, 516
MhlI GDGCHC 2 cut(s) 44, 396
MluCI AATT 1 cut(s) 84
Mly113I GGCGCC 1 cut(s) 564
MnlI CCTC 4 cut(s) 10, 167, 323, 352
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 6 cut(s) 35, 275, 288, 316, 403, 525
MspR9I CCNGG 3 cut(s) 45, 276, 525
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 2 cut(s) 326, 426
MwoI GCNNNNNNNGC 4 cut(s) 89, 230, 332, 561
NarI GGCGCC 1 cut(s) 564
NciI CCSGG 2 cut(s) 276, 525
NdeII GATC 6 cut(s) 162, 290, 304, 371, 516, 541
NlaIII CATG 3 cut(s) 190, 219, 312
NlaIV GGNNCC 3 cut(s) 292, 529, 565
NsbI TGCGCA 1 cut(s) 482
PceI AGGCCT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 101, 122
PkrI GCNGC 5 cut(s) 250, 299, 334, 449, 563
PluTI GGCGCC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 292, 529, 565
PspPI GGNCC 1 cut(s) 318
PsuI RGATCY 3 cut(s) 290, 371, 516
RseI CAYNNNNRTG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 384
SatI GCNGC 5 cut(s) 249, 298, 333, 448, 562
Sau3AI GATC 6 cut(s) 162, 290, 304, 371, 516, 541
Sau96I GGNCC 1 cut(s) 318
ScrFI CCNGG 3 cut(s) 45, 276, 525
SduI GDGCHC 2 cut(s) 44, 396
SetI ASST 7 cut(s) 68, 134, 235, 284, 349, 513, 533
SfaNI GCATC 1 cut(s) 468
SfoI GGCGCC 1 cut(s) 565
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 7 cut(s) 249, 295, 330, 333, 359, 486, 561
SspDI GGCGCC 1 cut(s) 563
SspMI CTAG 4 cut(s) 245, 512, 557, 568
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 3 cut(s) 43, 274, 523
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 262, 269
TaiI ACGT 2 cut(s) 134, 349
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 84
TauI GCSGC 3 cut(s) 251, 335, 564
TfiI GAWTC 2 cut(s) 101, 122
TseI GCWGC 2 cut(s) 297, 447
TspDTI ATGAA 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 318
XmaJI CCTAGG 1 cut(s) 556
XspI CTAG 4 cut(s) 245, 512, 557, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.